Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010394

Physical Location & Seq

Genomic Coordinates Forward (+)

14188267 .. 14189795

Gene Structure 1529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1094700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGATTGGAAAACCAGTTTGAGACACCTTGTTTCTCGACCAGAACCTTCCTCTGGCTTCCTTTACAACTATAACTGCTATGACCACTATTCTCCTGGAATGGAGATGAAGCATCAAGCAATGATATCTGAGACATCATCGAAAGGAGGCTTGGTTCCTGGATTAATGGACAGAAATAATCATCAGAGCGGTTATGGGTGCTCTAGTCAAGACAAAAAGAAGAGACTGACGAGCGATCAGTTGGAGTCACTGGAGAGGAGCTTTGAGGAGGAGATTAAGCTGGATCCTGTTAGGAAGATGAAGCTTTCAAGAGAGCTCGGCTTGCAGCCTAGGCAGATTGCAGTTTGGTTCCAAAACCGAAGAGCTAGGTGGAAGGCTAAGCAGCTTGAGCGCTTGTATGACGCTCTCAAACAAGAGTATGATGTTGTCTCCAAAGAGAAGCAAAAGCTTCAAGAAGAGGTCATGAAGCTGAAGACAATCCTAAGAGATGAAGTTGCTAGGAAGCAAGTTTCCACCCGCTACACTGAAATCTCTGGTGAAGAGACGGTAGAAAGCACGTCGGTTGCTATTCGAAGCGCTAACAAGGCAGGAGGGAAAAACCAACATCAGATTGCAGAATGCAACTATCTCTACATTAATATTGAGGAATATAACCCAGTATCACCACCTTTCTGGGGAAATCTGCCTTCTTATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009965 GO:0010016 GO:0010022 GO:0010073 GO:0010432 GO:0010433 GO:0010434 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043565 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

233

Amino Acids

26.96

Weight (kDa)

8.95

Isoelectric Point (pI)

