Rmu_sc0002532.1_g000026

Heat Stress Transcription Factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002532.1
Physical Location & Seq
Forward (+)
132771 .. 134958
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002532.1_g000026.1.cds

Sequence Viewer

Length: 1353 bp
atgccagagccgctgctcggtggggttgcgatggatatagaagggatgtctggtgggagtagcgactgtgtgggagtgccgcagccgcttcagtgtctgcaggggactccggtgccgccatttctgtccaagacatttgatttggtggacgacccgtcgctggatttgatcatatcgtggggttctactggaagaagcttcgtggtttgggaccctatggagttttcgaggctcatcttgcctcggaatttcaagcacagcaatttctcgagctttgtccgccagcttaatacttatggttttcgcaagatcgatacagataagtgggagtttgcaaatgaagctttcctgaggggcaaaagacatttgttgaagaacatccagaggcgcaagtcatctcagtccttgcagattgggagctctactgggccttctgctgaagcaggaaggcctggactcgaaggtgagatagagtcactgaggaaccagaggagtctgttaatgcaggaggtcgttgacttgcaacagcagcagcgaggtacagttcaacatatgaaagcagtgaatgagaggctgcagtctgctgagcagagacagcagcagatggtttctttcttggccaaggtgcttcaaaacccagcattcttagccaggcttcaacggaagaaagaacagaaaggtataggctcttcctctgggcagaggaaatttgttaaggcgcgtgaacgtgaactaggtagatctgattcttatgtggaagggcaaattgtgaagtacgaacctgcttggagaaaccataccatgtcgtctgcagtcccagatgtaaatccagttcctattgaaaactctccagattatggtatgccatttcaatgtgagaatattgcatttgatgggttaatggtctcggatgaactagaagtaacaccagagcaagagggtgaaggggcatcaagcatggtaattgaagatccactttccaaaggcaagagcgttgtgacccaacaacaagaggttaatcccgagccttacatctctttccaggaggatttgatgaaggagaggagtacttttgaggaactctcatttccagggattgagagcatggttaaaccagatgatgtatggaatatgggttttgatgccagtgctggtatgtcaagttctactgggttttggagtaatccgatcaactgtgatatgccagagatgggaatcccagacggattgtttgatatctgggacataggtgcactgcaagcagcaggagggtctggcattgataagtggccagctgatgaatctgcattcgatgagcgtgcaagtcaagatgaacagccaaaagatagatga

Protein Analysis

450

Amino Acids

50.13

Weight (kDa)

4.81

Isoelectric Point (pI)

