FvH4_6g17890

Heat Stress Transcription Factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
11741401 .. 11743920
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17890.t1

Sequence Viewer

Length: 1359 bp
ATGTTTCCGAGAGAGCCTGAACTGGACCCGGAAATGGGAGAGTCGATGGAATTAGAAGGGCAGCTGTCTGGCTGTGTGGGAGTGCCGCAGCCGCTTCAGTGTCTGCAGGAGACTCCCGTGCCGCCGTTTCTTTCCAAGACGTTTGATTTGGTGGACGACCCGGCGCTGGATTTGATCATATCGTGGGGTTCTGCTGGAGCCAGCTTCGTGGTTTGGGACCCTGTGGAGTTTTCAAGGCTCGTCCTGCCCCGGAATTTCAAGCACAACAATTTCTCCAGCTTTGTTCGCCAGCTTAATACTTATGGTTTTCGCAAGATCGATACAGATAAGTGGGAGTTTGCAAATGAAGCTTTCCTGAGGGGCAAAAGACATTTGTTGAAGAACATCCAGAGGCGCAAGTCATGTCAGTCCTTACAAATTGGGAGCTTTACTGGTCCTTCTGCTGAAGCAGTTAGGCCAGGACTCGAAGGTGAGGTAGAGTCGTTGAGGAACCAGAGAAGTCTATTGATGCAGGAAGTTGTTGACTTGCAACAGCAGCAGCGAGGTACAGCTCACCAGATGAAAACAGTGAATGAAAGGCTGGTGTCTGCTGAGCAGAGACAGAAGCAGATGGTTTCTTTCTTGGCCAAGATGCTTCAAAACCCAGCATTCGCAGCCCGACTTCAACAGAAGAGAGAACAGAAAGTAATAGGCTCTCCTACTGGGCAGAGGAAATTTGTTAAGGCGCGTGAGCGTGAAGTAGGTAAATCTGATCCTTATGTGGAAGGGCAGATTGTGAAGTACCAACCTGCTTGGAGAATTCATACCATGTCATCTGCAGTCCCAGATGTAAATGCAGTTCCTACTGAAAACCCTCCAGATCATGGTATGCCATTTCAATTTGAGAATGTTGCACTTGATGGGTTAATTGACTCAGATGAACTAGAAGTAACACAAGGTTTTATCAAAACACCAGAGCAAGAGGGTGAAGGAGCATCAAGCATAGTAACTGAAGATCCACTTTCGAAAGGCAAGAGTGTTGTGACCCAACTGGAGGTTAATCCCGAGCCTTGCATCTCTTTCCAGGATGATTTAATGAAGGAGAAGCCTTTTGAGGAACTCTCATTTCCTGGGATTGAGAGCATGGTTAAACAAGAAGATATATGGAGTATGGGATTTGATGCCAGTGCTGGTATGTCAAGTTGTAGCAGTGGCTTTTGGGGTAATCCAATCAACTACGATGTGCCAGAGATGGGAACGTCAGATGGATTGTTTGATATCTGGGACATAGGTGCACTGCAAGCAGCAGGAGGGTCAGGCATTGATAAGTGGCCAGCTGATGAATCTGCATTCGATGAGCGTGCAAGTCAAGATGGATAG

Protein Analysis

453

Amino Acids

50.36

Weight (kDa)

