RchiOBHm_Chr3g0450221

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007822
Physical Location & Seq
Forward (+)
1796376 .. 1798911
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41756

Sequence Viewer

Length: 945 bp
ATGAGTCGACAAGAGAAAAAGAAGGAAAAGATATTGGAAAATGATGTTCATGCTGCATTGACCTGCGACGACATCCTAAATGAGATACTTCTTCGGCTGCCAGATAAATTTATTTTCGGATTCATACTTGTGTCAAAGAGGTGGCTTCGTGTGATATGTAGCTCTTCTTTTCGATCTGATTATCATGCTAGATGGAGAGTGAACTTTCATCTTTTGGGTTTCTTTGTCTGCAACCAGCTGTACCTTTGCAGACGTAAAGATGGGATGCGCCGACCCAAATCTGAGCCTGCACTTCAGTTATTGAGAGCTTGTGAGGAAGGTGATGATGTATGCAATGATTTGATGTCTTCTGGGAACTGCAAACAGCTTGGTTATTTCATTGACTCTGCCAATGGGCTTCTTCTCTGTGGCCGCCACCCATTGACTTATTCTGTCTGGAACCCAATCAACAAAGTGCTATTCCAACTTCCTCAACCTCAGCGTTTCTACAAACGCTTGTGTATGGCATTCATCGCTGAGGACTATTTCAATGACATTCTTCACTACAAGGTTATTCGTGCAAATTTGACTGGTACATGGAAGCATTTCACGCTCACTTGCTCTTCAAATTTTTCCTTGCGCCCCTGGACAGTGGCTACTGTGATCAATGGTGTAGTATACTGGTATGCGACACAGGGAAAGATAGCCATTAAGGAAAGTTTAACCATTTATGACCCACGTATTGGAAACACGTGTATAGTTTTGCTTAAATTACCTGATGGGAAGATTTCGCAGGATTATGATGAGTTTGTTCTGGGGGAGTCCTCTGATGGGCTATTGCAGTATGGTCAGAGCAGCAAGTCAGGCATGGAGATATGGGTTCTTGAGAAGGAACAAGATAGTATCTCATCTATTACCACAAGCAATGTGCATCAAATCGCAAGTGGAATTTTAGATACAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

314

Amino Acids

36.05

Weight (kDa)

