Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010394

Physical Location & Seq

Genomic Coordinates Forward (+)

11076456 .. 11077770

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g09290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGATTGGAAAACCAGTTTGAGACACCTTGTTTCTCGACCAGAACCTTCCTTTGGCTTCCTTAACAACTATAACTGCTATGACCACTATTCTCCTGCTAGGTCTTACTTAAACATATATCTATATTATATACAATTACATACCCAATGCATTTTTAGCACTCGTTTTAGTTGTCAAACTTCATATAAGACTACAAATATATTTGATTTGTTGGGTAATTTTAATTTATTTTCAGGAATGGAGATGAAGCATCAAGCAATGATATCTGAGACATCATCGCAAGGAGGCTTGGTTCCTGGATTAATGGACAGAAATAATCATCAGAGCGGTTATGGGTGCTCTAGTCATGACAAAAAGAAGAGACTGACGAGCGATCAGTTGGAGTCACTGGAGAGGAGCTTTGAGGAGGAGATTAAGCTGGATCCTGATAGGAAGATGAAGCTTTCAAGAGAGCTCGGCTTGCAACCTAGGAAGATTGCAGTTTGGTTCCAAAACCGAAGAGCCAGGTGGAAGGCTAAGCAGCTTGAGCGCTTGTATGACGCTCTCAAACAAGAGTATGATGTTGTCTCCAAAGAGAAGCAAAAGCTTCAAGAAGAGGTCATGAAGCTGAAGACAATCCTAAGAGATGAAGTTGCTAGGAAGCAAGTTTCCACCCGCTACACTGAAATCTCTGGTGAAGAGACGGTAGAAAGCACGTCGGTTGCTATTCGAAGCGCTAACAAGGCAGGAGGGAAAAACCAACATCAGATTGCAGAATGCAACTATCTCTACATTAATGTTGAGGAATATAACCCAGTATCACCACCTTTCTGGGGAAATCTGCCTTCTTATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009965 GO:0010016 GO:0010022 GO:0010073 GO:0010432 GO:0010433 GO:0010434 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043565 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

279

Amino Acids

32.47

Weight (kDa)

8.91

Isoelectric Point (pI)

