Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010394

Physical Location & Seq

Genomic Coordinates Forward (+)

1004782 .. 1006631

Gene Structure 1850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGTGGTCAACAACGAGCAACGTAGAAAACGTGAGAGTAGCTTTCATGCCACCGCCATGGCCGGAGTCTAGTTCCTTTAACTCGCTCCACAGCTTCAACTTTGATCCTTACGCAGGAAATTCATATACGCCTGGCGATACACAAACCGGACCGGTTATCTCTGTACCGGAATCAGAAAAGATCATGAATGCGTACCGATTTCCGAACAACAACAATGAGATGATAAAAAAGAAGAGACTAACGAGTGGACAATTAGCTTCACTTGAGCGAAGTTTTCAAGAAGAGATCAAATTAGATTCAGACAGGAAGGTGAAGCTGTCGAGAGAGCTCGGTCTGCAGCCACGTCAGATAGCAGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGGCGAAGCAGCTTGAGCAGTTGTACGACTCGCTTAGACAAGAGTACGACGTCGTTTCTAGGGAGAAACAAATGTTACACGATGAGGTGAAGAAGCTGAGAGCTTTACTAAGAGACCAGGGTTTGATCAAGAAGCAAATCTCTGCCGGGACCATCAAAGTTTCCGGTGAGGAAGACACGGTGGAGATTTCATCGGTGGTGGTAGCTCATCCAAGAACGGAGAATATGAACGCAAATCAAATCACCGGAGGGAATCAAGTTTACGGTCAATACAACAATCCGATGCTGGTTGCTTCCTCTGGCTGGCCGTCATACCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009965 GO:0010016 GO:0010022 GO:0010073 GO:0010432 GO:0010433 GO:0010434 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043565 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

235

Amino Acids

26.84

Weight (kDa)