60.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 790
AccB1I GGYRCC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 857
AccII CGCG 1 cut(s) 721
AciI CCGC 5 cut(s) 11, 80, 86, 116, 280
AclWI GGATC 1 cut(s) 965
AcoI YGGCCR 2 cut(s) 618, 1289
AcsI RAATTY 2 cut(s) 247, 707
AcuI CTGAAG 2 cut(s) 74, 459
AfaI GTAC 3 cut(s) 541, 776, 1069
AfiI CCNNNNNNNGG 4 cut(s) 17, 160, 857, 1211
AgsI TTSAA 8 cut(s) 253, 373, 548, 632, 659, 842, 872, 968
AhdI GACNNNNNGTC 1 cut(s) 154
AjnI CCWGG 4 cut(s) 451, 650, 1041, 1090
AluBI AGCT 6 cut(s) 198, 273, 286, 344, 420, 1295
AluI AGCT 6 cut(s) 198, 273, 286, 344, 420, 1295
Alw21I GWGCWC 2 cut(s) 422, 1255
Alw26I GTCTC 2 cut(s) 586, 910
Alw44I GTGCAC 1 cut(s) 1251
AlwI GGATC 1 cut(s) 965
AlwNI CAGNNNCTG 1 cut(s) 97
Ama87I CYCGRG 2 cut(s) 268, 1022
AoxI GGCC 4 cut(s) 428, 449, 618, 1289
ApaLI GTGCAC 1 cut(s) 1251
ApeKI GCWGC 7 cut(s) 13, 82, 529, 532, 574, 598, 1262
ApoI RAATTY 2 cut(s) 247, 707
ArsI GACNNNNNNTTYG 4 cut(s) 124, 156, 1214, 1246
AspLEI GCGC 2 cut(s) 390, 721
AspS9I GGNCC 2 cut(s) 211, 428
AsuHPI GGTGA 2 cut(s) 476, 953
AvaI CYCGRG 2 cut(s) 268, 1022
AvaII GGWCC 1 cut(s) 211
AxyI CCTNAGG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 1255
BalI TGGCCA 2 cut(s) 620, 1291
BanI GGYRCC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 422
BarI GAAGNNNNNNTAC 2 cut(s) 673, 705
Bbv12I GWGCWC 2 cut(s) 422, 1255
BbvI GCAGC 6 cut(s) 94, 541, 544, 561, 610, 1274
BccI CCATC 4 cut(s) 25, 598, 887, 1204
BcgI CGANNNNNNTGC 2 cut(s) 1301, 1335
BciT130I CCWGG 4 cut(s) 453, 652, 1043, 1092
BclI TGATCA 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 586, 910
BfaI CTAG 2 cut(s) 734, 917
BfmI CTRYAG 3 cut(s) 98, 575, 810
BfuAI ACCTGC 1 cut(s) 790
BglII AGATCT 1 cut(s) 740
BlpI GCTNAGC 1 cut(s) 585
BmcAI AGTACT 1 cut(s) 1069
Bme1390I CCNGG 4 cut(s) 453, 652, 1043, 1092
Bme18I GGWCC 1 cut(s) 211
BmeRI GACNNNNNGTC 1 cut(s) 154
BmeT110I CYCGRG 2 cut(s) 268, 1022
BmgT120I GGNCC 2 cut(s) 211, 428
BmiI GGNNCC 4 cut(s) 114, 212, 213, 485
BmrFI CCNGG 4 cut(s) 453, 652, 1043, 1092
BmrI ACTGGG 2 cut(s) 435, 1179
BmsI GCATC 2 cut(s) 959, 1132
BmuI ACTGGG 2 cut(s) 435, 1179
BplI GAGNNNNNCTC 2 cut(s) 1067, 1099
BpmI CTGGAG 1 cut(s) 834
Bpu1102I GCTNAGC 1 cut(s) 585
Bsa29I ATCGAT 1 cut(s) 312
BsaBI GATNNNNATC 2 cut(s) 825, 1214
BsaI GGTCTC 1 cut(s) 910
BsaJI CCNNGG 3 cut(s) 242, 621, 1091
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 160, 857, 1211
Bse1I ACTGG 5 cut(s) 193, 430, 830, 1146, 1174
Bse21I CCTNAGG 1 cut(s) 350
Bse8I GATNNNNATC 2 cut(s) 825, 1214
BseBI CCWGG 4 cut(s) 453, 652, 1043, 1092
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 242, 621, 1091
BseGI GGATG 3 cut(s) 51, 378, 916
BseJI GATNNNNATC 2 cut(s) 825, 1214
BseLI CCNNNNNNNGG 4 cut(s) 17, 160, 857, 1211
BseMII CTCAG 4 cut(s) 341, 413, 470, 576
BseNI ACTGG 5 cut(s) 193, 430, 830, 1146, 1174
BseRI GAGGAG 2 cut(s) 505, 1078
BseSI GKGCMC 1 cut(s) 1255
