Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006133

Physical Location & Seq

Genomic Coordinates Forward (+)

17960581 .. 17961236

Gene Structure 656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43785

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTATCCGAGAGATGACGAGAGGTTTCCAAAACCTCCTACGTCAATTTCGGGTCAATTGGACCCCGAAATGCCAGAGCCGCTGCTCGGTGGGGTTGCGATGGATATAGAAGGGATGTCTGGTGGGAGTAGCGACTGTGTGGGAGTGCCGCAGCCGCTTCAGTGTCTGCAGGGGACTCCGGTGCCGCCGTTTCTGTCCAAGACGTTTGATTTGGTGGACGACCCGTCGCTGGATTTGATCATATCGTGGGGTTCTACTGGAAGAAGCTTCGTGGTTTGGGACCCTGTGGAGTTTTCGAGGCTCATCTTGCCTCGGAATTTCAAGCACAGCAATTTCTCGAGCTTTGTCCGCCAGCTTAATACTTATGTGGGTATTTGCAGTAGCACAGCCTCTATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

133

Amino Acids

14.48

Weight (kDa)

4.51

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	64 - 122	1.1e-18	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03720 AT5G03720
fragaria_vesca	FvH4_6g17890
malus_domestica	MD12G1017900.v1.1 MD14G1015900.v1.1
prunus_persica	Prupe.7G117200_v2.0.a1 Prupe.7G117200_v2.0.a1 Prupe.7G117200_v2.0.a1 Prupe.7G117200_v2.0.a1 Prupe.7G117200_v2.0.a1 Prupe.7G117200_v2.0.a1
pyrus_communis	pycom03g05130 pycom12g01490 pycom14g01370
rosa_chinensis	RchiOBHm_Chr3g0472131 RchiOBHm_Chr3g0472141
rosa_laevigata	RLG00000024102
rosa_multiflora	Rmu_sc0002532.1_g000026
rosa_roxburghii	Rroxscaffold_6G00409220
rosa_rugosa	Rorug03G0122500 Rorug03G0122600
rosa_samantha	Rh3AG174300 Rh3BG199700 Rh3CG190800 Rh3CG198200 Rh3DG174800
rosa_wichuraiana	Rw3G016650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AciI	CCGC	5 cut(s)	80, 149, 155, 185, 349
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	86, 229
AgsI	TTSAA	1 cut(s)	322
AhdI	GACNNNNNGTC	1 cut(s)	223
AluBI	AGCT	3 cut(s)	267, 342, 355
AluI	AGCT	3 cut(s)	267, 342, 355
AlwNI	CAGNNNCTG	1 cut(s)	166
Ama87I	CYCGRG	1 cut(s)	337
ApeKI	GCWGC	2 cut(s)	82, 151
ApoI	RAATTY	1 cut(s)	316
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
AspS9I	GGNCC	2 cut(s)	61, 280
AvaI	CYCGRG	1 cut(s)	337
AvaII	GGWCC	2 cut(s)	61, 280
BanI	GGYRCC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	69, 163
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	172
BciVI	GTATCC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	6 cut(s)	80, 83, 149, 152, 155, 185
BlsI	GCNGC	6 cut(s)	81, 84, 150, 153, 156, 186
Bme18I	GGWCC	2 cut(s)	61, 280
BmeRI	GACNNNNNGTC	1 cut(s)	223
BmeT110I	CYCGRG	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	61, 280
BmiI	GGNNCC	4 cut(s)	63, 183, 281, 282
BsaJI	CCNNGG	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 229
Bse1I	ACTGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	86, 229
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	69, 163
BshNI	GGYRCC	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	2 cut(s)	187, 293
BslI	CCNNNNNNNGG	2 cut(s)	86, 229
BsmFI	GGGAC	2 cut(s)	187, 293
BsoBI	CYCGRG	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	5 cut(s)	80, 149, 155, 185, 349
BspLI	GGNNCC	4 cut(s)	63, 183, 281, 282
BspMAI	CTGCAG	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 154, 307, 348
BstSFI	CTRYAG	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	69, 163
BsuI	GTATCC	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	353
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	61, 280
CviJI	RGCY	8 cut(s)	79, 154, 267, 301, 342, 355, 389, 399
CviKI_1	RGCY	8 cut(s)	79, 154, 267, 301, 342, 355, 389, 399
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
DriI	GACNNNNNGTC	1 cut(s)	223
Eam1105I	GACNNNNNGTC	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	338
Eco47I	GGWCC	2 cut(s)	61, 280
Eco57I	CTGAAG	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	280
FaiI	YATR	3 cut(s)	107, 242, 366
FaqI	GGGAC	2 cut(s)	187, 293
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	6 cut(s)	80, 83, 149, 152, 155, 185
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	6 cut(s)	80, 83, 149, 152, 155, 185
GluI	GCNGC	6 cut(s)	80, 83, 149, 152, 155, 185
HapII	CCGG	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	265
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	2 cut(s)	9, 315
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	2 cut(s)	41, 203
HpyCH4V	TGCA	2 cut(s)	169, 378
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 154, 307, 348
HpySE526I	ACGT	2 cut(s)	41, 203
KflI	GGGWCCC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	237
LpnPI	CCDG	8 cut(s)	87, 105, 155, 192, 215, 243, 297, 365
Lsp1109I	GCAGC	2 cut(s)	69, 163
MaeII	ACGT	2 cut(s)	41, 203
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	1 cut(s)	273
MfeI	CAATTG	1 cut(s)	56
MluCI	AATT	4 cut(s)	45, 56, 316, 331
MlyI	GAGTC	1 cut(s)	169
MnlI	CCTC	5 cut(s)	15, 45, 291, 321, 400
MseI	TTAA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	179
MunI	CAATTG	1 cut(s)	56
MwoI	GCNNNNNNNGC	4 cut(s)	79, 154, 307, 348
NdeII	GATC	1 cut(s)	237
NlaIV	GGNNCC	4 cut(s)	63, 183, 281, 282
PaeR7I	CTCGAG	1 cut(s)	337
PkrI	GCNGC	6 cut(s)	81, 84, 150, 153, 156, 186
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
PspN4I	GGNNCC	4 cut(s)	63, 183, 281, 282
PspPI	GGNCC	2 cut(s)	61, 280
PspPPI	RGGWCCY	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	171
PstNI	CAGNNNCTG	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	6 cut(s)	80, 83, 149, 152, 155, 185
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	2 cut(s)	61, 280
SchI	GAGTC	1 cut(s)	169
SetI	ASST	7 cut(s)	26, 37, 44, 206, 269, 344, 357
SfcI	CTRYAG	1 cut(s)	167
Sfr274I	CTCGAG	1 cut(s)	337
SinI	GGWCC	2 cut(s)	61, 280
SlaI	CTCGAG	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	4 cut(s)	45, 56, 316, 331
SsiI	CCGC	5 cut(s)	80, 149, 155, 185, 349
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	2 cut(s)	44, 206
TaqI	TCGA	2 cut(s)	296, 338
TasI	AATT	4 cut(s)	45, 56, 316, 331
TauI	GCSGC	4 cut(s)	82, 151, 157, 187
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	167
TseI	GCWGC	2 cut(s)	82, 151
TspRI	CASTG	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	61, 280
XapI	RAATTY	1 cut(s)	316
XhoI	CTCGAG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.