73.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	72 - 125	2.1e-17	Homeodomain
HALZ	PF02183	127 - 161	3.7e-08	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03790 AT5G03790
fragaria_vesca	FvH4_6g17450 FvH4_6g17450 FvH4_6g17450
malus_domestica	MD12G1100600.v1.1 MD14G1094700.v1.1
prunus_persica	Prupe.7G121100_v2.0.a1
pyrus_communis	pycom12g09900 pycom14g09290
rosa_chinensis	RchiOBHm_Chr3g0471691
rosa_laevigata	RLG00000024142
rosa_multiflora	Rmu_sc0005631.1_g000017
rosa_roxburghii	Rroxscaffold_6G00409650
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh3AG170200 Rh3BG195900 Rh3CG186600 Rh3CG195100 Rh3DG179000
rosa_wichuraiana	Rw0G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	189
AciI	CCGC	2 cut(s)	189, 517
AclWI	GGATC	2 cut(s)	278, 291
AcuI	CTGAAG	1 cut(s)	491
AfeI	AGCGCT	2 cut(s)	392, 577
AfiI	CCNNNNNNNGG	2 cut(s)	53, 674
AgsI	TTSAA	2 cut(s)	309, 452
AjiI	CACGTC	1 cut(s)	558
AjnI	CCWGG	2 cut(s)	94, 157
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AloI	GAACNNNNNNTCC	2 cut(s)	138, 170
AluBI	AGCT	8 cut(s)	261, 280, 304, 316, 365, 385, 448, 469
AluI	AGCT	8 cut(s)	261, 280, 304, 316, 365, 385, 448, 469
Alw21I	GWGCWC	2 cut(s)	203, 318
Alw26I	GTCTC	5 cut(s)	16, 125, 217, 433, 536
AlwI	GGATC	2 cut(s)	278, 291
Aor51HI	AGCGCT	2 cut(s)	392, 577
ApeKI	GCWGC	2 cut(s)	325, 382
AseI	ATTAAT	2 cut(s)	164, 636
AspA2I	CCTAGG	1 cut(s)	329
AspLEI	GCGC	2 cut(s)	393, 578
AsuHPI	GGTGA	2 cut(s)	548, 654
AsuII	TTCGAA	1 cut(s)	571
AvrII	CCTAGG	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	479
Bbv12I	GWGCWC	2 cut(s)	203, 318
BbvI	GCAGC	2 cut(s)	337, 394
BciT130I	CCWGG	2 cut(s)	96, 159
BcoDI	GTCTC	5 cut(s)	16, 125, 217, 433, 536
BfaI	CTAG	4 cut(s)	204, 330, 366, 498
BfoI	RGCGCY	2 cut(s)	394, 579
BisI	GCNGC	2 cut(s)	326, 383
BlnI	CCTAGG	1 cut(s)	329
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	2 cut(s)	327, 384
Bme1390I	CCNGG	2 cut(s)	96, 159
BmgBI	CACGTC	1 cut(s)	558
BmiI	GGNNCC	3 cut(s)	156, 285, 350
BmrFI	CCNGG	2 cut(s)	96, 159
BmrI	ACTGGG	1 cut(s)	650
BmsI	GCATC	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	650
BpiI	GAAGAC	1 cut(s)	479
BpmI	CTGGAG	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	571
BpuEI	CTTGAG	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	329
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 674
Bse1I	ACTGG	3 cut(s)	15, 255, 656
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	96, 159
BseDI	CCNNGG	1 cut(s)	329
BseLI	CCNNNNNNNGG	2 cut(s)	53, 674
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	3 cut(s)	15, 255, 656
BseRI	GAGGAG	3 cut(s)	271, 281, 284
BseXI	GCAGC	2 cut(s)	337, 394
BsiHKAI	GWGCWC	2 cut(s)	203, 318
BslI	CCNNNNNNNGG	2 cut(s)	53, 674
BsmAI	GTCTC	5 cut(s)	16, 125, 217, 433, 536
BsmBI	CGTCTC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	623
Bsp119I	TTCGAA	1 cut(s)	571
Bsp1286I	GDGCHC	2 cut(s)	203, 318
Bsp143I	GATC	2 cut(s)	235, 283
Bsp1720I	GCTNAGC	1 cut(s)	378
BspACI	CCGC	2 cut(s)	189, 517
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	3 cut(s)	156, 285, 350
BspPI	GGATC	2 cut(s)	278, 291
BspQI	GCTCTTC	1 cut(s)	355
BspT104I	TTCGAA	1 cut(s)	571
BsrBI	CCGCTC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	3 cut(s)	15, 255, 656
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	2 cut(s)	235, 283
BssT1I	CCWWGG	1 cut(s)	329
Bst2UI	CCWGG	2 cut(s)	96, 159
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	4 cut(s)	215, 355, 450, 534
BstBI	TTCGAA	1 cut(s)	571
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	3 cut(s)	129, 378, 482
BstH2I	RGCGCY	2 cut(s)	394, 579
BstHHI	GCGC	2 cut(s)	393, 578
BstKTI	GATC	2 cut(s)	238, 286
BstMAI	GTCTC	5 cut(s)	16, 125, 217, 433, 536
BstMBI	GATC	2 cut(s)	235, 283
BstMWI	GCNNNNNNNGC	4 cut(s)	322, 331, 388, 584
BstNI	CCWGG	2 cut(s)	96, 159
BstSCI	CCNGG	2 cut(s)	94, 157
BstV1I	GCAGC	2 cut(s)	337, 394
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	283
BtrI	CACGTC	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	248, 522