BseXI GCAGC 6 cut(s) 94, 541, 544, 561, 610, 1274
BseYI CCCAGC 1 cut(s) 637
Bsh1236I CGCG 1 cut(s) 721
BshFI GGCC 4 cut(s) 430, 451, 620, 1291
BshNI GGYRCC 1 cut(s) 112
BshVI ATCGAT 1 cut(s) 312
BsiHKAI GWGCWC 2 cut(s) 422, 1255
BsiHKCI CYCGRG 2 cut(s) 268, 1022
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 4 cut(s) 118, 224, 800, 1256
BslI CCNNNNNNNGG 4 cut(s) 17, 160, 857, 1211
BsmAI GTCTC 2 cut(s) 586, 910
BsmFI GGGAC 4 cut(s) 118, 224, 800, 1256
BsmI GAATGC 2 cut(s) 641, 1307
BsnI GGCC 4 cut(s) 430, 451, 620, 1291
Bso31I GGTCTC 1 cut(s) 910
BsoBI CYCGRG 2 cut(s) 268, 1022
Bsp1286I GDGCHC 2 cut(s) 422, 1255
Bsp143I GATC 5 cut(s) 168, 309, 740, 970, 1188
Bsp1720I GCTNAGC 1 cut(s) 585
BspACI CCGC 5 cut(s) 11, 80, 86, 116, 280
BspANI GGCC 4 cut(s) 430, 451, 620, 1291
BspCNI CTCAG 4 cut(s) 342, 412, 471, 577
BspDI ATCGAT 1 cut(s) 312
BspFNI CGCG 1 cut(s) 721
BspLI GGNNCC 4 cut(s) 114, 212, 213, 485
BspMAI CTGCAG 3 cut(s) 102, 579, 814
BspMI ACCTGC 1 cut(s) 790
BspPI GGATC 1 cut(s) 965
BspQI GCTCTTC 1 cut(s) 694
BspT107I GGYRCC 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 910
BsrI ACTGG 5 cut(s) 193, 430, 830, 1146, 1174
BssECI CCNNGG 3 cut(s) 242, 621, 1091
BssMI GATC 5 cut(s) 168, 309, 740, 970, 1188
BssT1I CCWWGG 1 cut(s) 621
Bst2UI CCWGG 4 cut(s) 453, 652, 1043, 1092
Bst4CI ACNGT 3 cut(s) 68, 544, 1196
Bst6I CTCTTC 1 cut(s) 694
BstC8I GCNNGC 4 cut(s) 284, 1260, 1293, 1320
BstDEI CTNAG 5 cut(s) 350, 399, 479, 585, 646
BstF5I GGATG 3 cut(s) 51, 378, 916
BstFNI CGCG 1 cut(s) 721
BstHHI GCGC 2 cut(s) 390, 721
BstKTI GATC 5 cut(s) 171, 312, 743, 973, 1191
BstMAI GTCTC 2 cut(s) 586, 910
BstMBI GATC 5 cut(s) 168, 309, 740, 970, 1188
BstMWI GCNNNNNNNGC 9 cut(s) 10, 85, 238, 279, 341, 529, 595, 647, 1259
BstNI CCWGG 4 cut(s) 453, 652, 1043, 1092
BstSCI CCNGG 4 cut(s) 451, 650, 1041, 1090
BstSFI CTRYAG 3 cut(s) 98, 575, 810
BstSLI GKGCMC 1 cut(s) 1255
BstUI CGCG 1 cut(s) 721
BstV1I GCAGC 6 cut(s) 94, 541, 544, 561, 610, 1274
BstX2I RGATCY 2 cut(s) 740, 970
BstYI RGATCY 2 cut(s) 740, 970
Bsu15I ATCGAT 1 cut(s) 312
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 4 cut(s) 430, 451, 620, 1291
BsuTUI ATCGAT 1 cut(s) 312
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 3 cut(s) 51, 378, 916
BtsI GCAGTG 2 cut(s) 567, 1253
BtsIMutI CAGTG 5 cut(s) 98, 476, 567, 1153, 1253
BveI ACCTGC 1 cut(s) 790
Cac8I GCNNGC 4 cut(s) 284, 1260, 1293, 1320
CaiI CAGNNNCTG 1 cut(s) 97
CfoI GCGC 2 cut(s) 390, 721
Cfr13I GGNCC 2 cut(s) 211, 428
ClaI ATCGAT 1 cut(s) 312
Csp6I GTAC 3 cut(s) 540, 775, 1068
CviAII CATG 3 cut(s) 802, 958, 1105
CviQI GTAC 3 cut(s) 540, 775, 1068
DdeI CTNAG 5 cut(s) 350, 399, 479, 585, 646
DpnI GATC 5 cut(s) 170, 311, 742, 972, 1190
DpnII GATC 5 cut(s) 168, 309, 740, 970, 1188
DriI GACNNNNNGTC 1 cut(s) 154
EaeI YGGCCR 2 cut(s) 618, 1289
Eam1104I CTCTTC 1 cut(s) 694
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 694
EciI GGCGGA 1 cut(s) 269