61.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03790 AT5G03790
fragaria_vesca	FvH4_6g17450 FvH4_6g17450 FvH4_6g17450
malus_domestica	MD12G1100600.v1.1 MD14G1094700.v1.1
prunus_persica	Prupe.7G121100_v2.0.a1
pyrus_communis	pycom12g09900 pycom14g09290
rosa_chinensis	RchiOBHm_Chr3g0471691
rosa_laevigata	RLG00000024142
rosa_multiflora	Rmu_sc0005631.1_g000017
rosa_roxburghii	Rroxscaffold_6G00409650
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh3AG170200 Rh3BG195900 Rh3CG186600 Rh3CG195100 Rh3DG179000
rosa_wichuraiana	Rw0G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	327
AciI	CCGC	2 cut(s)	327, 655
AclWI	GGATC	2 cut(s)	416, 429
AcuI	CTGAAG	1 cut(s)	629
AfeI	AGCGCT	2 cut(s)	530, 715
AfiI	CCNNNNNNNGG	2 cut(s)	53, 812
AgsI	TTSAA	2 cut(s)	447, 590
AjiI	CACGTC	1 cut(s)	696
AjnI	CCWGG	2 cut(s)	295, 503
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AloI	GAACNNNNNNTCC	2 cut(s)	276, 308
AluBI	AGCT	7 cut(s)	399, 418, 442, 454, 523, 586, 607
AluI	AGCT	7 cut(s)	399, 418, 442, 454, 523, 586, 607
Alw21I	GWGCWC	2 cut(s)	341, 456
Alw26I	GTCTC	5 cut(s)	16, 263, 355, 571, 674
AlwI	GGATC	2 cut(s)	416, 429
Aor51HI	AGCGCT	2 cut(s)	530, 715
ApeKI	GCWGC	1 cut(s)	520
AseI	ATTAAT	2 cut(s)	302, 774
AspA2I	CCTAGG	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	531, 716
AsuHPI	GGTGA	2 cut(s)	686, 792
AsuII	TTCGAA	1 cut(s)	709
AvrII	CCTAGG	1 cut(s)	467
BamHI	GGATCC	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	617
Bbv12I	GWGCWC	2 cut(s)	341, 456
BbvI	GCAGC	1 cut(s)	532
BciT130I	CCWGG	2 cut(s)	297, 505
BcoDI	GTCTC	5 cut(s)	16, 263, 355, 571, 674
BfaI	CTAG	4 cut(s)	99, 342, 468, 636
BfoI	RGCGCY	2 cut(s)	532, 717
BisI	GCNGC	1 cut(s)	521
BlnI	CCTAGG	1 cut(s)	467
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	522
Bme1390I	CCNGG	2 cut(s)	297, 505
BmgBI	CACGTC	1 cut(s)	696
BmiI	GGNNCC	3 cut(s)	294, 423, 488
BmrFI	CCNGG	2 cut(s)	297, 505
BmrI	ACTGGG	1 cut(s)	788
BmsI	GCATC	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	788
BpiI	GAAGAC	1 cut(s)	617
BpmI	CTGGAG	1 cut(s)	410
Bpu1102I	GCTNAGC	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	709
BpuEI	CTTGAG	1 cut(s)	545
BsaJI	CCNNGG	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 812
Bse1I	ACTGG	3 cut(s)	15, 393, 794
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	297, 505
BseDI	CCNNGG	1 cut(s)	467
BseLI	CCNNNNNNNGG	2 cut(s)	53, 812
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	3 cut(s)	15, 393, 794
BseRI	GAGGAG	3 cut(s)	409, 419, 422
BseXI	GCAGC	1 cut(s)	532
BsiHKAI	GWGCWC	2 cut(s)	341, 456
BslI	CCNNNNNNNGG	2 cut(s)	53, 812
BsmAI	GTCTC	5 cut(s)	16, 263, 355, 571, 674
BsmBI	CGTCTC	1 cut(s)	674
BsmI	GAATGC	1 cut(s)	761
Bsp119I	TTCGAA	1 cut(s)	709
Bsp1286I	GDGCHC	2 cut(s)	341, 456
Bsp143I	GATC	2 cut(s)	373, 421
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	2 cut(s)	327, 655
BspCNI	CTCAG	1 cut(s)	259
BspHI	TCATGA	2 cut(s)	346, 600
BspLI	GGNNCC	3 cut(s)	294, 423, 488
BspPI	GGATC	2 cut(s)	416, 429
BspQI	GCTCTTC	1 cut(s)	493
BspT104I	TTCGAA	1 cut(s)	709
BsrBI	CCGCTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	3 cut(s)	15, 393, 794
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	2 cut(s)	373, 421
BssT1I	CCWWGG	1 cut(s)	467
Bst2UI	CCWGG	2 cut(s)	297, 505
Bst4CI	ACNGT	1 cut(s)	685
Bst6I	CTCTTC	4 cut(s)	353, 493, 588, 672
BstBI	TTCGAA	1 cut(s)	709
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	3 cut(s)	267, 516, 620
BstH2I	RGCGCY	2 cut(s)	532, 717
BstHHI	GCGC	2 cut(s)	531, 716
BstKTI	GATC	2 cut(s)	376, 424
BstMAI	GTCTC	5 cut(s)	16, 263, 355, 571, 674
BstMBI	GATC	2 cut(s)	373, 421
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 460, 526, 722
BstNI	CCWGG	2 cut(s)	297, 505
BstSCI	CCNGG	2 cut(s)	295, 503
BstV1I	GCAGC	1 cut(s)	532
BstV2I	GAAGAC	1 cut(s)	617
BstX2I	RGATCY	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	810
BstYI	RGATCY	1 cut(s)	421
BtgZI	GCGATG	1 cut(s)	261
BtrI	CACGTC	1 cut(s)	696
BtsIMutI	CAGTG	2 cut(s)	386, 660
Cac8I	GCNNGC	1 cut(s)	461
CciI	TCATGA	2 cut(s)	346, 600
CfoI	GCGC	2 cut(s)	531, 716
CseI	GACGC	1 cut(s)	548
