Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00346

Orthogroup ID

OG0010394

Physical Location & Seq

Genomic Coordinates Reverse (-)

129761 .. 131435

Gene Structure 1675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G009010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGATTGGACCAACACCAACTTGAGGCAGCAGCAGCAGCACCACCTTGTTTCTCGACCTGAACCTTCCTTTGGTTTCCTCTACAACTATAATTTCGACCCTTTTCCTCATCCTGGCATGGAGATGAAGCATCATCAAGCCATGTTCTCCGAGACACCACAAGGATCGGTTCCTTCTTCCATGGAGAGGAACAGTCATCATGTCATGAGTTACGGCTGCAACAGTCAAGAGAAGAAGAAGCGATTGTCAACCGATCAGTTAGAGTCACTGGAGAGGAGTTTCCAAGAGGAGATAAAGCTAGACCCTGATAGGAAGATGAAGCTATCGAGAGATCTCGGCCTTCAGCCTCGGCAAATCGCTGTTTGGTTCCAAAACCGACGAGCTAGGTGGAAGGCCAAGCAGCTCGAACGCTTGTACGATGCGCTCAAACAAGATTATGATGCCGTCTCTAAAGAGAAGCAAAAGCTTCAAGACGAGGTCATGAAACTGAAGACTATTCTGAGAGAAGAAGTTGCGAGGAAGCAGGTTTCTCAGGGCTACACTGAAATCTCCGGCGAAGAGACAGTGGAAAGCACTTCGGTGGCTGCCATTCGAAGCTCGAACAAGGCAGGAGGGGTAAGCCAGCATCAGATTGCAGAGGGCAATTATCTTTTCAATGTTGAGGAGTATAACCCTGTATCACCACCTTACTGGGGTGCCCTGCCTTCTTATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009965 GO:0010016 GO:0010022 GO:0010073 GO:0010432 GO:0010433 GO:0010434 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043565 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

238

Amino Acids

27.68

Weight (kDa)

7.83

Isoelectric Point (pI)

