Rw3G002060

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0007822
Physical Location & Seq
Forward (+)
1801374 .. 1803084
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002060.1

Sequence Viewer

Length: 993 bp
ATGGCAGATGGGTTTGCAATTACAGGTGATATGAGTCGACAAGAGAAAAAGAAGGAAAAGATATTGGAAAATGATGTTCATGCTGCATTGACCTGCGACGACATCCTAAATGAGATACTTCTTCGGCTGCCAGATAAATTTATTTTCGGATTCATACTTGTGTCAAAGAGGTGGCTTCGTGTGATATGTAGCTCTTCTTTTCGATCTGATTATCATGCTAGATGGAGAGTGAACTTTCATCTTTTGGGTTTCTTTGTCTGCAACCAGCTGTACCTTTGCAGACGTAAAGATGGGATGCGCCGACCCAAATTTGAGCCTGCACTTCAGTTATTGAGAGCTTGTGAGGAAGGTGATGATGTATGCAATGATTTGATGTCTTCTGGGAACTGCAAACAGCTTGGTTATTTCATTGACTCTGCCAATGGGCTTCTTCTCTGTGGCCGCCACCCATTGACTTATTCTGTCTGGAACCCAATCAACAAAGTGCTATTCCAACTTCCTCAACCTCAGCGTTTCTACAAACGCTTGTGTATGGCATTCATCGCTGAGGACTATTTCAATGACATTCTTCACTACAAGGTTAACACTGTCTCCATCGAGACTTTCTCTTCAGTGACTGGTACATGGAAGCATTTCACGCTCACTTGCTCTTCAAATTTTTCCTTGCGCCCCTGGACAGTGGCTACTGTGATCAATGGTGTAGTATACTGGTATGCGACACAGGGAAAGATAGCCATTAAGGAAAGTTTAACCATTTATGACCCACGTATTGGAAACACGTGTATAGTTTTGCTTAAATTACCTGATGGGAAGATTTCGCAGGAATATGATGAGTTTGTTCTTGGGGAGTCCTCTGATGGGCTATTGCAGTATGGTCAGAGCAGCAAGTCAGGCATGGAGATATGGGTTCTTGAGAAGGAACAAGATAGTATCTCATCTATTACCACAAGCAATGTGCATCAAATCGCAAGTGGAATTTTAGATACAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

330

Amino Acids

37.7

Weight (kDa)

