Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010394

Physical Location & Seq

Genomic Coordinates Reverse (-)

11377987 .. 11380263

Gene Structure 2277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17450.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAAGCATCATCAAGCCATGTTCGAGACACCACAAGGATCAGGTCCTTCTTCCATGGAGAGGAGCATGATGAGTTACGGCTGCAGCAGTCAAGAGAAGAAGAAGCGATTGTCGACAGATCAGTTAGAGTCACTGGAGAGGAGTTTTCAGGAAGAGATAAAGCTGGACCCTGATAGGAAGATGAAGCTGTCGAGAGATCTCGGCCTTCAGCCTCGACAAATCGCTGTTTGGTTCCAAAACCGACGAGCAAGGTGGAAGGCCAAGCAGCTCGAACGCTTGTACGATGCTCTTAAACAAGAGTACGACGCCGTCTCTAAAGAAAAGCAAAAGCTTCAAGATGAGGTCATGAAACTGAAGACTGTTCTGAGAGAAGTGGCTAGGAAGCAGGTTTCTCCGGGCTACACTGAAATCTCCGGCGAAGAGACGGTGGAAAGCACTTCCGTGGGTGCCATTCGAAGCTCGAACAAGGCAGGAGGGGTGAGCCAACATCAGATTGCAGAGGGCAACTATATTTTCAACGTTGAGGAGTATAACCCTGTGTCACCACCTTACTGGGGTGGCCTGCCTTCCTATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009965 GO:0010016 GO:0010022 GO:0010073 GO:0010432 GO:0010433 GO:0010434 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043565 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

193

Amino Acids

22.02

Weight (kDa)

9.04

Isoelectric Point (pI)

