Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010394

Physical Location & Seq

Genomic Coordinates Forward (+)

14436305 .. 14437630

Gene Structure 1326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G121100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGATGAAGCATCAAGCAATGATGTCTGAGAGCTCACAAGGCTTGGTTCCTGGACTGGACAGGAACCACAGCAGTTATGGGTGCTCTAACCAAGACAAGAAGAAGAGATTGTCAACTGATCAGTTAGACTCACTTGAGAGGAGCTTTCAAGAGGAGATAAAGCTGGACCCTGATAGGAAGATGAAGCTTTCAAGAGAGCTTGGCCTTCAGCCTAGGCAAATTGCTGTTTGGTTCCAAAACAGAAGAGCCAGGTGGAAGGCCAAGCAGCTTGAGCGCTTGTATGATGCTCTTAAACAAGAGTATGATGTGGTCTCCAAAGAGAAGCAAAAGCTCCAAGAAGAGGTCATGAAATTGAAGACAATTCTGAGAGATGAAGTTGCTAGGAAACAAGTTTCCACCGGCTACACTGAAATCTCCGGTGAAGAGACGGTGGAGAGCACGTCGGTCGCCATTCGGAGCTCTAACAAAGGGGGAGGGACGAGCCAACATCAGGTGGCAGAGTGCAACTACCTCTTCAATGTTGAGGAATATAACCCAGTATCGCCACCTTTCTGGGGAGCTCTGCCTTCTTATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009965 GO:0010016 GO:0010022 GO:0010073 GO:0010432 GO:0010433 GO:0010434 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043565 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

194

Amino Acids

22.25

Weight (kDa)

8.43

Isoelectric Point (pI)