4.77

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 43 - 132 2e-28 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 796
AccB7I CCANNNNNTGG 1 cut(s) 863
AccII CGCG 1 cut(s) 727
AciI CCGC 3 cut(s) 86, 92, 122
AclWI GGATC 2 cut(s) 746, 989
AcoI YGGCCR 2 cut(s) 624, 1310
AcsI RAATTY 3 cut(s) 253, 713, 798
AcuI CTGAAG 3 cut(s) 80, 465, 1011
AfaI GTAC 2 cut(s) 547, 782
AfiI CCNNNNNNNGG 6 cut(s) 34, 35, 166, 863, 1033, 1232
AgsI TTSAA 6 cut(s) 234, 259, 379, 638, 665, 878
AjnI CCWGG 3 cut(s) 457, 1062, 1108
AluBI AGCT 8 cut(s) 64, 204, 279, 292, 350, 426, 551, 1316
AluI AGCT 8 cut(s) 64, 204, 279, 292, 350, 426, 551, 1316
Alw21I GWGCWC 1 cut(s) 1276
Alw26I GTCTC 2 cut(s) 104, 592
Alw44I GTGCAC 1 cut(s) 1272
AlwI GGATC 2 cut(s) 746, 989
AlwNI CAGNNNCTG 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 1043
AoxI GGCC 3 cut(s) 455, 624, 1310
ApaLI GTGCAC 1 cut(s) 1272
ApeKI GCWGC 6 cut(s) 61, 88, 535, 538, 653, 1283
ApoI RAATTY 3 cut(s) 253, 713, 798
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
AspLEI GCGC 3 cut(s) 166, 396, 727
AspS9I GGNCC 3 cut(s) 25, 217, 434
AsuC2I CCSGG 3 cut(s) 29, 161, 250
AsuHPI GGTGA 3 cut(s) 482, 545, 977
AsuII TTCGAA 1 cut(s) 1004
AvaI CYCGRG 1 cut(s) 1043
AvaII GGWCC 3 cut(s) 25, 217, 434
AxyI CCTNAGG 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 1276
BalI TGGCCA 2 cut(s) 626, 1312
Bbv12I GWGCWC 1 cut(s) 1276
BbvI GCAGC 6 cut(s) 73, 100, 547, 550, 665, 1295
BccI CCATC 6 cut(s) 40, 604, 893, 1225, 1238, 1346
BceAI ACGGC 1 cut(s) 109
BcgI CGANNNNNNTGC 2 cut(s) 1322, 1356
BciT130I CCWGG 3 cut(s) 459, 1064, 1110
BclI TGATCA 1 cut(s) 174
BcnI CCSGG 3 cut(s) 29, 161, 250
BcoDI GTCTC 2 cut(s) 104, 592
BfaI CTAG 1 cut(s) 923
BfmI CTRYAG 2 cut(s) 104, 816
BfoI RGCGCY 1 cut(s) 167
BfuAI ACCTGC 1 cut(s) 796
BisI GCNGC 9 cut(s) 62, 86, 89, 92, 122, 536, 539, 654, 1284
BlpI GCTNAGC 1 cut(s) 591
BlsI GCNGC 9 cut(s) 63, 87, 90, 93, 123, 537, 540, 655, 1285
Bme1390I CCNGG 6 cut(s) 29, 161, 250, 459, 1064, 1110
Bme18I GGWCC 3 cut(s) 25, 217, 434
BmeT110I CYCGRG 1 cut(s) 1043
BmgT120I GGNCC 3 cut(s) 25, 217, 434
BmiI GGNNCC 5 cut(s) 27, 199, 218, 219, 491
BmrFI CCNGG 6 cut(s) 29, 161, 250, 459, 1064, 1110
BmrI ACTGGG 1 cut(s) 711
BmsI GCATC 5 cut(s) 498, 621, 983, 1062, 1150
BmuI ACTGGG 1 cut(s) 711
BplI GAGNNNNNCTC 2 cut(s) 1085, 1117
BpmI CTGGAG 4 cut(s) 216, 259, 840, 1052
Bpu1102I GCTNAGC 1 cut(s) 591
Bpu14I TTCGAA 1 cut(s) 1004
BpuMI CCSGG 3 cut(s) 29, 161, 250
Bsa29I ATCGAT 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 248, 1109
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 6 cut(s) 34, 35, 166, 863, 1033, 1232
Bse1I ACTGG 5 cut(s) 27, 436, 706, 1035, 1164
Bse21I CCTNAGG 1 cut(s) 356
BseBI CCWGG 3 cut(s) 459, 1064, 1110
