AT5G03970

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007822
Physical Location & Seq
Reverse (-)
1071498 .. 1073489
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03970.2

Sequence Viewer

Length: 1257 bp
ATGTCTTGTTCTGCCAGGTTAAAAACCAATTTGGGGATGACTTCTGCTCTGAGTACTCATGAGGTTCTTAACAGTAATGATACTATGTGTGAGATTCTTATCCTGCTTCCACCAGAAACGATATACAAGCTGATTTTGGTGTCCAAGAGATGGCTTGAGATTATAGCCAGCCCTTGCTTCCGTCACACTTACTTAGCCAAGTGGAAACCTAATTTTGAACTCATTGGCTTCTTCGTCTGCAGCTCAATGTACCTTGGAAGACGCATAGATGGAACTCGTCGCCCTCGCGCTGAGCCATCTCTTCCTTTGCTCTCAACCAGCAGTATTGGTGATGAAATTGAATCCTCTGGTATTCTGAAAAAGCTTGGATACTACATCGACTCTGCAGATGGTCTTCTACTCTGCGGCCGCCATCCAAAAGCTTACTACTTGTGGGATCCGAGTACACAGAAGCAGCAGCAACTTCCACGTCCCAGAGTTCATTTCGAAGAACTTTGTATGTCTTTGATTTCTGAGGATAGTCCTGATCAAGGGTTTAGCTACAAGGTGGTCCGGGCAGAGTGTGTAGCCTTTCCTGTTAACAGTACAAAGGTGAAGGTAGAGACTTTTTCCTCAAAAACTTCTACGTGGAGCTACTCAGAGCTTATTTGTCTCGAGCCTCTATCTCTCAGCCCGTGGACTCCAGGGAGAGTGATTAAAGGCGTTGTTTATTGGCATGCTAGAGGAGGTAAAATTGCCATATATGACTCAAACAGTGAGGAGAAACGGATTGATGTGATAAAGCTTCCGAAAACATATGACTATGATGAACAGGTTCTGGGAGAAACCGATGATGGGTCTTTACAATACGGATGGAGCAATAAGTCGGTAATGGAGGTATGGAAGCTTGAAAAGGTAGGCAATGTGCTTGAATGGAACCTGCTGTTTAAGGTGAATTTCAAGGCGATGTGGAAAATGAACCAAGCGGTAGCTACAAGATTCAGCACTTGGACTAAAGAAACGCAGCTGCTTGCGCTCTTCAATCAGAAGTCGGACTTGGTGTACATCAGATGTGATACACAAATCTTCATCTATCACACAGAGACTAAAAGGGTCGAAGTAGTTCAGTACCAAGGACGAAAATCGACACTCGTTTGGGATTTCAACAAAGTGGTGCCTTACTTTCGACGTACCTGGCCTTGTTCTCCTCTGTTTGAAAACAATGCCATGATGATCGACACTCCTCAATGCAACGCCTCTTCCGCAGGAAGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

418

Amino Acids

47.95

Weight (kDa)