6.66

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 133 - 307 1.2e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 770
AccI GTMKAC 2 cut(s) 37, 705
AciI CCGC 1 cut(s) 442
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 4 cut(s) 137, 308, 655, 975
AcuI CTGAAG 2 cut(s) 308, 594
AcvI CACGTG 1 cut(s) 780
AfaI GTAC 2 cut(s) 272, 622
AfiI CCNNNNNNNGG 2 cut(s) 770, 858
AflIII ACRYGT 2 cut(s) 777, 779
AgsI TTSAA 2 cut(s) 559, 654
AjnI CCWGG 1 cut(s) 671
AluBI AGCT 4 cut(s) 192, 268, 338, 397
AluI AGCT 4 cut(s) 192, 268, 338, 397
Alw26I GTCTC 2 cut(s) 593, 595
AlwNI CAGNNNCTG 1 cut(s) 617
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 3 cut(s) 83, 127, 882
ApoI RAATTY 4 cut(s) 137, 308, 655, 975
Asp700I GAANNNNTTC 1 cut(s) 632
AspLEI GCGC 2 cut(s) 300, 669
AsuHPI GGTGA 2 cut(s) 38, 362
BbrPI CACGTG 1 cut(s) 780
BbsI GAAGAC 1 cut(s) 369
BbvCI CCTCAGC 2 cut(s) 507, 546
BbvI GCAGC 3 cut(s) 70, 114, 894
BccI CCATC 6 cut(s) 2, 216, 284, 602, 800, 851
BciT130I CCWGG 1 cut(s) 673
BclI TGATCA 1 cut(s) 690
BcoDI GTCTC 2 cut(s) 593, 595
BfaI CTAG 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 101
BisI GCNGC 4 cut(s) 84, 128, 442, 883
BlsI GCNGC 4 cut(s) 85, 129, 443, 884
Bme1390I CCNGG 1 cut(s) 673
BmiI GGNNCC 1 cut(s) 470
BmrFI CCNGG 1 cut(s) 673
BmsI GCATC 2 cut(s) 285, 967
BpiI GAAGAC 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 590, 622
Bpu10I CCTNAGC 2 cut(s) 507, 546
BpuEI CTTGAG 1 cut(s) 932
BsaAI YACGTR 2 cut(s) 767, 780
BsaJI CCNNGG 1 cut(s) 671
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 2 cut(s) 770, 858
Bse1I ACTGG 2 cut(s) 622, 713
Bse3DI GCAATG 2 cut(s) 370, 958
BseBI CCWGG 1 cut(s) 673
BseDI CCNNGG 1 cut(s) 671
BseGI GGATG 2 cut(s) 102, 300
BseLI CCNNNNNNNGG 2 cut(s) 770, 858
BseMI GCAATG 2 cut(s) 370, 958
BseMII CTCAG 2 cut(s) 521, 537
BseNI ACTGG 2 cut(s) 622, 713
BseXI GCAGC 3 cut(s) 70, 114, 894
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 1 cut(s) 441
BslI CCNNNNNNNGG 2 cut(s) 770, 858
BsmAI GTCTC 2 cut(s) 593, 595
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 1 cut(s) 441
Bsp143I GATC 2 cut(s) 203, 690
BspACI CCGC 1 cut(s) 442
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 2 cut(s) 520, 538
BspLI GGNNCC 1 cut(s) 470
BspMI ACCTGC 1 cut(s) 101
BspQI GCTCTTC 2 cut(s) 199, 655
BsrDI GCAATG 2 cut(s) 370, 958
BsrI ACTGG 2 cut(s) 622, 713
BssECI CCNNGG 1 cut(s) 671
BssMI GATC 2 cut(s) 203, 690
BssNAI GTATAC 1 cut(s) 706
Bst1107I GTATAC 1 cut(s) 706
Bst2UI CCWGG 1 cut(s) 673
Bst4CI ACNGT 3 cut(s) 589, 679, 688
Bst6I CTCTTC 3 cut(s) 199, 613, 655
BstBAI YACGTR 2 cut(s) 767, 780
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 507, 546
BstF5I GGATG 2 cut(s) 102, 300
BstHHI GCGC 2 cut(s) 300, 669
BstKTI GATC 2 cut(s) 206, 693
BstMAI GTCTC 2 cut(s) 593, 595
BstMBI GATC 2 cut(s) 203, 690
BstMWI GCNNNNNNNGC 3 cut(s) 542, 637, 891
BstNI CCWGG 1 cut(s) 673
BstSCI CCNGG 1 cut(s) 671
BstV1I GCAGC 3 cut(s) 70, 114, 894
BstV2I GAAGAC 1 cut(s) 369
BstZ17I GTATAC 1 cut(s) 706
BsuRI GGCC 1 cut(s) 441
BtgZI GCGATG 1 cut(s) 526
BtsCI GGATG 2 cut(s) 102, 300
BtsIMutI CAGTG 3 cut(s) 585, 618, 684
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 318
CaiI CAGNNNCTG 1 cut(s) 617
CfoI GCGC 2 cut(s) 300, 669
Csp6I GTAC 2 cut(s) 271, 621
CviAII CATG 4 cut(s) 80, 215, 624, 895
CviQI GTAC 2 cut(s) 271, 621
DdeI CTNAG 2 cut(s) 507, 546
DpnI GATC 2 cut(s) 205, 692
DpnII GATC 2 cut(s) 203, 690
EaeI YGGCCR 1 cut(s) 439
Eam1104I CTCTTC 3 cut(s) 199, 613, 655
EarI CTCTTC 3 cut(s) 199, 613, 655
Eco57I CTGAAG 2 cut(s) 308, 594
Eco72I CACGTG 1 cut(s) 780
EcoRII CCWGG 1 cut(s) 671
FaeI CATG 4 cut(s) 83, 218, 627, 898
FatI CATG 4 cut(s) 79, 214, 623, 894
FbaI TGATCA 1 cut(s) 690
