Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010394

Physical Location & Seq

Genomic Coordinates Forward (+)

15668459 .. 15669906

Gene Structure 1448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1100600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATTGGAATACCAATTTGAGACACCATGTTTCTCGACCAGAACCTTCCTTTGGCTTCCTCTACAACTATAACTGCTATGACCACCATCCTCCTGGAATGGAGATGAAGCATCAAGCAATGATATCTGAGACATCATCGCAAGGCGGCTTGGTTCCTGGAATGATGGACAGAAATAATCATCAGAGCAGTTATGGGTGCTCTAGTCAAGACAAAAAGAAGAGACTGACAAGCGATCAGTTAGAGTCACTGGAGAGGAGCTTTCTGGAGGAGATTAAGTTGGACCCTGACAGGAAGATGAAGCTTTCAAGGGAGCTCGGCCTGCAGCCTAGGCAGATTGCAGTTTGGTTCCAAAACCGAAGAGCCAGGTGGAAGGCTAAGCAGCTTGAGCACTTGTATGATGCTCTTAAACAAGAGTATGATGTTGTCTCCAAAGAGAAGCATAAGCTCCAAGAAGAGGTCATGAAGCTGAAGACAATCCTAAGAGATGAAGTTGCTAGGAAGCAAGTTTCCACCGGCTACACTGAAATCTCTGGTGAAGAGACAGTAGAAAGCACGTCGGTTTCTATTCGAAGCGCTAACAAGGCAAGAGGGACAAACCAACATAAGATTGCAGAGTACAATTATCTCTACAATGTTGAGGAATATAACCCAGTGTCACCACCTTTCTGGGGAAATCTGCCTTCTTATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009965 GO:0010016 GO:0010022 GO:0010073 GO:0010432 GO:0010433 GO:0010434 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043565 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

232

Amino Acids

27.0

Weight (kDa)

8.37

Isoelectric Point (pI)