8.61

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 109 - 352 1.6e-15 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 112 - 365 3.9e-08 F-box associated beta propeller domain
Beta-prop_AT5G49610-like PF23635 144 - 381 4e-08 F-box protein AT5G49610-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 927
AccB1I GGYRCC 1 cut(s) 1153
AccB7I CCANNNNNTGG 1 cut(s) 150
AccII CGCG 1 cut(s) 288
AciI CCGC 4 cut(s) 405, 409, 965, 1242
AclWI GGATC 2 cut(s) 431, 444
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 1 cut(s) 934
AfaI GTAC 7 cut(s) 55, 251, 445, 586, 1043, 1109, 1171
AfiI CCNNNNNNNGG 4 cut(s) 33, 150, 530, 834
AgsI TTSAA 8 cut(s) 218, 341, 890, 911, 940, 1021, 1144, 1196
AjiI CACGTC 1 cut(s) 470
AjnI CCWGG 3 cut(s) 14, 682, 1172
AjuI GAANNNNNNNTTGG 2 cut(s) 1019, 1051
Alw26I GTCTC 3 cut(s) 596, 656, 1076
AlwI GGATC 2 cut(s) 431, 444
AlwNI CAGNNNCTG 1 cut(s) 817
Ama87I CYCGRG 1 cut(s) 653
AoxI GGCC 2 cut(s) 406, 1175
ApeKI GCWGC 5 cut(s) 240, 454, 457, 1003, 1006
ApoI RAATTY 1 cut(s) 934
Asp700I GAANNNNTTC 2 cut(s) 813, 1101
AspLEI GCGC 2 cut(s) 290, 1015
AspS9I GGNCC 1 cut(s) 550
AsuC2I CCSGG 1 cut(s) 554
AsuHPI GGTGA 3 cut(s) 341, 604, 943
AsuII TTCGAA 1 cut(s) 486
AvaI CYCGRG 1 cut(s) 653
AvaII GGWCC 1 cut(s) 550
BamHI GGATCC 1 cut(s) 436
BanI GGYRCC 1 cut(s) 1153
BbsI GAAGAC 2 cut(s) 265, 386
BbvI GCAGC 5 cut(s) 252, 466, 469, 993, 1015
BccI CCATC 7 cut(s) 144, 263, 304, 383, 420, 827, 846
BciT130I CCWGG 3 cut(s) 16, 684, 1174
BciVI GTATCC 1 cut(s) 362
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 1 cut(s) 554
BcoDI GTCTC 3 cut(s) 596, 656, 1076
BfaI CTAG 1 cut(s) 720
BfmI CTRYAG 2 cut(s) 238, 384
BfuAI ACCTGC 1 cut(s) 927
BfuI GTATCC 1 cut(s) 362
BisI GCNGC 7 cut(s) 241, 406, 409, 455, 458, 1004, 1007
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 7 cut(s) 242, 407, 410, 456, 459, 1005, 1008
BmcAI AGTACT 1 cut(s) 55
Bme1390I CCNGG 4 cut(s) 16, 554, 684, 1174
Bme18I GGWCC 1 cut(s) 550
BmeT110I CYCGRG 1 cut(s) 653
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 550
BmiI GGNNCC 3 cut(s) 438, 917, 1155
BmrFI CCNGG 4 cut(s) 16, 554, 684, 1174
BpiI GAAGAC 2 cut(s) 265, 386
BpmI CTGGAG 1 cut(s) 666
Bpu1102I GCTNAGC 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 554
BsaAI YACGTR 1 cut(s) 627
BsaBI GATNNNNATC 1 cut(s) 98
BsaJI CCNNGG 4 cut(s) 253, 674, 683, 1111
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 150, 530, 834
Bse3DI GCAATG 1 cut(s) 907
Bse8I GATNNNNATC 1 cut(s) 98
BseBI CCWGG 3 cut(s) 16, 684, 1174
BseDI CCNNGG 4 cut(s) 253, 674, 683, 1111
BseGI GGATG 3 cut(s) 42, 412, 857
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 4 cut(s) 33, 150, 530, 834
BseMI GCAATG 1 cut(s) 907
BseMII CTCAG 5 cut(s) 41, 282, 504, 651, 682