FblI GTMKAC 2 cut(s) 37, 705
Fnu4HI GCNGC 4 cut(s) 84, 128, 442, 883
FokI GGATG 2 cut(s) 89, 307
Fsp4HI GCNGC 4 cut(s) 84, 128, 442, 883
FspBI CTAG 1 cut(s) 219
GlaI GCGC 2 cut(s) 299, 668
GluI GCNGC 4 cut(s) 84, 128, 442, 883
HaeIII GGCC 1 cut(s) 441
HhaI GCGC 2 cut(s) 300, 669
Hin1II CATG 4 cut(s) 83, 218, 627, 898
Hin6I GCGC 2 cut(s) 298, 667
HinP1I GCGC 2 cut(s) 298, 667
HincII GTYRAC 2 cut(s) 38, 583
HindII GTYRAC 2 cut(s) 38, 583
HinfI GANTC 4 cut(s) 34, 150, 413, 848
HpaI GTTAAC 1 cut(s) 583
HphI GGTGA 2 cut(s) 38, 362
Hpy166II GTNNAC 4 cut(s) 38, 232, 583, 706
Hpy188I TCNGA 4 cut(s) 149, 208, 856, 879
Hpy188III TCNNGA 3 cut(s) 466, 598, 911
Hpy8I GTNNAC 4 cut(s) 38, 232, 583, 706
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 3 cut(s) 46, 341, 910
HpyCH4III ACNGT 3 cut(s) 589, 679, 688
HpyCH4IV ACGT 3 cut(s) 283, 766, 779
HpyCH4V TGCA 9 cut(s) 17, 86, 261, 279, 320, 363, 390, 868, 958
HpyF10VI GCNNNNNNNGC 3 cut(s) 542, 637, 891
HpyF3I CTNAG 2 cut(s) 507, 546
HpySE526I ACGT 3 cut(s) 283, 766, 779
Hsp92II CATG 4 cut(s) 83, 218, 627, 898
HspAI GCGC 2 cut(s) 298, 667
Ksp22I TGATCA 1 cut(s) 690
KspAI GTTAAC 1 cut(s) 583
Kzo9I GATC 2 cut(s) 203, 690
LguI GCTCTTC 2 cut(s) 199, 655
Lsp1109I GCAGC 3 cut(s) 70, 114, 894
LweI GCATC 2 cut(s) 285, 967
MaeI CTAG 1 cut(s) 219
MaeII ACGT 3 cut(s) 283, 766, 779
MaeIII GTNAC 1 cut(s) 613
MalI GATC 2 cut(s) 205, 692
MboI GATC 2 cut(s) 203, 690
MboII GAAGA 8 cut(s) 113, 186, 369, 422, 560, 600, 642, 823
MluCI AATT 6 cut(s) 18, 137, 308, 655, 797, 975
MlyI GAGTC 3 cut(s) 43, 407, 857
MmeI TCCRAC 1 cut(s) 517
MnlI CCTC 6 cut(s) 162, 337, 510, 516, 541, 862
MroXI GAANNNNTTC 1 cut(s) 632
MseI TTAA 4 cut(s) 582, 738, 749, 795
MslI CAYNNNNRTG 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 268
MspR9I CCNGG 1 cut(s) 673
Mva1269I GAATGC 1 cut(s) 536
MvaI CCWGG 1 cut(s) 673
MwoI GCNNNNNNNGC 3 cut(s) 542, 637, 891
NdeII GATC 2 cut(s) 203, 690
NlaIII CATG 4 cut(s) 83, 218, 627, 898
NlaIV GGNNCC 1 cut(s) 470
NmuCI GTSAC 1 cut(s) 613
PciSI GCTCTTC 2 cut(s) 199, 655
PctI GAATGC 1 cut(s) 536
PdmI GAANNNNTTC 1 cut(s) 632
PfeI GAWTC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 770
PkrI GCNGC 4 cut(s) 85, 129, 443, 884
PleI GAGTC 3 cut(s) 42, 407, 856
PmaCI CACGTG 1 cut(s) 780
PmlI CACGTG 1 cut(s) 780
PpsI GAGTC 3 cut(s) 42, 407, 856
Ppu21I YACGTR 2 cut(s) 767, 780
Psp6I CCWGG 1 cut(s) 671
PspCI CACGTG 1 cut(s) 780
PspGI CCWGG 1 cut(s) 671
PspN4I GGNNCC 1 cut(s) 470
PstNI CAGNNNCTG 1 cut(s) 617
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 2 cut(s) 272, 622
RsaNI GTAC 2 cut(s) 271, 621
RseI CAYNNNNRTG 1 cut(s) 158
SalI GTCGAC 1 cut(s) 36
SapI GCTCTTC 2 cut(s) 199, 655
SaqAI TTAA 4 cut(s) 582, 738, 749, 795
SatI GCNGC 4 cut(s) 84, 128, 442, 883
Sau3AI GATC 2 cut(s) 203, 690
SchI GAGTC 3 cut(s) 43, 407, 857
ScrFI CCNGG 1 cut(s) 673
SfaNI GCATC 2 cut(s) 285, 967
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
Sse9I AATT 6 cut(s) 18, 137, 308, 655, 797, 975
SsiI CCGC 1 cut(s) 442
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 671
TaaI ACNGT 3 cut(s) 589, 679, 688
TaiI ACGT 3 cut(s) 286, 769, 782
TaqI TCGA 3 cut(s) 37, 202, 597
TasI AATT 6 cut(s) 18, 137, 308, 655, 797, 975
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 4 cut(s) 582, 738, 749, 795
Tru9I TTAA 4 cut(s) 582, 738, 749, 795
TscAI CASTG 3 cut(s) 592, 618, 684
TseFI GTSAC 1 cut(s) 613
TseI GCWGC 3 cut(s) 83, 127, 882
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 5 cut(s) 68, 142, 227, 397, 529
TspRI CASTG 3 cut(s) 592, 618, 684
Van91I CCANNNNNTGG 1 cut(s) 770
XapI RAATTY 4 cut(s) 137, 308, 655, 975
XmiI GTMKAC 2 cut(s) 37, 705
XmnI GAANNNNTTC 1 cut(s) 632
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.