8.23

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 722
AccI GTMKAC 2 cut(s) 7, 657
AciI CCGC 1 cut(s) 412
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 4 cut(s) 107, 562, 607, 927
AcuI CTGAAG 1 cut(s) 278
AcvI CACGTG 1 cut(s) 732
AfaI GTAC 2 cut(s) 242, 574
AfiI CCNNNNNNNGG 2 cut(s) 722, 810
AflIII ACRYGT 2 cut(s) 729, 731
AgsI TTSAA 2 cut(s) 529, 606
AjnI CCWGG 1 cut(s) 623
AluBI AGCT 4 cut(s) 162, 238, 308, 367
AluI AGCT 4 cut(s) 162, 238, 308, 367
AoxI GGCC 1 cut(s) 409
ApeKI GCWGC 3 cut(s) 53, 97, 834
ApoI RAATTY 4 cut(s) 107, 562, 607, 927
Asp700I GAANNNNTTC 1 cut(s) 584
AspLEI GCGC 2 cut(s) 270, 621
AsuHPI GGTGA 1 cut(s) 332
BbrPI CACGTG 1 cut(s) 732
BbsI GAAGAC 1 cut(s) 339
BbvCI CCTCAGC 2 cut(s) 477, 516
BbvI GCAGC 3 cut(s) 40, 84, 846
BccI CCATC 4 cut(s) 186, 254, 752, 803
BciT130I CCWGG 1 cut(s) 625
BclI TGATCA 1 cut(s) 642
BfaI CTAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 71
BisI GCNGC 4 cut(s) 54, 98, 412, 835
BlsI GCNGC 4 cut(s) 55, 99, 413, 836
Bme1390I CCNGG 1 cut(s) 625
BmiI GGNNCC 1 cut(s) 440
BmrFI CCNGG 1 cut(s) 625
BmsI GCATC 2 cut(s) 255, 919
BpiI GAAGAC 1 cut(s) 339
Bpu10I CCTNAGC 2 cut(s) 477, 516
BpuEI CTTGAG 1 cut(s) 884
BsaAI YACGTR 2 cut(s) 719, 732
BsaJI CCNNGG 1 cut(s) 623
Bsc4I CCNNNNNNNGG 2 cut(s) 722, 810
Bse1I ACTGG 2 cut(s) 574, 665
Bse3DI GCAATG 2 cut(s) 340, 910
BseBI CCWGG 1 cut(s) 625
BseDI CCNNGG 1 cut(s) 623
BseGI GGATG 2 cut(s) 72, 270
BseLI CCNNNNNNNGG 2 cut(s) 722, 810
BseMI GCAATG 2 cut(s) 340, 910
BseMII CTCAG 3 cut(s) 273, 491, 507
BseNI ACTGG 2 cut(s) 574, 665
BseXI GCAGC 3 cut(s) 40, 84, 846
BsgI GTGCAG 1 cut(s) 273
BshFI GGCC 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 722, 810
BsmI GAATGC 1 cut(s) 506
BsnI GGCC 1 cut(s) 411
Bsp143I GATC 2 cut(s) 173, 642
BspACI CCGC 1 cut(s) 412
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 3 cut(s) 274, 490, 508
BspLI GGNNCC 1 cut(s) 440
BspMI ACCTGC 1 cut(s) 71
BspQI GCTCTTC 2 cut(s) 169, 607
BsrDI GCAATG 2 cut(s) 340, 910
BsrI ACTGG 2 cut(s) 574, 665
BssECI CCNNGG 1 cut(s) 623
BssMI GATC 2 cut(s) 173, 642
BssNAI GTATAC 1 cut(s) 658
Bst1107I GTATAC 1 cut(s) 658
Bst2UI CCWGG 1 cut(s) 625
Bst4CI ACNGT 2 cut(s) 631, 640
Bst6I CTCTTC 2 cut(s) 169, 607
BstBAI YACGTR 2 cut(s) 719, 732
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 3 cut(s) 282, 477, 516
BstF5I GGATG 2 cut(s) 72, 270
BstHHI GCGC 2 cut(s) 270, 621
BstKTI GATC 2 cut(s) 176, 645
BstMBI GATC 2 cut(s) 173, 642
BstMWI GCNNNNNNNGC 3 cut(s) 512, 589, 843
BstNI CCWGG 1 cut(s) 625
BstSCI CCNGG 1 cut(s) 623
BstV1I GCAGC 3 cut(s) 40, 84, 846
BstV2I GAAGAC 1 cut(s) 339
BstZ17I GTATAC 1 cut(s) 658
BsuRI GGCC 1 cut(s) 411
BtgZI GCGATG 1 cut(s) 496
BtsCI GGATG 2 cut(s) 72, 270
BtsIMutI CAGTG 1 cut(s) 636
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 288
CfoI GCGC 2 cut(s) 270, 621
Csp6I GTAC 2 cut(s) 241, 573
CviAII CATG 4 cut(s) 50, 185, 576, 847
CviQI GTAC 2 cut(s) 241, 573
DdeI CTNAG 3 cut(s) 282, 477, 516
DpnI GATC 2 cut(s) 175, 644
DpnII GATC 2 cut(s) 173, 642
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 2 cut(s) 169, 607
EarI CTCTTC 2 cut(s) 169, 607
Eco57I CTGAAG 1 cut(s) 278
Eco72I CACGTG 1 cut(s) 732
EcoRII CCWGG 1 cut(s) 623
FaeI CATG 4 cut(s) 53, 188, 579, 850
FatI CATG 4 cut(s) 49, 184, 575, 846
FbaI TGATCA 1 cut(s) 642
FblI GTMKAC 2 cut(s) 7, 657