67.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	78 - 131	4.5e-17	Homeodomain
HALZ	PF02183	133 - 167	2.1e-08	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03790 AT5G03790
fragaria_vesca	FvH4_6g17450 FvH4_6g17450 FvH4_6g17450
malus_domestica	MD12G1100600.v1.1 MD14G1094700.v1.1
prunus_persica	Prupe.7G121100_v2.0.a1
pyrus_communis	pycom12g09900 pycom14g09290
rosa_chinensis	RchiOBHm_Chr3g0471691
rosa_laevigata	RLG00000024142
rosa_multiflora	Rmu_sc0005631.1_g000017
rosa_roxburghii	Rroxscaffold_6G00409650
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh3AG170200 Rh3BG195900 Rh3CG186600 Rh3CG195100 Rh3DG179000
rosa_wichuraiana	Rw0G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	446
AccI	GTMKAC	1 cut(s)	113
AclI	AACGTT	1 cut(s)	519
AclWI	GGATC	1 cut(s)	46
AcuI	CTGAAG	2 cut(s)	191, 374
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	2 cut(s)	281, 302
AfiI	CCNNNNNNNGG	2 cut(s)	60, 554
AgsI	TTSAA	2 cut(s)	335, 517
AleI	CACNNNNGTG	1 cut(s)	440
AluBI	AGCT	5 cut(s)	163, 187, 268, 331, 459
AluI	AGCT	5 cut(s)	163, 187, 268, 331, 459
Alw26I	GTCTC	3 cut(s)	20, 316, 416
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	3 cut(s)	202, 258, 559
ApeKI	GCWGC	3 cut(s)	81, 84, 265
AspS9I	GGNCC	2 cut(s)	44, 166
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	490, 534
AsuII	TTCGAA	1 cut(s)	454
AvaII	GGWCC	2 cut(s)	44, 166
BanI	GGYRCC	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	68, 96, 277
BceAI	ACGGC	2 cut(s)	94, 293
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	3 cut(s)	20, 316, 416
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	82
BfuAI	ACCTGC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	3 cut(s)	82, 85, 266
BlsI	GCNGC	3 cut(s)	83, 86, 267
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	2 cut(s)	44, 166
BmgT120I	GGNCC	2 cut(s)	44, 166
BmiI	GGNNCC	3 cut(s)	168, 233, 448
BmrFI	CCNGG	1 cut(s)	396
BmrI	ACTGGG	1 cut(s)	562
BmsI	GCATC	2 cut(s)	16, 274
BmuI	ACTGGG	1 cut(s)	562
BpiI	GAAGAC	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	454
BpuMI	CCSGG	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	54, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 554
Bse1I	ACTGG	2 cut(s)	138, 557
BseDI	CCNNGG	2 cut(s)	54, 441
BseLI	CCNNNNNNNGG	2 cut(s)	60, 554
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	2 cut(s)	138, 557
BseRI	GAGGAG	3 cut(s)	76, 154, 539
BseXI	GCAGC	3 cut(s)	68, 96, 277
BshFI	GGCC	3 cut(s)	204, 260, 561
BshNI	GGYRCC	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	395, 414
BslI	CCNNNNNNNGG	2 cut(s)	60, 554
BsmAI	GTCTC	3 cut(s)	20, 316, 416
BsmBI	CGTCTC	2 cut(s)	316, 416
BsnI	GGCC	3 cut(s)	204, 260, 561
Bsp119I	TTCGAA	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	38, 118, 196
Bsp19I	CCATGG	1 cut(s)	54
BspANI	GGCC	3 cut(s)	204, 260, 561
BspCNI	CTCAG	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	168, 233, 448
BspMAI	CTGCAG	1 cut(s)	86
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	1 cut(s)	46
BspT104I	TTCGAA	1 cut(s)	454
BspT107I	GGYRCC	1 cut(s)	446
BsrI	ACTGG	2 cut(s)	138, 557
BssECI	CCNNGG	2 cut(s)	54, 441
BssMI	GATC	3 cut(s)	38, 118, 196
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	361, 427
Bst6I	CTCTTC	2 cut(s)	147, 414
BstACI	GRCGYC	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	563
BstDEI	CTNAG	1 cut(s)	365
BstDSI	CCRYGG	2 cut(s)	54, 441
BstKTI	GATC	3 cut(s)	41, 121, 199
BstMAI	GTCTC	3 cut(s)	20, 316, 416
BstMBI	GATC	3 cut(s)	38, 118, 196
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	3 cut(s)	68, 96, 277
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	196
BstXI	CCANNNNNNTGG	1 cut(s)	552
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	204, 260, 561
BtgI	CCRYGG	2 cut(s)	54, 441
BtsIMutI	CAGTG	2 cut(s)	131, 402
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	563
CciI	TCATGA	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	44, 166
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	280, 301
CviAII	CATG	4 cut(s)	19, 55, 67, 346
CviQI	GTAC	2 cut(s)	280, 301
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	3 cut(s)	40, 120, 198
DpnII	GATC	3 cut(s)	38, 118, 196
Eam1104I	CTCTTC	2 cut(s)	147, 414
EarI	CTCTTC	2 cut(s)	147, 414
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	44, 166
Eco57I	CTGAAG	2 cut(s)	191, 374
EcoO109I	RGGNCCY	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	2 cut(s)	316, 416
FaeI	CATG	4 cut(s)	22, 58, 70, 349
FaiI	YATR	6 cut(s)	20, 56, 68, 347, 510, 531
FatI	CATG	4 cut(s)	18, 54, 66, 345
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	3 cut(s)	82, 85, 266
Fsp4HI	GCNGC	3 cut(s)	82, 85, 266
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	3 cut(s)	82, 85, 266
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	204, 260, 561
HapII	CCGG	2 cut(s)	395, 414
HgaI	GACGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	4 cut(s)	22, 58, 70, 349
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	2 cut(s)	395, 414
HphI	GGTGA	2 cut(s)	490, 534
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	2 cut(s)	366, 492
Hpy188III	TCNNGA	6 cut(s)	25, 92, 149, 192, 335, 346
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	2 cut(s)	246, 308
HpyAV	CCTTC	4 cut(s)	57, 215, 250, 576
HpyCH4III	ACNGT	2 cut(s)	361, 427
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	2 cut(s)	84, 497
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	1 cut(s)	519
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	4 cut(s)	22, 58, 70, 349
Kzo9I	GATC	3 cut(s)	38, 118, 196
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	3 cut(s)	68, 96, 277
LweI	GCATC	2 cut(s)	16, 274
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	3 cut(s)	74, 129, 540
MalI	GATC	3 cut(s)	40, 120, 198
MboI	GATC	3 cut(s)	38, 118, 196
MboII	GAAGA	7 cut(s)	42, 109, 112, 164, 190, 367, 431
MflI	RGATCY	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	7 cut(s)	54, 132, 222, 334, 467, 493, 517
MseI	TTAA	2 cut(s)	291, 577
MslI	CAYNNNNRTG	1 cut(s)	440
MspI	CCGG	2 cut(s)	395, 414
MspR9I	CCNGG	1 cut(s)	396
NciI	CCSGG	1 cut(s)	396
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	3 cut(s)	38, 118, 196
NlaIII	CATG	4 cut(s)	22, 58, 70, 349
NlaIV	GGNNCC	3 cut(s)	168, 233, 448
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	2 cut(s)	129, 540
NspV	TTCGAA	1 cut(s)	454
OliI	CACNNNNGTG	1 cut(s)	440
PagI	TCATGA	1 cut(s)	345
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	83, 86, 267
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	44
Psp1406I	AACGTT	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	44
PspN4I	GGNNCC	3 cut(s)	168, 233, 448
PspPI	GGNCC	2 cut(s)	44, 166
PspPPI	RGGWCCY	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	196
PsyI	GACNNNGTC	1 cut(s)	308
RsaI	GTAC	2 cut(s)	281, 302
RsaNI	GTAC	2 cut(s)	280, 301
RseI	CAYNNNNRTG	1 cut(s)	440
SalI	GTCGAC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	291, 577
SatI	GCNGC	3 cut(s)	82, 85, 266
Sau3AI	GATC	3 cut(s)	38, 118, 196
Sau96I	GGNCC	2 cut(s)	44, 166
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	396
SfaNI	GCATC	2 cut(s)	16, 274
SfcI	CTRYAG	1 cut(s)	82
SfuI	TTCGAA	1 cut(s)	454
SinI	GGWCC	2 cut(s)	44, 166
SmiMI	CAYNNNNRTG	1 cut(s)	440
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	361, 427
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	7 cut(s)	24, 113, 191, 214, 270, 454, 461
Tru1I	TTAA	2 cut(s)	291, 577
Tru9I	TTAA	2 cut(s)	291, 577
TscAI	CASTG	2 cut(s)	138, 409
TseFI	GTSAC	2 cut(s)	129, 540
TseI	GCWGC	3 cut(s)	81, 84, 265
Tsp45I	GTSAC	2 cut(s)	129, 540
TspDTI	ATGAA	3 cut(s)	17, 197, 362
TspGWI	ACGGA	1 cut(s)	430
TspRI	CASTG	2 cut(s)	138, 409
Tth111I	GACNNNGTC	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	44, 166
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.