Ecl136II GAGCTC 1 cut(s) 420
Eco130I CCWWGG 1 cut(s) 621
Eco147I AGGCCT 1 cut(s) 451
Eco24I GRGCYC 1 cut(s) 422
Eco31I GGTCTC 1 cut(s) 910
Eco32I GATATC 1 cut(s) 1237
Eco47I GGWCC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 420
Eco57I CTGAAG 2 cut(s) 74, 459
Eco81I CCTNAGG 1 cut(s) 350
Eco88I CYCGRG 2 cut(s) 268, 1022
EcoICRI GAGCTC 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 4 cut(s) 451, 650, 1041, 1090
EcoRV GATATC 1 cut(s) 1237
EcoT14I CCWWGG 1 cut(s) 621
EcoT38I GRGCYC 1 cut(s) 422
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 3 cut(s) 805, 961, 1108
FalI AAGNNNNNCTT 2 cut(s) 960, 992
FaqI GGGAC 4 cut(s) 118, 224, 800, 1256
FatI CATG 3 cut(s) 801, 957, 1104
FauNDI CATATG 1 cut(s) 552
FbaI TGATCA 1 cut(s) 168
FokI GGATG 3 cut(s) 58, 365, 923
FriOI GRGCYC 1 cut(s) 422
FspBI CTAG 2 cut(s) 734, 917
GlaI GCGC 2 cut(s) 389, 720
GsaI CCCAGC 1 cut(s) 641
GsuI CTGGAG 1 cut(s) 834
HaeIII GGCC 4 cut(s) 430, 451, 620, 1291
HapII CCGG 1 cut(s) 110
HhaI GCGC 2 cut(s) 390, 721
Hin1II CATG 3 cut(s) 805, 961, 1108
Hin6I GCGC 2 cut(s) 388, 719
HinP1I GCGC 2 cut(s) 388, 719
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 2 cut(s) 196, 342
HinfI GANTC 7 cut(s) 106, 456, 473, 493, 746, 1215, 1301
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 476, 953
Hpy166II GTNNAC 5 cut(s) 148, 517, 725, 731, 1253
Hpy188I TCNGA 4 cut(s) 246, 745, 910, 1188
Hpy188III TCNNGA 6 cut(s) 268, 349, 382, 851, 1022, 1328
Hpy8I GTNNAC 5 cut(s) 148, 517, 725, 731, 1253
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 7 cut(s) 35, 441, 441, 455, 752, 938, 1051
HpyCH4III ACNGT 3 cut(s) 68, 544, 1196
HpyCH4IV ACGT 1 cut(s) 727
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 85, 238, 279, 341, 529, 595, 647, 1259
HpyF3I CTNAG 5 cut(s) 350, 399, 479, 585, 646
HpySE526I ACGT 1 cut(s) 727
Hsp92II CATG 3 cut(s) 805, 961, 1108
HspAI GCGC 2 cut(s) 388, 719
KflI GGGWCCC 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 5 cut(s) 168, 309, 740, 970, 1188
LguI GCTCTTC 1 cut(s) 694
LmnI GCTCC 1 cut(s) 417
Lsp1109I GCAGC 6 cut(s) 94, 541, 544, 561, 610, 1274
LweI GCATC 2 cut(s) 959, 1132
MaeI CTAG 2 cut(s) 734, 917
MaeII ACGT 1 cut(s) 727
MaeIII GTNAC 3 cut(s) 474, 922, 997
MalI GATC 5 cut(s) 170, 311, 742, 972, 1190
MboI GATC 5 cut(s) 168, 309, 740, 970, 1188
MboII GAAGA 5 cut(s) 204, 385, 676, 681, 980
MflI RGATCY 2 cut(s) 740, 970
MhlI GDGCHC 2 cut(s) 422, 1255
MlsI TGGCCA 2 cut(s) 620, 1291
MluCI AATT 5 cut(s) 247, 262, 707, 765, 963
MluNI TGGCCA 2 cut(s) 620, 1291
MlyI GAGTC 4 cut(s) 100, 450, 482, 502
Mox20I TGGCCA 2 cut(s) 620, 1291
MscI TGGCCA 2 cut(s) 620, 1291
MseI TTAA 6 cut(s) 288, 500, 714, 899, 1017, 1110
MslI CAYNNNNRTG 1 cut(s) 871
Msp20I TGGCCA 2 cut(s) 620, 1291
MspA1I CMGCKG 2 cut(s) 13, 1295
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 4 cut(s) 453, 652, 1043, 1092
Mva1269I GAATGC 2 cut(s) 641, 1307
MvaI CCWGG 4 cut(s) 453, 652, 1043, 1092
MvnI CGCG 1 cut(s) 721