Cac8I	GCNNGC	1 cut(s)	323
CciI	TCATGA	1 cut(s)	462
CfoI	GCGC	2 cut(s)	393, 578
CseI	GACGC	1 cut(s)	410
CviAII	CATG	1 cut(s)	463
DdeI	CTNAG	3 cut(s)	129, 378, 482
DpnI	GATC	2 cut(s)	237, 285
DpnII	GATC	2 cut(s)	235, 283
Eam1104I	CTCTTC	4 cut(s)	215, 355, 450, 534
EarI	CTCTTC	4 cut(s)	215, 355, 450, 534
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	126
Eco47III	AGCGCT	2 cut(s)	392, 577
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	94, 157
EcoRV	GATATC	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	1 cut(s)	466
FaiI	YATR	7 cut(s)	72, 81, 195, 399, 420, 464, 651
FatI	CATG	1 cut(s)	462
FauI	CCCGC	1 cut(s)	524
Fnu4HI	GCNGC	2 cut(s)	326, 383
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	2 cut(s)	326, 383
FspBI	CTAG	4 cut(s)	204, 330, 366, 498
GlaI	GCGC	2 cut(s)	392, 577
GluI	GCNGC	2 cut(s)	326, 383
GsuI	CTGGAG	1 cut(s)	272
HaeII	RGCGCY	2 cut(s)	394, 579
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	2 cut(s)	393, 578
Hin1II	CATG	1 cut(s)	466
Hin6I	GCGC	2 cut(s)	391, 576
HinP1I	GCGC	2 cut(s)	391, 576
HindIII	AAGCTT	2 cut(s)	302, 446
HinfI	GANTC	1 cut(s)	245
HphI	GGTGA	2 cut(s)	548, 654
Hpy188I	TCNGA	3 cut(s)	130, 186, 609
Hpy188III	TCNNGA	5 cut(s)	36, 209, 309, 452, 463
Hpy99I	CGWCG	1 cut(s)	562
HpyAV	CCTTC	3 cut(s)	57, 367, 696
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	4 cut(s)	325, 341, 614, 621
HpyF10VI	GCNNNNNNNGC	4 cut(s)	322, 331, 388, 584
HpyF3I	CTNAG	3 cut(s)	129, 378, 482
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	1 cut(s)	466
HspAI	GCGC	2 cut(s)	391, 576
Kzo9I	GATC	2 cut(s)	235, 283
LguI	GCTCTTC	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	258
Lsp1109I	GCAGC	2 cut(s)	337, 394
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	4 cut(s)	204, 330, 366, 498
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	2 cut(s)	237, 285
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	2 cut(s)	235, 283
MboII	GAAGA	6 cut(s)	232, 307, 372, 467, 484, 551
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	2 cut(s)	203, 318
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	8 cut(s)	61, 140, 249, 259, 262, 451, 584, 637
MseI	TTAA	3 cut(s)	164, 276, 636
MspR9I	CCNGG	2 cut(s)	96, 159
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	2 cut(s)	96, 159
MwoI	GCNNNNNNNGC	4 cut(s)	322, 331, 388, 584
NdeII	GATC	2 cut(s)	235, 283
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	3 cut(s)	156, 285, 350
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	571
PagI	TCATGA	1 cut(s)	462
PciSI	GCTCTTC	1 cut(s)	355
PctI	GAATGC	1 cut(s)	623
PfoI	TCCNGGA	2 cut(s)	94, 157
PkrI	GCNGC	2 cut(s)	327, 384
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PshBI	ATTAAT	2 cut(s)	164, 636
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	94, 157
PspGI	CCWGG	2 cut(s)	94, 157
PspN4I	GGNNCC	3 cut(s)	156, 285, 350
PsuI	RGATCY	1 cut(s)	283
SacI	GAGCTC	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	355
SaqAI	TTAA	3 cut(s)	164, 276, 636
SatI	GCNGC	2 cut(s)	326, 383
Sau3AI	GATC	2 cut(s)	235, 283
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	96, 159
SduI	GDGCHC	2 cut(s)	203, 318
SfaNI	GCATC	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	571
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SsiI	CCGC	2 cut(s)	189, 517
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	4 cut(s)	204, 330, 366, 498
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	94, 157
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	3 cut(s)	37, 140, 571
Tru1I	TTAA	3 cut(s)	164, 276, 636
Tru9I	TTAA	3 cut(s)	164, 276, 636
TscAI	CASTG	2 cut(s)	255, 529
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	2 cut(s)	325, 382
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	4 cut(s)	122, 314, 479, 504
TspRI	CASTG	2 cut(s)	255, 529
VspI	ATTAAT	2 cut(s)	164, 636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XmaJI	CCTAGG	1 cut(s)	329
XspI	CTAG	4 cut(s)	204, 330, 366, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.