61.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	72 - 125	2.4e-17	Homeodomain
HALZ	PF02183	127 - 161	7.3e-08	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03790 AT5G03790
fragaria_vesca	FvH4_6g17450 FvH4_6g17450 FvH4_6g17450
malus_domestica	MD12G1100600.v1.1 MD14G1094700.v1.1
prunus_persica	Prupe.7G121100_v2.0.a1
pyrus_communis	pycom12g09900 pycom14g09290
rosa_chinensis	RchiOBHm_Chr3g0471691
rosa_laevigata	RLG00000024142
rosa_multiflora	Rmu_sc0005631.1_g000017
rosa_roxburghii	Rroxscaffold_6G00409650
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh3AG170200 Rh3BG195900 Rh3CG186600 Rh3CG195100 Rh3DG179000
rosa_wichuraiana	Rw0G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	491
AfaI	GTAC	1 cut(s)	620
AfeI	AGCGCT	1 cut(s)	577
AfiI	CCNNNNNNNGG	3 cut(s)	53, 457, 671
AgsI	TTSAA	1 cut(s)	309
AjiI	CACGTC	1 cut(s)	558
AjnI	CCWGG	3 cut(s)	94, 157, 365
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AluBI	AGCT	6 cut(s)	261, 304, 316, 385, 448, 469
AluI	AGCT	6 cut(s)	261, 304, 316, 385, 448, 469
Alw21I	GWGCWC	3 cut(s)	203, 318, 393
Alw26I	GTCTC	5 cut(s)	16, 125, 217, 433, 536
Aor51HI	AGCGCT	1 cut(s)	577
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	2 cut(s)	325, 382
AspA2I	CCTAGG	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	578
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	548, 651
AsuII	TTCGAA	1 cut(s)	571
AvaII	GGWCC	1 cut(s)	283
AvrII	CCTAGG	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	479
Bbv12I	GWGCWC	3 cut(s)	203, 318, 393
BbvI	GCAGC	2 cut(s)	337, 394
BccI	CCATC	2 cut(s)	96, 160
BciT130I	CCWGG	3 cut(s)	96, 159, 367
BcoDI	GTCTC	5 cut(s)	16, 125, 217, 433, 536
BfaI	CTAG	3 cut(s)	204, 330, 498
BfmI	CTRYAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	579
BisI	GCNGC	3 cut(s)	148, 326, 383
BlnI	CCTAGG	1 cut(s)	329
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	3 cut(s)	149, 327, 384
Bme1390I	CCNGG	3 cut(s)	96, 159, 367
Bme18I	GGWCC	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	558
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	3 cut(s)	156, 285, 350
BmrFI	CCNGG	3 cut(s)	96, 159, 367
BmrI	ACTGGG	1 cut(s)	647
BmsI	GCATC	2 cut(s)	121, 391
BmuI	ACTGGG	1 cut(s)	647
BpiI	GAAGAC	1 cut(s)	479
BpmI	CTGGAG	2 cut(s)	272, 287
Bpu1102I	GCTNAGC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	571
BpuEI	CTTGAG	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	329
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 457, 671
Bse118I	RCCGGY	1 cut(s)	515
Bse1I	ACTGG	2 cut(s)	255, 653
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	3 cut(s)	96, 159, 367
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	3 cut(s)	53, 457, 671
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	255, 653
BseRI	GAGGAG	2 cut(s)	271, 284
BseXI	GCAGC	2 cut(s)	337, 394
BshFI	GGCC	1 cut(s)	321
BsiHKAI	GWGCWC	3 cut(s)	203, 318, 393
BsiSI	CCGG	1 cut(s)	516
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	3 cut(s)	53, 457, 671
BsmAI	GTCTC	5 cut(s)	16, 125, 217, 433, 536
BsmFI	GGGAC	1 cut(s)	607
BsnI	GGCC	1 cut(s)	321
Bsp119I	TTCGAA	1 cut(s)	571
Bsp1286I	GDGCHC	3 cut(s)	203, 318, 393
Bsp143I	GATC	1 cut(s)	235
Bsp1720I	GCTNAGC	1 cut(s)	378
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	3 cut(s)	156, 285, 350
BspMAI	CTGCAG	1 cut(s)	327
BspQI	GCTCTTC	1 cut(s)	355
BspT104I	TTCGAA	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	255, 653
BssAI	RCCGGY	1 cut(s)	515
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	329
Bst2UI	CCWGG	3 cut(s)	96, 159, 367
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	4 cut(s)	215, 355, 450, 534
BstBI	TTCGAA	1 cut(s)	571
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	3 cut(s)	129, 378, 482
BstF5I	GGATG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	579
BstHHI	GCGC	1 cut(s)	578
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	5 cut(s)	16, 125, 217, 433, 536
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	322, 331, 388, 584
BstNI	CCWGG	3 cut(s)	96, 159, 367
BstSCI	CCNGG	3 cut(s)	94, 157, 365
BstSFI	CTRYAG	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	337, 394
BstV2I	GAAGAC	1 cut(s)	479
BstXI	CCANNNNNNTGG	2 cut(s)	95, 669
BsuRI	GGCC	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	123