68.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03790 AT5G03790
fragaria_vesca	FvH4_6g17450 FvH4_6g17450 FvH4_6g17450
malus_domestica	MD12G1100600.v1.1 MD14G1094700.v1.1
prunus_persica	Prupe.7G121100_v2.0.a1
pyrus_communis	pycom12g09900 pycom14g09290
rosa_chinensis	RchiOBHm_Chr3g0471691
rosa_laevigata	RLG00000024142
rosa_multiflora	Rmu_sc0005631.1_g000017
rosa_roxburghii	Rroxscaffold_6G00409650
rosa_rugosa	Rorug03G0118900
rosa_samantha	Rh3AG170200 Rh3BG195900 Rh3CG186600 Rh3CG195100 Rh3DG179000
rosa_wichuraiana	Rw0G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	194
AfeI	AGCGCT	1 cut(s)	278
AfiI	CCNNNNNNNGG	3 cut(s)	343, 493, 557
AgsI	TTSAA	4 cut(s)	152, 195, 358, 520
AjiI	CACGTC	1 cut(s)	444
AjnI	CCWGG	2 cut(s)	52, 251
AluBI	AGCT	9 cut(s)	36, 147, 166, 190, 202, 271, 334, 462, 563
AluI	AGCT	9 cut(s)	36, 147, 166, 190, 202, 271, 334, 462, 563
Alw21I	GWGCWC	5 cut(s)	38, 89, 443, 464, 565
Alw26I	GTCTC	2 cut(s)	319, 422
Aor51HI	AGCGCT	1 cut(s)	278
AoxI	GGCC	2 cut(s)	205, 261
ApeKI	GCWGC	1 cut(s)	268
AspA2I	CCTAGG	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	169
AvrII	CCTAGG	1 cut(s)	215
BanII	GRGCYC	3 cut(s)	38, 464, 565
BbsI	GAAGAC	1 cut(s)	365
Bbv12I	GWGCWC	5 cut(s)	38, 89, 443, 464, 565
BbvI	GCAGC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	430, 464
BciT130I	CCWGG	2 cut(s)	54, 253
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	319, 422
BfaI	CTAG	2 cut(s)	216, 384
BfoI	RGCGCY	1 cut(s)	280
BisI	GCNGC	1 cut(s)	269
BlnI	CCTAGG	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	54, 253
Bme18I	GGWCC	1 cut(s)	169
BmgBI	CACGTC	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	4 cut(s)	51, 68, 171, 236
BmrFI	CCNGG	2 cut(s)	54, 253
BmrI	ACTGGG	1 cut(s)	533
BmsI	GCATC	2 cut(s)	22, 277
BmuI	ACTGGG	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	365
BpuEI	CTTGAG	2 cut(s)	158, 293
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	419
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 493, 557
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	63, 539
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	2 cut(s)	54, 253
BseDI	CCNNGG	1 cut(s)	215
BseLI	CCNNNNNNNGG	3 cut(s)	343, 493, 557
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	21, 359
BseNI	ACTGG	2 cut(s)	63, 539
BseRI	GAGGAG	2 cut(s)	157, 170
BseXI	GCAGC	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	450
BshFI	GGCC	2 cut(s)	207, 263
BsiEI	CGRYCG	1 cut(s)	450
BsiHKAI	GWGCWC	5 cut(s)	38, 89, 443, 464, 565
BsiSI	CCGG	2 cut(s)	402, 420
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	3 cut(s)	343, 493, 557
BsmAI	GTCTC	2 cut(s)	319, 422
BsmBI	CGTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	207, 263
Bso31I	GGTCTC	1 cut(s)	319
Bsp1286I	GDGCHC	5 cut(s)	38, 89, 443, 464, 565
Bsp143I	GATC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	207, 263
BspCNI	CTCAG	2 cut(s)	22, 360
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	4 cut(s)	51, 68, 171, 236
BspQI	GCTCTTC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	63, 539
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	215
Bst2UI	CCWGG	2 cut(s)	54, 253
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	5 cut(s)	101, 241, 336, 420, 521
BstDEI	CTNAG	2 cut(s)	30, 368
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	2 cut(s)	319, 422
BstMBI	GATC	1 cut(s)	121
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 274
BstNI	CCWGG	2 cut(s)	54, 253
BstSCI	CCNGG	2 cut(s)	52, 251
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	555
BsuRI	GGCC	2 cut(s)	207, 263
BtrI	CACGTC	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	408
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	169
CviAII	CATG	1 cut(s)	349
DdeI	CTNAG	2 cut(s)	30, 368
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	5 cut(s)	101, 241, 336, 420, 521
EarI	CTCTTC	5 cut(s)	101, 241, 336, 420, 521
Ecl136II	GAGCTC	3 cut(s)	36, 462, 563
Eco130I	CCWWGG	1 cut(s)	215
Eco24I	GRGCYC	3 cut(s)	38, 464, 565
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	169
Eco47III	AGCGCT	1 cut(s)	278
Eco53kI	GAGCTC	3 cut(s)	36, 462, 563
Eco57I	CTGAAG	1 cut(s)	194
EcoICRI	GAGCTC	3 cut(s)	36, 462, 563
EcoRII	CCWGG	2 cut(s)	52, 251
EcoT14I	CCWWGG	1 cut(s)	215
EcoT38I	GRGCYC	3 cut(s)	38, 464, 565
ErhI	CCWWGG	1 cut(s)	215
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	1 cut(s)	352
FaiI	YATR	5 cut(s)	81, 285, 306, 350, 534
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	269
FriOI	GRGCYC	3 cut(s)	38, 464, 565
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	2 cut(s)	216, 384
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	269
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	2 cut(s)	207, 263
HapII	CCGG	2 cut(s)	402, 420
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	2 cut(s)	402, 420
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	3 cut(s)	31, 369, 459
Hpy188III	TCNNGA	3 cut(s)	152, 195, 349
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	448
HpyAV	CCTTC	3 cut(s)	218, 253, 579
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 274
HpyF3I	CTNAG	2 cut(s)	30, 368
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	241
LmnI	GCTCC	4 cut(s)	144, 339, 459, 560
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	22, 277
MaeI	CTAG	2 cut(s)	216, 384
MaeII	ACGT	1 cut(s)	443
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	8 cut(s)	115, 118, 193, 258, 353, 370, 437, 508
MhlI	GDGCHC	5 cut(s)	38, 89, 443, 464, 565
MluCI	AATT	3 cut(s)	222, 353, 363
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	6 cut(s)	135, 148, 337, 470, 520, 524
MseI	TTAA	1 cut(s)	294
MspI	CCGG	2 cut(s)	402, 420
MspR9I	CCNGG	2 cut(s)	54, 253
MvaI	CCWGG	2 cut(s)	54, 253
MwoI	GCNNNNNNNGC	2 cut(s)	42, 274
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	4 cut(s)	51, 68, 171, 236
PagI	TCATGA	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	241
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp124BI	GAGCTC	3 cut(s)	38, 464, 565
Psp6I	CCWGG	2 cut(s)	52, 251
PspGI	CCWGG	2 cut(s)	52, 251
PspN4I	GGNNCC	4 cut(s)	51, 68, 171, 236
PspPI	GGNCC	1 cut(s)	169
SacI	GAGCTC	3 cut(s)	38, 464, 565
SapI	GCTCTTC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	54, 253
SduI	GDGCHC	5 cut(s)	38, 89, 443, 464, 565
SfaNI	GCATC	2 cut(s)	22, 277
SinI	GGWCC	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	137, 272
SmoI	CTYRAG	2 cut(s)	137, 272
Sse9I	AATT	3 cut(s)	222, 353, 363
SspMI	CTAG	2 cut(s)	216, 384
SstI	GAGCTC	3 cut(s)	38, 464, 565
StyD4I	CCNGG	2 cut(s)	52, 251
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	1 cut(s)	446
TaqII	GACCGA	1 cut(s)	436
TasI	AATT	3 cut(s)	222, 353, 363
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	4 cut(s)	23, 200, 365, 390
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XmaJI	CCTAGG	1 cut(s)	215
XspI	CTAG	2 cut(s)	216, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.