BseCI ATCGAT 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 248, 1109
BseGI GGATG 2 cut(s) 384, 1072
BseLI CCNNNNNNNGG 6 cut(s) 34, 35, 166, 863, 1033, 1232
BseMII CTCAG 3 cut(s) 347, 582, 927
BseNI ACTGG 5 cut(s) 27, 436, 706, 1035, 1164
BseSI GKGCMC 1 cut(s) 1276
BseXI GCAGC 6 cut(s) 73, 100, 547, 550, 665, 1295
BseYI CCCAGC 1 cut(s) 643
Bsh1236I CGCG 1 cut(s) 727
BshFI GGCC 3 cut(s) 457, 626, 1312
BshVI ATCGAT 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 1276
BsiHKCI CYCGRG 1 cut(s) 1043
BsiSI CCGG 3 cut(s) 29, 161, 250
BslFI GGGAC 3 cut(s) 230, 806, 1277
BslI CCNNNNNNNGG 6 cut(s) 34, 35, 166, 863, 1033, 1232
BsmAI GTCTC 2 cut(s) 104, 592
BsmFI GGGAC 3 cut(s) 230, 806, 1277
BsmI GAATGC 2 cut(s) 647, 1328
BsnI GGCC 3 cut(s) 457, 626, 1312
BsoBI CYCGRG 1 cut(s) 1043
Bsp119I TTCGAA 1 cut(s) 1004
Bsp1286I GDGCHC 1 cut(s) 1276
Bsp143I GATC 5 cut(s) 174, 315, 751, 859, 994
Bsp1720I GCTNAGC 1 cut(s) 591
BspACI CCGC 3 cut(s) 86, 92, 122
BspANI GGCC 3 cut(s) 457, 626, 1312
BspCNI CTCAG 3 cut(s) 348, 583, 926
BspDI ATCGAT 1 cut(s) 318
BspFNI CGCG 1 cut(s) 727
BspLI GGNNCC 5 cut(s) 27, 199, 218, 219, 491
BspMAI CTGCAG 2 cut(s) 108, 820
BspMI ACCTGC 1 cut(s) 796
BspPI GGATC 2 cut(s) 746, 989
BspT104I TTCGAA 1 cut(s) 1004
BsrI ACTGG 5 cut(s) 27, 436, 706, 1035, 1164
BssECI CCNNGG 2 cut(s) 248, 1109
BssMI GATC 5 cut(s) 174, 315, 751, 859, 994
Bst2UI CCWGG 3 cut(s) 459, 1064, 1110
Bst4CI ACNGT 1 cut(s) 568
Bst6I CTCTTC 1 cut(s) 665
BstBI TTCGAA 1 cut(s) 1004
BstC8I GCNNGC 5 cut(s) 202, 290, 1281, 1314, 1341
BstDEI CTNAG 3 cut(s) 356, 591, 913
BstF5I GGATG 2 cut(s) 384, 1072
BstFNI CGCG 1 cut(s) 727
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 3 cut(s) 166, 396, 727
BstKTI GATC 5 cut(s) 177, 318, 754, 862, 997
BstMAI GTCTC 2 cut(s) 104, 592
BstMBI GATC 5 cut(s) 174, 315, 751, 859, 994
BstMWI GCNNNNNNNGC 7 cut(s) 91, 244, 285, 347, 535, 653, 1280
BstNI CCWGG 3 cut(s) 459, 1064, 1110
BstSCI CCNGG 6 cut(s) 27, 159, 248, 457, 1062, 1108
BstSFI CTRYAG 2 cut(s) 104, 816
BstSLI GKGCMC 1 cut(s) 1276
BstUI CGCG 1 cut(s) 727
BstV1I GCAGC 6 cut(s) 73, 100, 547, 550, 665, 1295
BstX2I RGATCY 1 cut(s) 994
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 1 cut(s) 994
Bsu15I ATCGAT 1 cut(s) 318
Bsu36I CCTNAGG 1 cut(s) 356
BsuRI GGCC 3 cut(s) 457, 626, 1312
BsuTUI ATCGAT 1 cut(s) 318
BtsCI GGATG 2 cut(s) 384, 1072
BtsI GCAGTG 2 cut(s) 1195, 1274
BtsIMutI CAGTG 5 cut(s) 104, 573, 1171, 1195, 1274
BveI ACCTGC 1 cut(s) 796
Cac8I GCNNGC 5 cut(s) 202, 290, 1281, 1314, 1341
CaiI CAGNNNCTG 1 cut(s) 103
CfoI GCGC 3 cut(s) 166, 396, 727
Cfr13I GGNCC 3 cut(s) 25, 217, 434
ClaI ATCGAT 1 cut(s) 318
Csp6I GTAC 2 cut(s) 546, 781
CviAII CATG 4 cut(s) 402, 808, 863, 1123