8.98

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	78 - 130	2.8e-17	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03790 AT5G03790
fragaria_vesca	FvH4_6g17450 FvH4_6g17450 FvH4_6g17450
malus_domestica	MD12G1100600.v1.1 MD14G1094700.v1.1
prunus_persica	Prupe.7G121100_v2.0.a1
pyrus_communis	pycom12g09900 pycom14g09290
rosa_chinensis	RchiOBHm_Chr3g0471691
rosa_laevigata	RLG00000024142
rosa_multiflora	Rmu_sc0005631.1_g000017
rosa_roxburghii	Rroxscaffold_6G00409650
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh3AG170200 Rh3BG195900 Rh3CG186600 Rh3CG195100 Rh3DG179000
rosa_wichuraiana	Rw0G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	441
AciI	CCGC	2 cut(s)	56, 373
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	2 cut(s)	62, 692
AcsI	RAATTY	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	4 cut(s)	168, 197, 413, 434
AfiI	CCNNNNNNNGG	2 cut(s)	116, 690
AgeI	ACCGGT	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	100, 281
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	2 cut(s)	133, 504
AluBI	AGCT	9 cut(s)	44, 96, 260, 319, 331, 400, 484, 491, 593
AluI	AGCT	9 cut(s)	44, 96, 260, 319, 331, 400, 484, 491, 593
Alw21I	GWGCWC	2 cut(s)	333, 382
Alw26I	GTCTC	2 cut(s)	232, 495
Alw44I	GTGCAC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	2 cut(s)	62, 692
ApaLI	GTGCAC	1 cut(s)	378
ApeKI	GCWGC	2 cut(s)	340, 397
ApoI	RAATTY	1 cut(s)	121
AsiGI	ACCGGT	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	152, 537
AsuC2I	CCSGG	1 cut(s)	535
AsuHPI	GGTGA	4 cut(s)	325, 487, 566, 622
AvaII	GGWCC	2 cut(s)	152, 537
BaeGI	GKGCMC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	567
Bbv12I	GWGCWC	2 cut(s)	333, 382
BbvI	GCAGC	2 cut(s)	352, 409
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	2 cut(s)	360, 679
BciT130I	CCWGG	2 cut(s)	135, 506
BclI	TGATCA	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	535
BcoDI	GTCTC	2 cut(s)	232, 495
BfaI	CTAG	2 cut(s)	72, 447
BfmI	CTRYAG	1 cut(s)	338
BisI	GCNGC	2 cut(s)	341, 398
BlsI	GCNGC	2 cut(s)	342, 399
Bme1390I	CCNGG	3 cut(s)	135, 506, 535
Bme18I	GGWCC	2 cut(s)	152, 537
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	152, 537
BmiI	GGNNCC	2 cut(s)	365, 538
BmrFI	CCNGG	3 cut(s)	135, 506, 535
BmsI	GCATC	1 cut(s)	660
BpiI	GAAGAC	1 cut(s)	567
BpuEI	CTTGAG	2 cut(s)	287, 422
BpuMI	CCSGG	1 cut(s)	535
BsaHI	GRCGYC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	59, 505
BsaWI	WCCGGW	5 cut(s)	149, 154, 169, 551, 632
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 690
Bse118I	RCCGGY	1 cut(s)	154
BseBI	CCWGG	2 cut(s)	135, 506
BseDI	CCNNGG	2 cut(s)	59, 505
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	2 cut(s)	116, 690
BseMII	CTCAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	352, 409
BshFI	GGCC	2 cut(s)	64, 694
BshTI	ACCGGT	1 cut(s)	154
BsiHKAI	GWGCWC	2 cut(s)	333, 382
BsiSI	CCGG	7 cut(s)	65, 150, 155, 170, 534, 552, 633
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	2 cut(s)	116, 690
BsmAI	GTCTC	2 cut(s)	232, 495
BsmFI	GGGAC	1 cut(s)	550
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	64, 694
Bso31I	GGTCTC	1 cut(s)	495
Bsp1286I	GDGCHC	2 cut(s)	333, 382
Bsp143I	GATC	4 cut(s)	106, 183, 288, 513
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	2 cut(s)	56, 373
BspANI	GGCC	2 cut(s)	64, 694
BspCNI	CTCAG	1 cut(s)	477
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	365, 538
BspMAI	CTGCAG	1 cut(s)	342
BspPI	GGATC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	59, 505
BssMI	GATC	4 cut(s)	106, 183, 288, 513
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	135, 506
Bst4CI	ACNGT	3 cut(s)	384, 568, 653
Bst6I	CTCTTC	2 cut(s)	230, 279
BstACI	GRCGYC	1 cut(s)	438
BstC8I	GCNNGC	1 cut(s)	692
BstDEI	CTNAG	3 cut(s)	422, 485, 497
BstDSI	CCRYGG	1 cut(s)	59
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	595
BstKTI	GATC	4 cut(s)	109, 186, 291, 516
BstMAI	GTCTC	2 cut(s)	232, 495
BstMBI	GATC	4 cut(s)	106, 183, 288, 513
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 403
BstNI	CCWGG	2 cut(s)	135, 506
BstSCI	CCNGG	3 cut(s)	133, 504, 533
BstSFI	CTRYAG	1 cut(s)	338
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	352, 409
BstV2I	GAAGAC	1 cut(s)	567
BstXI	CCANNNNNNTGG	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	64, 694
BtgI	CCRYGG	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	595
Cac8I	GCNNGC	1 cut(s)	692
CciI	TCATGA	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	152, 537
CpoI	CGGWCCG	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	167, 196, 412, 433