MwoI GCNNNNNNNGC 9 cut(s) 10, 85, 238, 279, 341, 529, 595, 647, 1259
NdeI CATATG 1 cut(s) 552
NdeII GATC 5 cut(s) 168, 309, 740, 970, 1188
NlaIII CATG 3 cut(s) 805, 961, 1108
NlaIV GGNNCC 4 cut(s) 114, 212, 213, 485
NmuCI GTSAC 2 cut(s) 474, 997
PaeR7I CTCGAG 1 cut(s) 268
PceI AGGCCT 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 694
PctI GAATGC 2 cut(s) 641, 1307
PfeI GAWTC 3 cut(s) 746, 1215, 1301
PflMI CCANNNNNTGG 1 cut(s) 857
PfoI TCCNGGA 1 cut(s) 1041
PleI GAGTC 4 cut(s) 100, 450, 481, 501
PpsI GAGTC 4 cut(s) 100, 450, 481, 501
PpuMI RGGWCCY 1 cut(s) 211
Psp124BI GAGCTC 1 cut(s) 422
Psp5II RGGWCCY 1 cut(s) 211
Psp6I CCWGG 4 cut(s) 451, 650, 1041, 1090
PspFI CCCAGC 1 cut(s) 637
PspGI CCWGG 4 cut(s) 451, 650, 1041, 1090
PspN4I GGNNCC 4 cut(s) 114, 212, 213, 485
PspPI GGNCC 2 cut(s) 211, 428
PspPPI RGGWCCY 1 cut(s) 211
PsrI GAACNNNNNNTAC 4 cut(s) 816, 848, 1147, 1179
PstI CTGCAG 3 cut(s) 102, 579, 814
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 2 cut(s) 740, 970
PvuII CAGCTG 1 cut(s) 1295
RsaI GTAC 3 cut(s) 541, 776, 1069
RsaNI GTAC 3 cut(s) 540, 775, 1068
RseI CAYNNNNRTG 1 cut(s) 871
SacI GAGCTC 1 cut(s) 422
SapI GCTCTTC 1 cut(s) 694
SaqAI TTAA 6 cut(s) 288, 500, 714, 899, 1017, 1110
Sau3AI GATC 5 cut(s) 168, 309, 740, 970, 1188
Sau96I GGNCC 2 cut(s) 211, 428
ScaI AGTACT 1 cut(s) 1069
SchI GAGTC 4 cut(s) 100, 450, 482, 502
ScrFI CCNGG 4 cut(s) 453, 652, 1043, 1092
SduI GDGCHC 2 cut(s) 422, 1255
SfaNI GCATC 2 cut(s) 959, 1132
SfcI CTRYAG 3 cut(s) 98, 575, 810
Sfr274I CTCGAG 1 cut(s) 268
SinI GGWCC 1 cut(s) 211
SlaI CTCGAG 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 871
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 5 cut(s) 247, 262, 707, 765, 963
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 5 cut(s) 11, 80, 86, 116, 280
SspI AATATT 1 cut(s) 883
SspMI CTAG 2 cut(s) 734, 917
SstI GAGCTC 1 cut(s) 422
StuI AGGCCT 1 cut(s) 451
StyD4I CCNGG 4 cut(s) 451, 650, 1041, 1090
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 3 cut(s) 68, 544, 1196
TaiI ACGT 1 cut(s) 730
TaqI TCGA 5 cut(s) 227, 269, 312, 459, 1311
TasI AATT 5 cut(s) 247, 262, 707, 765, 963
TatI WGTACW 1 cut(s) 1067
TauI GCSGC 4 cut(s) 13, 82, 88, 118
TfiI GAWTC 3 cut(s) 746, 1215, 1301
Tru1I TTAA 6 cut(s) 288, 500, 714, 899, 1017, 1110
Tru9I TTAA 6 cut(s) 288, 500, 714, 899, 1017, 1110
TscAI CASTG 5 cut(s) 98, 483, 567, 1153, 1260
TseFI GTSAC 2 cut(s) 474, 997
TseI GCWGC 7 cut(s) 13, 82, 529, 532, 574, 598, 1262
Tsp45I GTSAC 2 cut(s) 474, 997
TspDTI ATGAA 6 cut(s) 354, 569, 927, 1070, 1314, 1347
TspGWI ACGGA 2 cut(s) 676, 1239
TspRI CASTG 5 cut(s) 98, 483, 567, 1153, 1260
Van91I CCANNNNNTGG 1 cut(s) 857
VneI GTGCAC 1 cut(s) 1251
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 2 cut(s) 247, 707
XcmI CCANNNNNNNNNTGG 1 cut(s) 1122
XhoI CTCGAG 1 cut(s) 268
XspI CTAG 2 cut(s) 734, 917
ZrmI AGTACT 1 cut(s) 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.