CviQI GTAC 2 cut(s) 546, 781
DdeI CTNAG 3 cut(s) 356, 591, 913
DpnI GATC 5 cut(s) 176, 317, 753, 861, 996
DpnII GATC 5 cut(s) 174, 315, 751, 859, 994
EaeI YGGCCR 2 cut(s) 624, 1310
Eam1104I CTCTTC 1 cut(s) 665
EarI CTCTTC 1 cut(s) 665
Eco32I GATATC 1 cut(s) 1258
Eco47I GGWCC 3 cut(s) 25, 217, 434
Eco57I CTGAAG 3 cut(s) 80, 465, 1011
Eco81I CCTNAGG 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 1043
EcoO109I RGGNCCY 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 798
EcoRII CCWGG 3 cut(s) 457, 1062, 1108
EcoRV GATATC 1 cut(s) 1258
FaeI CATG 4 cut(s) 405, 811, 866, 1126
FalI AAGNNNNNCTT 2 cut(s) 984, 1016
FaqI GGGAC 3 cut(s) 230, 806, 1277
FatI CATG 4 cut(s) 401, 807, 862, 1122
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 9 cut(s) 62, 86, 89, 92, 122, 536, 539, 654, 1284
FokI GGATG 2 cut(s) 371, 1079
Fsp4HI GCNGC 9 cut(s) 62, 86, 89, 92, 122, 536, 539, 654, 1284
FspBI CTAG 1 cut(s) 923
GlaI GCGC 3 cut(s) 165, 395, 726
GluI GCNGC 9 cut(s) 62, 86, 89, 92, 122, 536, 539, 654, 1284
GsaI CCCAGC 1 cut(s) 647
GsuI CTGGAG 4 cut(s) 216, 259, 840, 1052
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 3 cut(s) 457, 626, 1312
HapII CCGG 3 cut(s) 29, 161, 250
HhaI GCGC 3 cut(s) 166, 396, 727
Hin1II CATG 4 cut(s) 405, 811, 866, 1126
Hin6I GCGC 3 cut(s) 164, 394, 725
HinP1I GCGC 3 cut(s) 164, 394, 725
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 6 cut(s) 41, 112, 462, 479, 911, 1322
HpaII CCGG 3 cut(s) 29, 161, 250
HphI GGTGA 3 cut(s) 482, 545, 977
Hpy166II GTNNAC 3 cut(s) 154, 523, 1274
Hpy188I TCNGA 4 cut(s) 9, 751, 916, 1243
Hpy188III TCNNGA 5 cut(s) 355, 388, 857, 1043, 1349
Hpy8I GTNNAC 3 cut(s) 154, 523, 1274
HpyAV CCTTC 6 cut(s) 50, 447, 461, 758, 962, 1072
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4IV ACGT 2 cut(s) 140, 1238
HpyF10VI GCNNNNNNNGC 7 cut(s) 91, 244, 285, 347, 535, 653, 1280
HpyF3I CTNAG 3 cut(s) 356, 591, 913
HpySE526I ACGT 2 cut(s) 140, 1238
Hsp92II CATG 4 cut(s) 405, 811, 866, 1126
HspAI GCGC 3 cut(s) 164, 394, 725
KflI GGGWCCC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 5 cut(s) 174, 315, 751, 859, 994
LmnI GCTCC 3 cut(s) 197, 423, 971
Lsp1109I GCAGC 6 cut(s) 73, 100, 547, 550, 665, 1295
LweI GCATC 5 cut(s) 498, 621, 983, 1062, 1150
MaeI CTAG 1 cut(s) 923
MaeII ACGT 2 cut(s) 140, 1238
MaeIII GTNAC 3 cut(s) 928, 985, 1021
MalI GATC 5 cut(s) 176, 317, 753, 861, 996
MboI GATC 5 cut(s) 174, 315, 751, 859, 994
MboII GAAGA 4 cut(s) 391, 682, 1004, 1148
MflI RGATCY 1 cut(s) 994
MhlI GDGCHC 1 cut(s) 1276
MlsI TGGCCA 2 cut(s) 626, 1312
MluCI AATT 8 cut(s) 50, 253, 268, 417, 713, 798, 878, 906
MluNI TGGCCA 2 cut(s) 626, 1312
MlyI GAGTC 5 cut(s) 50, 106, 456, 488, 905
Mox20I TGGCCA 2 cut(s) 626, 1312