63.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	78 - 131	4.5e-17	Homeodomain
HALZ	PF02183	133 - 167	1.1e-08	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03790 AT5G03790
fragaria_vesca	FvH4_6g17450 FvH4_6g17450 FvH4_6g17450
malus_domestica	MD12G1100600.v1.1 MD14G1094700.v1.1
prunus_persica	Prupe.7G121100_v2.0.a1
pyrus_communis	pycom12g09900 pycom14g09290
rosa_chinensis	RchiOBHm_Chr3g0471691
rosa_laevigata	RLG00000024142
rosa_multiflora	Rmu_sc0005631.1_g000017
rosa_roxburghii	Rroxscaffold_6G00409650
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh3AG170200 Rh3BG195900 Rh3CG186600 Rh3CG195100 Rh3DG179000
rosa_wichuraiana	Rw0G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	514
AccB1I	GGYRCC	1 cut(s)	695
AclWI	GGATC	1 cut(s)	172
AcuI	CTGAAG	2 cut(s)	326, 509
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	5 cut(s)	24, 71, 113, 186, 692
AgsI	TTSAA	2 cut(s)	470, 655
AjnI	CCWGG	1 cut(s)	112
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AleI	CACNNNNGTG	1 cut(s)	578
AluBI	AGCT	6 cut(s)	298, 322, 383, 403, 466, 597
AluI	AGCT	6 cut(s)	298, 322, 383, 403, 466, 597
Alw26I	GTCTC	3 cut(s)	146, 451, 554
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	2 cut(s)	337, 393
ApeKI	GCWGC	7 cut(s)	28, 31, 34, 37, 216, 400, 584
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	672
AsuII	TTCGAA	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	700
BanI	GGYRCC	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	497
BbvI	GCAGC	7 cut(s)	40, 43, 46, 49, 203, 412, 571
BceAI	ACGGC	2 cut(s)	229, 428
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	3 cut(s)	146, 451, 554
BfaI	CTAG	2 cut(s)	299, 384
BfuAI	ACCTGC	1 cut(s)	514
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	7 cut(s)	29, 32, 35, 38, 217, 401, 585
BlsI	GCNGC	7 cut(s)	30, 33, 36, 39, 218, 402, 586
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	3 cut(s)	171, 368, 697
BmrFI	CCNGG	1 cut(s)	114
BmrI	ACTGGG	1 cut(s)	700
BmsI	GCATC	4 cut(s)	139, 409, 430, 634
BmuI	ACTGGG	1 cut(s)	700
BpiI	GAAGAC	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	290
Bpu14I	TTCGAA	1 cut(s)	592
BpuEI	CTTGAG	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	180, 347
Bsc4I	CCNNNNNNNGG	5 cut(s)	24, 71, 113, 186, 692
Bse1I	ACTGG	2 cut(s)	273, 695
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	180, 347
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	5 cut(s)	24, 71, 113, 186, 692
BseMII	CTCAG	2 cut(s)	491, 545
BseNI	ACTGG	2 cut(s)	273, 695
BseRI	GAGGAG	3 cut(s)	289, 302, 677
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	7 cut(s)	40, 43, 46, 49, 203, 412, 571
BshFI	GGCC	2 cut(s)	339, 395
BshNI	GGYRCC	1 cut(s)	695
BsiSI	CCGG	1 cut(s)	552
BslI	CCNNNNNNNGG	5 cut(s)	24, 71, 113, 186, 692
BsmAI	GTCTC	3 cut(s)	146, 451, 554
BsmBI	CGTCTC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	339, 395
Bsp119I	TTCGAA	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	164, 253, 331
Bsp19I	CCATGG	1 cut(s)	180
BspANI	GGCC	2 cut(s)	339, 395
BspCNI	CTCAG	2 cut(s)	492, 544
BspHI	TCATGA	2 cut(s)	204, 480
BspLI	GGNNCC	3 cut(s)	171, 368, 697
BspMI	ACCTGC	1 cut(s)	514
BspPI	GGATC	1 cut(s)	172
BspT104I	TTCGAA	1 cut(s)	592
BspT107I	GGYRCC	1 cut(s)	695
BsrI	ACTGG	2 cut(s)	273, 695
BssECI	CCNNGG	2 cut(s)	180, 347
BssMI	GATC	3 cut(s)	164, 253, 331
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	194, 224, 565
Bst6I	CTCTTC	1 cut(s)	552
BstBI	TTCGAA	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	2 cut(s)	500, 531
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	3 cut(s)	167, 256, 334
BstMAI	GTCTC	3 cut(s)	146, 451, 554
BstMBI	GATC	3 cut(s)	164, 253, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 37
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	700
BstV1I	GCAGC	7 cut(s)	40, 43, 46, 49, 203, 412, 571
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	339, 395
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	3 cut(s)	266, 540, 570
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	623
CciI	TCATGA	2 cut(s)	204, 480
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	6 cut(s)	118, 142, 181, 200, 205, 481
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	2 cut(s)	500, 531
DpnI	GATC	3 cut(s)	166, 255, 333
DpnII	GATC	3 cut(s)	164, 253, 331
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	326, 509
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	6 cut(s)	121, 145, 184, 203, 208, 484
FaiI	YATR	9 cut(s)	90, 119, 143, 182, 201, 206, 438, 482, 669
FatI	CATG	6 cut(s)	117, 141, 180, 199, 204, 480
Fnu4HI	GCNGC	7 cut(s)	29, 32, 35, 38, 217, 401, 585
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	7 cut(s)	29, 32, 35, 38, 217, 401, 585
FspBI	CTAG	2 cut(s)	299, 384
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	7 cut(s)	29, 32, 35, 38, 217, 401, 585
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	339, 395
HapII	CCGG	1 cut(s)	552
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	6 cut(s)	121, 145, 184, 203, 208, 484
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	1 cut(s)	672
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	3 cut(s)	151, 501, 630
Hpy188III	TCNNGA	6 cut(s)	54, 205, 227, 327, 470, 481
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	5 cut(s)	75, 183, 350, 385, 714
HpyCH4III	ACNGT	3 cut(s)	194, 224, 565
HpyCH4V	TGCA	2 cut(s)	219, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 37
HpyF3I	CTNAG	2 cut(s)	500, 531
Hsp92II	CATG	6 cut(s)	121, 145, 184, 203, 208, 484
HspAI	GCGC	1 cut(s)	422
Kzo9I	GATC	3 cut(s)	164, 253, 331
Lsp1109I	GCAGC	7 cut(s)	40, 43, 46, 49, 203, 412, 571
LweI	GCATC	4 cut(s)	139, 409, 430, 634
MaeI	CTAG	2 cut(s)	299, 384
MaeIII	GTNAC	2 cut(s)	209, 264
MalI	GATC	3 cut(s)	166, 255, 333
MboI	GATC	3 cut(s)	164, 253, 331
MboII	GAAGA	7 cut(s)	168, 244, 247, 325, 502, 518, 569
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	700
MluCI	AATT	2 cut(s)	91, 643
MlyI	GAGTC	1 cut(s)	272
MslI	CAYNNNNRTG	2 cut(s)	122, 578
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	34, 37
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	164, 253, 331
NlaIII	CATG	6 cut(s)	121, 145, 184, 203, 208, 484
NlaIV	GGNNCC	3 cut(s)	171, 368, 697
NmeAIII	GCCGAG	2 cut(s)	315, 328
NmuCI	GTSAC	1 cut(s)	264
NspV	TTCGAA	1 cut(s)	592
OliI	CACNNNNGTG	1 cut(s)	578
PagI	TCATGA	2 cut(s)	204, 480
PflFI	GACNNNGTC	1 cut(s)	476
PkrI	GCNGC	7 cut(s)	30, 33, 36, 39, 218, 402, 586
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	171, 368, 697
PspPI	GGNCC	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	1 cut(s)	476
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	2 cut(s)	122, 578
SatI	GCNGC	7 cut(s)	29, 32, 35, 38, 217, 401, 585
Sau3AI	GATC	3 cut(s)	164, 253, 331
Sau96I	GGNCC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	4 cut(s)	139, 409, 430, 634
SfuI	TTCGAA	1 cut(s)	592
SinI	GGWCC	1 cut(s)	9
SmiMI	CAYNNNNRTG	2 cut(s)	122, 578
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	2 cut(s)	91, 643
SspMI	CTAG	2 cut(s)	299, 384
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	194, 224, 565
TaqI	TCGA	6 cut(s)	55, 96, 326, 405, 592, 599
TasI	AATT	2 cut(s)	91, 643
TscAI	CASTG	3 cut(s)	273, 547, 570
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	7 cut(s)	28, 31, 34, 37, 216, 400, 584
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	3 cut(s)	140, 332, 497
TspRI	CASTG	3 cut(s)	273, 547, 570
Tth111I	GACNNNGTC	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	9
XspI	CTAG	2 cut(s)	299, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.