CviAII	CATG	2 cut(s)	347, 601
DdeI	CTNAG	3 cut(s)	267, 516, 620
DpnI	GATC	2 cut(s)	375, 423
DpnII	GATC	2 cut(s)	373, 421
Eam1104I	CTCTTC	4 cut(s)	353, 493, 588, 672
EarI	CTCTTC	4 cut(s)	353, 493, 588, 672
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	264
Eco47III	AGCGCT	2 cut(s)	530, 715
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	629
EcoICRI	GAGCTC	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	295, 503
EcoRV	GATATC	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	467
Esp3I	CGTCTC	1 cut(s)	674
FaeI	CATG	2 cut(s)	350, 604
FatI	CATG	2 cut(s)	346, 600
FauI	CCCGC	1 cut(s)	662
Fnu4HI	GCNGC	1 cut(s)	521
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	1 cut(s)	521
FspBI	CTAG	4 cut(s)	99, 342, 468, 636
GlaI	GCGC	2 cut(s)	530, 715
GluI	GCNGC	1 cut(s)	521
GsuI	CTGGAG	1 cut(s)	410
HaeII	RGCGCY	2 cut(s)	532, 717
HgaI	GACGC	1 cut(s)	548
HhaI	GCGC	2 cut(s)	531, 716
Hin1II	CATG	2 cut(s)	350, 604
Hin6I	GCGC	2 cut(s)	529, 714
HinP1I	GCGC	2 cut(s)	529, 714
HindIII	AAGCTT	2 cut(s)	440, 584
HinfI	GANTC	1 cut(s)	383
HphI	GGTGA	2 cut(s)	686, 792
Hpy188I	TCNGA	3 cut(s)	268, 324, 747
Hpy188III	TCNNGA	7 cut(s)	36, 234, 347, 425, 447, 590, 601
Hpy99I	CGWCG	1 cut(s)	700
HpyAV	CCTTC	3 cut(s)	57, 505, 834
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4IV	ACGT	1 cut(s)	695
HpyCH4V	TGCA	5 cut(s)	150, 463, 479, 752, 759
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 460, 526, 722
HpyF3I	CTNAG	3 cut(s)	267, 516, 620
HpySE526I	ACGT	1 cut(s)	695
Hsp92II	CATG	2 cut(s)	350, 604
HspAI	GCGC	2 cut(s)	529, 714
Kzo9I	GATC	2 cut(s)	373, 421
LguI	GCTCTTC	1 cut(s)	493
LmnI	GCTCC	1 cut(s)	396
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	4 cut(s)	99, 342, 468, 636
MaeII	ACGT	1 cut(s)	695
MaeIII	GTNAC	1 cut(s)	384
MalI	GATC	2 cut(s)	375, 423
MbiI	CCGCTC	1 cut(s)	327
MboI	GATC	2 cut(s)	373, 421
MboII	GAAGA	7 cut(s)	370, 445, 484, 510, 605, 622, 689
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	341, 456
MluCI	AATT	3 cut(s)	134, 217, 223
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	7 cut(s)	278, 387, 397, 400, 589, 722, 775
Mph1103I	ATGCAT	1 cut(s)	152
MseI	TTAA	6 cut(s)	63, 110, 222, 302, 414, 774
MspR9I	CCNGG	2 cut(s)	297, 505
Mva1269I	GAATGC	1 cut(s)	761
MvaI	CCWGG	2 cut(s)	297, 505
MwoI	GCNNNNNNNGC	4 cut(s)	156, 460, 526, 722
NdeII	GATC	2 cut(s)	373, 421
NlaIII	CATG	2 cut(s)	350, 604
NlaIV	GGNNCC	3 cut(s)	294, 423, 488
NmeAIII	GCCGAG	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	384
NsiI	ATGCAT	1 cut(s)	152
NspV	TTCGAA	1 cut(s)	709
PagI	TCATGA	2 cut(s)	346, 600
PciSI	GCTCTTC	1 cut(s)	493
PctI	GAATGC	1 cut(s)	761
PfoI	TCCNGGA	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	522
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PshBI	ATTAAT	2 cut(s)	302, 774
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	295, 503
PspGI	CCWGG	2 cut(s)	295, 503
PspN4I	GGNNCC	3 cut(s)	294, 423, 488
PsuI	RGATCY	1 cut(s)	421
SacI	GAGCTC	1 cut(s)	456
SapI	GCTCTTC	1 cut(s)	493
SaqAI	TTAA	6 cut(s)	63, 110, 222, 302, 414, 774
SatI	GCNGC	1 cut(s)	521
Sau3AI	GATC	2 cut(s)	373, 421
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	2 cut(s)	297, 505
SduI	GDGCHC	2 cut(s)	341, 456
SfaNI	GCATC	1 cut(s)	259
SfuI	TTCGAA	1 cut(s)	709
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	3 cut(s)	134, 217, 223
SsiI	CCGC	2 cut(s)	327, 655
SspMI	CTAG	4 cut(s)	99, 342, 468, 636
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	295, 503
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	1 cut(s)	685
TaiI	ACGT	1 cut(s)	698
TaqI	TCGA	2 cut(s)	37, 709
TasI	AATT	3 cut(s)	134, 217, 223
Tru1I	TTAA	6 cut(s)	63, 110, 222, 302, 414, 774
Tru9I	TTAA	6 cut(s)	63, 110, 222, 302, 414, 774
TscAI	CASTG	2 cut(s)	393, 667
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	1 cut(s)	520
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	5 cut(s)	171, 260, 452, 617, 642
TspRI	CASTG	2 cut(s)	393, 667
VspI	ATTAAT	2 cut(s)	302, 774
XmaJI	CCTAGG	1 cut(s)	467
XspI	CTAG	4 cut(s)	99, 342, 468, 636
Zsp2I	ATGCAT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.