BseRI GAGGAG 4 cut(s) 738, 773, 1176, 1212
BseX3I CGGCCG 1 cut(s) 406
BseXI GCAGC 5 cut(s) 252, 466, 469, 993, 1015
Bsh1236I CGCG 1 cut(s) 288
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 2 cut(s) 408, 1177
BshNI GGYRCC 1 cut(s) 1153
BsiEI CGRYCG 1 cut(s) 409
BsiHKCI CYCGRG 1 cut(s) 653
BsiSI CCGG 1 cut(s) 553
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 4 cut(s) 33, 150, 530, 834
BsmAI GTCTC 3 cut(s) 596, 656, 1076
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 2 cut(s) 408, 1177
BsoBI CYCGRG 1 cut(s) 653
Bsp119I TTCGAA 1 cut(s) 486
Bsp1407I TGTACA 1 cut(s) 1041
Bsp143I GATC 3 cut(s) 436, 526, 1212
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 4 cut(s) 405, 409, 965, 1242
BspANI GGCC 2 cut(s) 408, 1177
BspCNI CTCAG 5 cut(s) 42, 283, 505, 650, 681
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 3 cut(s) 438, 917, 1155
BspMAI CTGCAG 2 cut(s) 242, 388
BspMI ACCTGC 1 cut(s) 927
BspPI GGATC 2 cut(s) 431, 444
BspQI GCTCTTC 1 cut(s) 1022
BspT104I TTCGAA 1 cut(s) 486
BspT107I GGYRCC 1 cut(s) 1153
BsrDI GCAATG 1 cut(s) 907
BsrGI TGTACA 1 cut(s) 1041
BssECI CCNNGG 4 cut(s) 253, 674, 683, 1111
BssMI GATC 3 cut(s) 436, 526, 1212
BssT1I CCWWGG 2 cut(s) 253, 1111
Bst2UI CCWGG 3 cut(s) 16, 684, 1174
Bst4CI ACNGT 3 cut(s) 74, 584, 755
Bst6I CTCTTC 3 cut(s) 306, 1022, 1243
BstAUI TGTACA 1 cut(s) 1041
BstBAI YACGTR 1 cut(s) 627
BstBI TTCGAA 1 cut(s) 486
BstC8I GCNNGC 3 cut(s) 169, 717, 1011
BstDEI CTNAG 6 cut(s) 50, 193, 291, 513, 637, 668
BstDSI CCRYGG 1 cut(s) 674
BstENI CCTNNNNNAGG 1 cut(s) 528
BstF5I GGATG 3 cut(s) 42, 412, 857
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 2 cut(s) 290, 1015
BstKTI GATC 3 cut(s) 439, 529, 1215
BstMAI GTCTC 3 cut(s) 596, 656, 1076
BstMBI GATC 3 cut(s) 436, 526, 1212
BstMCI CGRYCG 1 cut(s) 409
BstMWI GCNNNNNNNGC 2 cut(s) 1012, 1241
BstNI CCWGG 3 cut(s) 16, 684, 1174
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 4 cut(s) 14, 552, 682, 1172
BstSFI CTRYAG 2 cut(s) 238, 384
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 5 cut(s) 252, 466, 469, 993, 1015
BstV2I GAAGAC 2 cut(s) 265, 386
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BstZI CGGCCG 1 cut(s) 406
BsuI GTATCC 1 cut(s) 362
BsuRI GGCC 2 cut(s) 408, 1177
BtgI CCRYGG 1 cut(s) 674
BtgZI GCGATG 1 cut(s) 959
BtrI CACGTC 1 cut(s) 470
BtsCI GGATG 3 cut(s) 42, 412, 857
BtsIMutI CAGTG 1 cut(s) 760
BveI ACCTGC 1 cut(s) 927
Cac8I GCNNGC 3 cut(s) 169, 717, 1011
CaiI CAGNNNCTG 1 cut(s) 817
CciI TCATGA 1 cut(s) 58
CciNI GCGGCCGC 1 cut(s) 406
CfoI GCGC 2 cut(s) 290, 1015
Cfr13I GGNCC 1 cut(s) 550
CseI GACGC 1 cut(s) 270
Csp6I GTAC 7 cut(s) 54, 250, 444, 585, 1042, 1108, 1170
CviAII CATG 3 cut(s) 59, 716, 1207
CviQI GTAC 7 cut(s) 54, 250, 444, 585, 1042, 1108, 1170