CspAI	ACCGGT	1 cut(s)	154
CspI	CGGWCCG	1 cut(s)	152
CviAII	CATG	3 cut(s)	49, 60, 187
CviQI	GTAC	4 cut(s)	167, 196, 412, 433
DdeI	CTNAG	3 cut(s)	422, 485, 497
DpnI	GATC	4 cut(s)	108, 185, 290, 515
DpnII	GATC	4 cut(s)	106, 183, 288, 513
EaeI	YGGCCR	2 cut(s)	62, 692
Eam1104I	CTCTTC	2 cut(s)	230, 279
EarI	CTCTTC	2 cut(s)	230, 279
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	495
Eco47I	GGWCC	2 cut(s)	152, 537
Eco53kI	GAGCTC	1 cut(s)	331
EcoICRI	GAGCTC	1 cut(s)	331
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoRII	CCWGG	2 cut(s)	133, 504
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	3 cut(s)	52, 63, 190
FaiI	YATR	7 cut(s)	50, 61, 127, 129, 188, 614, 700
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	3 cut(s)	48, 59, 186
FbaI	TGATCA	1 cut(s)	513
Fnu4HI	GCNGC	2 cut(s)	341, 398
FokI	GGATG	1 cut(s)	582
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	2 cut(s)	341, 398
FspBI	CTAG	2 cut(s)	72, 447
GluI	GCNGC	2 cut(s)	341, 398
HaeIII	GGCC	2 cut(s)	64, 694
HapII	CCGG	7 cut(s)	65, 150, 155, 170, 534, 552, 633
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	52, 63, 190
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	5 cut(s)	68, 173, 299, 416, 640
HpaII	CCGG	7 cut(s)	65, 150, 155, 170, 534, 552, 633
HphI	GGTGA	4 cut(s)	325, 487, 566, 622
Hpy166II	GTNNAC	4 cut(s)	12, 251, 380, 649
Hpy188I	TCNGA	5 cut(s)	178, 207, 304, 351, 669
Hpy188III	TCNNGA	4 cut(s)	187, 281, 324, 517
Hpy8I	GTNNAC	4 cut(s)	12, 251, 380, 649
Hpy99I	CGWCG	2 cut(s)	440, 443
HpyAV	CCTTC	2 cut(s)	304, 382
HpyCH4III	ACNGT	3 cut(s)	384, 568, 653
HpyCH4IV	ACGT	4 cut(s)	24, 33, 346, 438
HpyCH4V	TGCA	2 cut(s)	340, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 403
HpyF3I	CTNAG	3 cut(s)	422, 485, 497
HpySE526I	ACGT	4 cut(s)	24, 33, 346, 438
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	52, 63, 190
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	4 cut(s)	106, 183, 288, 513
LmnI	GCTCC	1 cut(s)	93
Lsp1109I	GCAGC	2 cut(s)	352, 409
LweI	GCATC	1 cut(s)	660
MaeI	CTAG	2 cut(s)	72, 447
MaeII	ACGT	4 cut(s)	24, 33, 346, 438
MaeIII	GTNAC	1 cut(s)	462
MalI	GATC	4 cut(s)	108, 185, 290, 515
MboI	GATC	4 cut(s)	106, 183, 288, 513
MboII	GAAGA	4 cut(s)	247, 296, 490, 572
MhlI	GDGCHC	2 cut(s)	333, 382
MluCI	AATT	3 cut(s)	121, 254, 293
MlyI	GAGTC	2 cut(s)	77, 410
MnlI	CCTC	4 cut(s)	466, 550, 629, 694
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	58
MspI	CCGG	7 cut(s)	65, 150, 155, 170, 534, 552, 633
MspR9I	CCNGG	3 cut(s)	135, 506, 535
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	2 cut(s)	135, 506
MwoI	GCNNNNNNNGC	2 cut(s)	337, 403
NciI	CCSGG	1 cut(s)	535
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	4 cut(s)	106, 183, 288, 513
NlaIII	CATG	3 cut(s)	52, 63, 190
NlaIV	GGNNCC	2 cut(s)	365, 538
PagI	TCATGA	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	3 cut(s)	173, 299, 640
PinAI	ACCGGT	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	342, 399
PleI	GAGTC	2 cut(s)	76, 410
PpsI	GAGTC	2 cut(s)	76, 410
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	2 cut(s)	133, 504
PspGI	CCWGG	2 cut(s)	133, 504
PspN4I	GGNNCC	2 cut(s)	365, 538
PspPI	GGNCC	2 cut(s)	152, 537
PstI	CTGCAG	1 cut(s)	342
RsaI	GTAC	4 cut(s)	168, 197, 413, 434
RsaNI	GTAC	4 cut(s)	167, 196, 412, 433
RseI	CAYNNNNRTG	1 cut(s)	58
Rsr2I	CGGWCCG	1 cut(s)	152
RsrII	CGGWCCG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	341, 398
Sau3AI	GATC	4 cut(s)	106, 183, 288, 513
Sau96I	GGNCC	2 cut(s)	152, 537
SchI	GAGTC	2 cut(s)	77, 410
ScrFI	CCNGG	3 cut(s)	135, 506, 535
SduI	GDGCHC	2 cut(s)	333, 382
SfaNI	GCATC	1 cut(s)	660
SfcI	CTRYAG	1 cut(s)	338
SinI	GGWCC	2 cut(s)	152, 537
SmiMI	CAYNNNNRTG	1 cut(s)	58
SmlI	CTYRAG	2 cut(s)	266, 401
SmoI	CTYRAG	2 cut(s)	266, 401
Sse9I	AATT	3 cut(s)	121, 254, 293
SsiI	CCGC	2 cut(s)	56, 373
SspMI	CTAG	2 cut(s)	72, 447
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	3 cut(s)	133, 504, 533
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	3 cut(s)	384, 568, 653
TaiI	ACGT	4 cut(s)	27, 36, 349, 441
TaqI	TCGA	1 cut(s)	323
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	3 cut(s)	121, 254, 293
TfiI	GAWTC	3 cut(s)	173, 299, 640
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseI	GCWGC	2 cut(s)	340, 397
TspDTI	ATGAA	5 cut(s)	37, 114, 203, 567, 629
TspGWI	ACGGA	1 cut(s)	620
VneI	GTGCAC	1 cut(s)	378
VpaK11BI	GGWCC	2 cut(s)	152, 537
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	121
XspI	CTAG	2 cut(s)	72, 447
ZraI	GACGTC	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.