BtrI	CACGTC	1 cut(s)	558
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	3 cut(s)	248, 522, 660
Cac8I	GCNNGC	1 cut(s)	323
CciI	TCATGA	1 cut(s)	462
CfoI	GCGC	1 cut(s)	578
Cfr10I	RCCGGY	1 cut(s)	515
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	2 cut(s)	29, 463
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	3 cut(s)	129, 378, 482
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eam1104I	CTCTTC	4 cut(s)	215, 355, 450, 534
EarI	CTCTTC	4 cut(s)	215, 355, 450, 534
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	577
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	316
EcoRII	CCWGG	3 cut(s)	94, 157, 365
EcoRV	GATATC	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	2 cut(s)	32, 466
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	2 cut(s)	28, 462
Fnu4HI	GCNGC	3 cut(s)	148, 326, 383
FokI	GGATG	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	3 cut(s)	148, 326, 383
FspBI	CTAG	3 cut(s)	204, 330, 498
GlaI	GCGC	1 cut(s)	577
GluI	GCNGC	3 cut(s)	148, 326, 383
GsuI	CTGGAG	2 cut(s)	272, 287
HaeII	RGCGCY	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	1 cut(s)	516
HhaI	GCGC	1 cut(s)	578
Hin1II	CATG	2 cut(s)	32, 466
Hin6I	GCGC	1 cut(s)	576
HinP1I	GCGC	1 cut(s)	576
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	2 cut(s)	548, 651
Hpy188I	TCNGA	2 cut(s)	130, 186
Hpy188III	TCNNGA	4 cut(s)	36, 209, 266, 463
Hpy99I	CGWCG	1 cut(s)	562
HpyAV	CCTTC	3 cut(s)	57, 367, 693
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	3 cut(s)	325, 341, 614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	322, 331, 388, 584
HpyF3I	CTNAG	3 cut(s)	129, 378, 482
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	2 cut(s)	32, 466
HspAI	GCGC	1 cut(s)	576
Kzo9I	GATC	1 cut(s)	235
LguI	GCTCTTC	1 cut(s)	355
LmnI	GCTCC	3 cut(s)	258, 313, 453
Lsp1109I	GCAGC	2 cut(s)	337, 394
LweI	GCATC	2 cut(s)	121, 391
MaeI	CTAG	3 cut(s)	204, 330, 498
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	2 cut(s)	246, 657
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	6 cut(s)	232, 307, 372, 467, 484, 551
MhlI	GDGCHC	3 cut(s)	203, 318, 393
MluCI	AATT	2 cut(s)	16, 622
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	7 cut(s)	71, 102, 249, 262, 451, 584, 634
MseI	TTAA	2 cut(s)	276, 408
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	3 cut(s)	96, 159, 367
MvaI	CCWGG	3 cut(s)	96, 159, 367
MwoI	GCNNNNNNNGC	4 cut(s)	322, 331, 388, 584
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	2 cut(s)	32, 466
NlaIV	GGNNCC	3 cut(s)	156, 285, 350
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	2 cut(s)	246, 657
NspV	TTCGAA	1 cut(s)	571
PagI	TCATGA	1 cut(s)	462
PciSI	GCTCTTC	1 cut(s)	355
PfoI	TCCNGGA	2 cut(s)	94, 157
PkrI	GCNGC	3 cut(s)	149, 327, 384
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	3 cut(s)	94, 157, 365
PspGI	CCWGG	3 cut(s)	94, 157, 365
PspN4I	GGNNCC	3 cut(s)	156, 285, 350
PspPI	GGNCC	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	327
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
RseI	CAYNNNNRTG	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	355
SaqAI	TTAA	2 cut(s)	276, 408
SatI	GCNGC	3 cut(s)	148, 326, 383
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	3 cut(s)	96, 159, 367
SduI	GDGCHC	3 cut(s)	203, 318, 393
SfaNI	GCATC	2 cut(s)	121, 391
SfcI	CTRYAG	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	571
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	16, 622
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	3 cut(s)	204, 330, 498
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	3 cut(s)	94, 157, 365
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	2 cut(s)	37, 571
TasI	AATT	2 cut(s)	16, 622
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	1 cut(s)	150
Tru1I	TTAA	2 cut(s)	276, 408
Tru9I	TTAA	2 cut(s)	276, 408
TscAI	CASTG	3 cut(s)	255, 529, 660
TseFI	GTSAC	2 cut(s)	246, 657
TseI	GCWGC	2 cut(s)	325, 382
Tsp45I	GTSAC	2 cut(s)	246, 657
TspDTI	ATGAA	4 cut(s)	122, 314, 479, 504
TspRI	CASTG	3 cut(s)	255, 529, 660
VpaK11BI	GGWCC	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XmaJI	CCTAGG	1 cut(s)	329
XspI	CTAG	3 cut(s)	204, 330, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.