DdeI CTNAG 6 cut(s) 50, 193, 291, 513, 637, 668
DpnI GATC 3 cut(s) 438, 528, 1214
DpnII GATC 3 cut(s) 436, 526, 1212
EaeI YGGCCR 1 cut(s) 406
EagI CGGCCG 1 cut(s) 406
Eam1104I CTCTTC 3 cut(s) 306, 1022, 1243
EarI CTCTTC 3 cut(s) 306, 1022, 1243
EclXI CGGCCG 1 cut(s) 406
Eco130I CCWWGG 2 cut(s) 253, 1111
Eco47I GGWCC 1 cut(s) 550
Eco52I CGGCCG 1 cut(s) 406
Eco88I CYCGRG 1 cut(s) 653
EcoNI CCTNNNNNAGG 1 cut(s) 528
EcoRII CCWGG 3 cut(s) 14, 682, 1172
EcoT14I CCWWGG 2 cut(s) 253, 1111
ErhI CCWWGG 2 cut(s) 253, 1111
FaeI CATG 3 cut(s) 62, 719, 1210
FalI AAGNNNNNCTT 2 cut(s) 1019, 1051
FaqI GGGAC 1 cut(s) 456
FatI CATG 3 cut(s) 58, 715, 1206
FauNDI CATATG 1 cut(s) 796
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 7 cut(s) 241, 406, 409, 455, 458, 1004, 1007
FokI GGATG 3 cut(s) 49, 399, 864
Fsp4HI GCNGC 7 cut(s) 241, 406, 409, 455, 458, 1004, 1007
FspBI CTAG 1 cut(s) 720
GlaI GCGC 2 cut(s) 289, 1014
GluI GCNGC 7 cut(s) 241, 406, 409, 455, 458, 1004, 1007
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 2 cut(s) 408, 1177
HapII CCGG 1 cut(s) 553
HgaI GACGC 1 cut(s) 270
HhaI GCGC 2 cut(s) 290, 1015
Hin1II CATG 3 cut(s) 62, 719, 1210
Hin6I GCGC 2 cut(s) 288, 1013
HinP1I GCGC 2 cut(s) 288, 1013
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HindIII AAGCTT 4 cut(s) 362, 420, 782, 884
HinfI GANTC 6 cut(s) 94, 341, 380, 679, 746, 978
HpaI GTTAAC 1 cut(s) 580
HpaII CCGG 1 cut(s) 553
HphI GGTGA 3 cut(s) 341, 604, 943
Hpy166II GTNNAC 4 cut(s) 446, 580, 678, 1042
Hpy188I TCNGA 9 cut(s) 51, 357, 441, 514, 640, 789, 1026, 1033, 1049
Hpy188III TCNNGA 3 cut(s) 59, 524, 653
Hpy8I GTNNAC 4 cut(s) 446, 580, 678, 1042
Hpy99I CGWCG 2 cut(s) 282, 1170
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 3 cut(s) 74, 584, 755
HpyCH4IV ACGT 3 cut(s) 469, 626, 1168
HpyCH4V TGCA 3 cut(s) 240, 386, 1230
HpyF10VI GCNNNNNNNGC 2 cut(s) 1012, 1241
HpyF3I CTNAG 6 cut(s) 50, 193, 291, 513, 637, 668
HpySE526I ACGT 3 cut(s) 469, 626, 1168
Hsp92II CATG 3 cut(s) 62, 719, 1210
HspAI GCGC 2 cut(s) 288, 1013
Ksp22I TGATCA 1 cut(s) 526
KspAI GTTAAC 1 cut(s) 580
Kzo9I GATC 3 cut(s) 436, 526, 1212
LguI GCTCTTC 1 cut(s) 1022
LmnI GCTCC 2 cut(s) 630, 855
Lsp1109I GCAGC 5 cut(s) 252, 466, 469, 993, 1015
MaeI CTAG 1 cut(s) 720
MaeII ACGT 3 cut(s) 469, 626, 1168
MaeIII GTNAC 2 cut(s) 182, 1250
MalI GATC 3 cut(s) 438, 528, 1214
MboI GATC 3 cut(s) 436, 526, 1212
MboII GAAGA 8 cut(s) 223, 270, 293, 386, 500, 1009, 1057, 1230
MflI RGATCY 1 cut(s) 436
MluCI AATT 5 cut(s) 28, 211, 336, 732, 934
MlyI GAGTC 3 cut(s) 374, 673, 740
MmeI TCCRAC 1 cut(s) 1011
MroXI GAANNNNTTC 2 cut(s) 813, 1101
MseI TTAA 5 cut(s) 20, 69, 579, 696, 927
MspA1I CMGCKG 1 cut(s) 1006
MspI CCGG 1 cut(s) 553
MspR9I CCNGG 4 cut(s) 16, 554, 684, 1174