Fnu4HI GCNGC 4 cut(s) 54, 98, 412, 835
FokI GGATG 2 cut(s) 59, 277
Fsp4HI GCNGC 4 cut(s) 54, 98, 412, 835
FspBI CTAG 1 cut(s) 189
GlaI GCGC 2 cut(s) 269, 620
GluI GCNGC 4 cut(s) 54, 98, 412, 835
HaeIII GGCC 1 cut(s) 411
HhaI GCGC 2 cut(s) 270, 621
Hin1II CATG 4 cut(s) 53, 188, 579, 850
Hin6I GCGC 2 cut(s) 268, 619
HinP1I GCGC 2 cut(s) 268, 619
HincII GTYRAC 1 cut(s) 8
HindII GTYRAC 1 cut(s) 8
HinfI GANTC 4 cut(s) 4, 120, 383, 800
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 3 cut(s) 8, 202, 658
Hpy188I TCNGA 5 cut(s) 119, 178, 283, 808, 831
Hpy188III TCNNGA 2 cut(s) 436, 863
Hpy8I GTNNAC 3 cut(s) 8, 202, 658
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 3 cut(s) 16, 311, 862
HpyCH4III ACNGT 2 cut(s) 631, 640
HpyCH4IV ACGT 3 cut(s) 253, 718, 731
HpyCH4V TGCA 9 cut(s) 56, 231, 249, 290, 333, 360, 560, 820, 910
HpyF10VI GCNNNNNNNGC 3 cut(s) 512, 589, 843
HpyF3I CTNAG 3 cut(s) 282, 477, 516
HpySE526I ACGT 3 cut(s) 253, 718, 731
Hsp92II CATG 4 cut(s) 53, 188, 579, 850
HspAI GCGC 2 cut(s) 268, 619
Ksp22I TGATCA 1 cut(s) 642
Kzo9I GATC 2 cut(s) 173, 642
LguI GCTCTTC 2 cut(s) 169, 607
Lsp1109I GCAGC 3 cut(s) 40, 84, 846
LweI GCATC 2 cut(s) 255, 919
MaeI CTAG 1 cut(s) 189
MaeII ACGT 3 cut(s) 253, 718, 731
MalI GATC 2 cut(s) 175, 644
MboI GATC 2 cut(s) 173, 642
MboII GAAGA 7 cut(s) 83, 156, 339, 392, 530, 594, 775
MluCI AATT 5 cut(s) 107, 562, 607, 749, 927
MlyI GAGTC 3 cut(s) 13, 377, 809
MmeI TCCRAC 1 cut(s) 487
MnlI CCTC 6 cut(s) 132, 307, 480, 486, 511, 814
MroXI GAANNNNTTC 1 cut(s) 584
MseI TTAA 3 cut(s) 690, 701, 747
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 625
Mva1269I GAATGC 1 cut(s) 506
MvaI CCWGG 1 cut(s) 625
MwoI GCNNNNNNNGC 3 cut(s) 512, 589, 843
NdeII GATC 2 cut(s) 173, 642
NlaIII CATG 4 cut(s) 53, 188, 579, 850
NlaIV GGNNCC 1 cut(s) 440
PciSI GCTCTTC 2 cut(s) 169, 607
PctI GAATGC 1 cut(s) 506
PdmI GAANNNNTTC 1 cut(s) 584
PfeI GAWTC 1 cut(s) 120
PflMI CCANNNNNTGG 1 cut(s) 722
PkrI GCNGC 4 cut(s) 55, 99, 413, 836
PleI GAGTC 3 cut(s) 12, 377, 808
PmaCI CACGTG 1 cut(s) 732
PmlI CACGTG 1 cut(s) 732
PpsI GAGTC 3 cut(s) 12, 377, 808
Ppu21I YACGTR 2 cut(s) 719, 732
Psp6I CCWGG 1 cut(s) 623
PspCI CACGTG 1 cut(s) 732
PspGI CCWGG 1 cut(s) 623
PspN4I GGNNCC 1 cut(s) 440
PvuII CAGCTG 1 cut(s) 238
RsaI GTAC 2 cut(s) 242, 574
RsaNI GTAC 2 cut(s) 241, 573
RseI CAYNNNNRTG 1 cut(s) 128
SalI GTCGAC 1 cut(s) 6
SapI GCTCTTC 2 cut(s) 169, 607
SaqAI TTAA 3 cut(s) 690, 701, 747
SatI GCNGC 4 cut(s) 54, 98, 412, 835
Sau3AI GATC 2 cut(s) 173, 642
SchI GAGTC 3 cut(s) 13, 377, 809
ScrFI CCNGG 1 cut(s) 625
SfaNI GCATC 2 cut(s) 255, 919
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 863
SmoI CTYRAG 1 cut(s) 863
Sse9I AATT 5 cut(s) 107, 562, 607, 749, 927
SsiI CCGC 1 cut(s) 412
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 623
TaaI ACNGT 2 cut(s) 631, 640
TaiI ACGT 3 cut(s) 256, 721, 734
TaqI TCGA 2 cut(s) 7, 172
TasI AATT 5 cut(s) 107, 562, 607, 749, 927
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 3 cut(s) 690, 701, 747
Tru9I TTAA 3 cut(s) 690, 701, 747
TscAI CASTG 1 cut(s) 636
TseI GCWGC 3 cut(s) 53, 97, 834
TspDTI ATGAA 5 cut(s) 38, 112, 197, 367, 499
TspRI CASTG 1 cut(s) 636
Van91I CCANNNNNTGG 1 cut(s) 722
XapI RAATTY 4 cut(s) 107, 562, 607, 927
XmiI GTMKAC 2 cut(s) 7, 657
XmnI GAANNNNTTC 1 cut(s) 584
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.