MscI TGGCCA 2 cut(s) 626, 1312
MseI TTAA 6 cut(s) 294, 720, 905, 1038, 1073, 1128
Msp20I TGGCCA 2 cut(s) 626, 1312
MspA1I CMGCKG 2 cut(s) 64, 1316
MspI CCGG 3 cut(s) 29, 161, 250
MspR9I CCNGG 6 cut(s) 29, 161, 250, 459, 1064, 1110
Mva1269I GAATGC 2 cut(s) 647, 1328
MvaI CCWGG 3 cut(s) 459, 1064, 1110
MvnI CGCG 1 cut(s) 727
MwoI GCNNNNNNNGC 7 cut(s) 91, 244, 285, 347, 535, 653, 1280
NciI CCSGG 3 cut(s) 29, 161, 250
NdeII GATC 5 cut(s) 174, 315, 751, 859, 994
NlaIII CATG 4 cut(s) 405, 811, 866, 1126
NlaIV GGNNCC 5 cut(s) 27, 199, 218, 219, 491
NmuCI GTSAC 1 cut(s) 1021
NspV TTCGAA 1 cut(s) 1004
PctI GAATGC 2 cut(s) 647, 1328
PfeI GAWTC 1 cut(s) 1322
PflMI CCANNNNNTGG 1 cut(s) 863
PfoI TCCNGGA 1 cut(s) 1062
PkrI GCNGC 9 cut(s) 63, 87, 90, 93, 123, 537, 540, 655, 1285
PleI GAGTC 5 cut(s) 49, 106, 456, 487, 905
PpsI GAGTC 5 cut(s) 49, 106, 456, 487, 905
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 3 cut(s) 457, 1062, 1108
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 3 cut(s) 457, 1062, 1108
PspN4I GGNNCC 5 cut(s) 27, 199, 218, 219, 491
PspPI GGNCC 3 cut(s) 25, 217, 434
PspPPI RGGWCCY 1 cut(s) 217
PsrI GAACNNNNNNTAC 2 cut(s) 822, 854
PstI CTGCAG 2 cut(s) 108, 820
PstNI CAGNNNCTG 1 cut(s) 103
PsuI RGATCY 1 cut(s) 994
PvuII CAGCTG 2 cut(s) 64, 1316
RsaI GTAC 2 cut(s) 547, 782
RsaNI GTAC 2 cut(s) 546, 781
SaqAI TTAA 6 cut(s) 294, 720, 905, 1038, 1073, 1128
SatI GCNGC 9 cut(s) 62, 86, 89, 92, 122, 536, 539, 654, 1284
Sau3AI GATC 5 cut(s) 174, 315, 751, 859, 994
Sau96I GGNCC 3 cut(s) 25, 217, 434
SchI GAGTC 5 cut(s) 50, 106, 456, 488, 905
ScrFI CCNGG 6 cut(s) 29, 161, 250, 459, 1064, 1110
SduI GDGCHC 1 cut(s) 1276
SfaNI GCATC 5 cut(s) 498, 621, 983, 1062, 1150
SfcI CTRYAG 2 cut(s) 104, 816
SfuI TTCGAA 1 cut(s) 1004
SinI GGWCC 3 cut(s) 25, 217, 434
Sse9I AATT 8 cut(s) 50, 253, 268, 417, 713, 798, 878, 906
SsiI CCGC 3 cut(s) 86, 92, 122
SspMI CTAG 1 cut(s) 923
StyD4I CCNGG 6 cut(s) 27, 159, 248, 457, 1062, 1108
TaaI ACNGT 1 cut(s) 568
TaiI ACGT 2 cut(s) 143, 1241
TaqI TCGA 5 cut(s) 44, 318, 465, 1004, 1332
TasI AATT 8 cut(s) 50, 253, 268, 417, 713, 798, 878, 906
TauI GCSGC 3 cut(s) 88, 94, 124
TfiI GAWTC 1 cut(s) 1322
Tru1I TTAA 6 cut(s) 294, 720, 905, 1038, 1073, 1128
Tru9I TTAA 6 cut(s) 294, 720, 905, 1038, 1073, 1128
TscAI CASTG 5 cut(s) 104, 573, 1171, 1195, 1281
TseFI GTSAC 1 cut(s) 1021
TseI GCWGC 6 cut(s) 61, 88, 535, 538, 653, 1283
Tsp45I GTSAC 1 cut(s) 1021
TspDTI ATGAA 7 cut(s) 360, 575, 588, 791, 933, 1091, 1335
TspRI CASTG 5 cut(s) 104, 573, 1171, 1195, 1281
Van91I CCANNNNNTGG 1 cut(s) 863
VneI GTGCAC 1 cut(s) 1272
VpaK11BI GGWCC 3 cut(s) 25, 217, 434
XapI RAATTY 3 cut(s) 253, 713, 798
XspI CTAG 1 cut(s) 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.