MvaI CCWGG 3 cut(s) 16, 684, 1174
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 1012, 1241
NciI CCSGG 1 cut(s) 554
NdeI CATATG 1 cut(s) 796
NdeII GATC 3 cut(s) 436, 526, 1212
NlaIII CATG 3 cut(s) 62, 719, 1210
NlaIV GGNNCC 3 cut(s) 438, 917, 1155
NmuCI GTSAC 1 cut(s) 182
NotI GCGGCCGC 1 cut(s) 406
NspI RCATGY 1 cut(s) 719
NspV TTCGAA 1 cut(s) 486
PaeI GCATGC 1 cut(s) 719
PaeR7I CTCGAG 1 cut(s) 653
PagI TCATGA 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 1022
PdmI GAANNNNTTC 2 cut(s) 813, 1101
PfeI GAWTC 3 cut(s) 94, 341, 978
PflMI CCANNNNNTGG 1 cut(s) 150
PkrI GCNGC 7 cut(s) 242, 407, 410, 456, 459, 1005, 1008
PleI GAGTC 3 cut(s) 374, 673, 740
PpsI GAGTC 3 cut(s) 374, 673, 740
Ppu21I YACGTR 1 cut(s) 627
Psp6I CCWGG 3 cut(s) 14, 682, 1172
PspGI CCWGG 3 cut(s) 14, 682, 1172
PspN4I GGNNCC 3 cut(s) 438, 917, 1155
PspPI GGNCC 1 cut(s) 550
PstI CTGCAG 2 cut(s) 242, 388
PstNI CAGNNNCTG 1 cut(s) 817
PsuI RGATCY 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 1006
RsaI GTAC 7 cut(s) 55, 251, 445, 586, 1043, 1109, 1171
RsaNI GTAC 7 cut(s) 54, 250, 444, 585, 1042, 1108, 1170
SapI GCTCTTC 1 cut(s) 1022
SaqAI TTAA 5 cut(s) 20, 69, 579, 696, 927
SatI GCNGC 7 cut(s) 241, 406, 409, 455, 458, 1004, 1007
Sau3AI GATC 3 cut(s) 436, 526, 1212
Sau96I GGNCC 1 cut(s) 550
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 3 cut(s) 374, 673, 740
ScrFI CCNGG 4 cut(s) 16, 554, 684, 1174
SfcI CTRYAG 2 cut(s) 238, 384
Sfr274I CTCGAG 1 cut(s) 653
SfuI TTCGAA 1 cut(s) 486
SinI GGWCC 1 cut(s) 550
SlaI CTCGAG 1 cut(s) 653
SmlI CTYRAG 2 cut(s) 155, 653
SmoI CTYRAG 2 cut(s) 155, 653
SphI GCATGC 1 cut(s) 719
Sse9I AATT 5 cut(s) 28, 211, 336, 732, 934
SsiI CCGC 4 cut(s) 405, 409, 965, 1242
SspMI CTAG 1 cut(s) 720
StyD4I CCNGG 4 cut(s) 14, 552, 682, 1172
StyI CCWWGG 2 cut(s) 253, 1111
TaaI ACNGT 3 cut(s) 74, 584, 755
TaiI ACGT 3 cut(s) 472, 629, 1171
TaqI TCGA 7 cut(s) 378, 486, 654, 1095, 1124, 1165, 1215
TasI AATT 5 cut(s) 28, 211, 336, 732, 934
TatI WGTACW 4 cut(s) 53, 443, 584, 1041
TauI GCSGC 2 cut(s) 408, 411
TfiI GAWTC 3 cut(s) 94, 341, 978
Tru1I TTAA 5 cut(s) 20, 69, 579, 696, 927
Tru9I TTAA 5 cut(s) 20, 69, 579, 696, 927
TscAI CASTG 1 cut(s) 760
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 5 cut(s) 240, 454, 457, 1003, 1006
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 5 cut(s) 348, 470, 822, 971, 1057
TspGWI ACGGA 3 cut(s) 170, 781, 864
TspRI CASTG 1 cut(s) 760
Van91I CCANNNNNTGG 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 550
XagI CCTNNNNNAGG 1 cut(s) 528
XapI RAATTY 1 cut(s) 934
XceI RCATGY 1 cut(s) 719
XhoI CTCGAG 1 cut(s) 653
XmnI GAANNNNTTC 2 cut(s) 813, 1101
XspI CTAG 1 cut(s) 720
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.