Prupe.6G347200_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0007822
Physical Location & Seq
Reverse (-)
29723600 .. 29727372
3773 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G347200.1

Sequence Viewer

Length: 1200 bp
ATGAAGGGTCAAAAGAGGTCTGCAAATGATATTCATGCTGCATTGACTGATGACATCCTACACGAGATCCTCCTTCGACTGCCAGAGAAATCTGTTTTCAATTTCATACTCGTATCAAAGAGGTGGCTTCGTGTGATATGTAGCTCTTCTTTTCGAAAGGATTACCATGCTCGATGGAGAATAAGTTTTCATCTTTTGGGCTTCTTTGTGTGCAATCATCTATACCTTGGAAGATCTAAACATGGCATATGCCGGCCCCCATCAGAGCGTGCACTTCATTTATTGTCAACTTGTGAGGAAGGCGATAATTTACTGGTTTCTGGGATCCCCAAACAGCTTGGCTATTTCATTGACTCTTCCAATGGCCTTCTTCTTTTTGGCCGCCACCCAATGACATATTCTGTGTGGAACCCAATCACCAAACAGCTATGCCGACTTCCTCAACCTCAGCGGTACTATAAAAGTTTGTGTATTGCATTCTTCAGTGTCACCGAGGAGTGTTTTGAGGAAATCATCCACTACAAGGTTATTCGGGCAAGATGTGACTGCAGACGTGATGAAGTTAATACTGTCTCCATTGAGACTTTCTCTTCAGTGACTGGTACATGGAAACATTATACGCTCACTTGCTCTTCAACATTTGCCTTGCGTCCTTGGGCAGTGGCTACTGTAATTAGTGGTGTCGTATACTGGTTTGCAACCCAGGGAAATCTAGCCATTTATGATCCACGTCTTGGAGATAGGCGTATAGTTTTGCTTAAATTACCAGATGGTACGATTTCTCAAGATTATGATGAGTGTGTTCTTGGGGAGGCCCCAGATGGGCATTTGCAGTATGGTCAGAGCAGCACGTCAGGCATGGAGATATGGGTTCTTGAGAGGGAAGGAAATAGTTTCTCATCAAACGTGCAATCACAGAACAGGTGGAATTTAAGGTACAAACTAAGTTTCAAAGCAATGTGGAAGCAAAATCCAGACTCTGCAAAGAATTCTAAAGAAGCTCAAATATTGTCATTCCTTCCCCAGAATTCTGAATATGTCTTCATAAGAGCTGGATGGAACATATTTCTCTTTCACCTCAAGAGCCGGAGGCTTACACTGATTCCATATCTTGGTCGTGACTCTTCTATTCAATGGGATGACAGTCAAGTAATGCCTTACTTTAGACCTTCTTGGCCGCGCTCCTGTTTATGCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

400

Amino Acids

46.18

Weight (kDa)

9.1

Isoelectric Point (pI)

58.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 734, 1112
AccI GTMKAC 1 cut(s) 687
AccII CGCG 1 cut(s) 1180
AciI CCGC 3 cut(s) 382, 451, 1178
AclWI GGATC 4 cut(s) 61, 319, 332, 719
AcoI YGGCCR 2 cut(s) 379, 1175
AcsI RAATTY 3 cut(s) 928, 988, 1027
AcuI CTGAAG 2 cut(s) 466, 576
AfaI GTAC 4 cut(s) 455, 604, 775, 938
AfiI CCNNNNNNNGG 4 cut(s) 523, 734, 822, 1112
AgsI TTSAA 4 cut(s) 100, 636, 952, 1133
AjiI CACGTC 3 cut(s) 554, 731, 852
AjnI CCWGG 1 cut(s) 702
AjuI GAANNNNNNNTTGG 2 cut(s) 382, 414
AluBI AGCT 5 cut(s) 144, 337, 427, 1001, 1052
AluI AGCT 5 cut(s) 144, 337, 427, 1001, 1052
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 2 cut(s) 575, 577
Alw44I GTGCAC 1 cut(s) 270
AlwI GGATC 4 cut(s) 61, 319, 332, 719
AlwNI CAGNNNCTG 2 cut(s) 599, 980
AoxI GGCC 5 cut(s) 254, 364, 379, 813, 1175
ApaLI GTGCAC 1 cut(s) 270
ApeKI GCWGC 2 cut(s) 38, 846
ApoI RAATTY 3 cut(s) 928, 988, 1027
AspLEI GCGC 1 cut(s) 1182
AspS9I GGNCC 2 cut(s) 255, 814
AsuHPI GGTGA 3 cut(s) 409, 481, 1067
AsuII TTCGAA 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 274
BamHI GGATCC 1 cut(s) 324
BauI CACGAG 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 1033
Bbv12I GWGCWC 1 cut(s) 274
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 2 cut(s) 25, 858
BccI CCATC 5 cut(s) 168, 268, 764, 815, 1050
BciT130I CCWGG 1 cut(s) 704
BcoDI GTCTC 2 cut(s) 575, 577
BfaI CTAG 1 cut(s) 713
BfmI CTRYAG 1 cut(s) 547
BglII AGATCT 1 cut(s) 233
BisI GCNGC 4 cut(s) 39, 382, 847, 1178
BlsI GCNGC 4 cut(s) 40, 383, 848, 1179
Bme1390I CCNGG 1 cut(s) 704
BmgBI CACGTC 3 cut(s) 554, 731, 852
BmgT120I GGNCC 2 cut(s) 255, 814
BmiI GGNNCC 4 cut(s) 257, 326, 410, 816
BmrFI CCNGG 1 cut(s) 704
BpiI GAAGAC 1 cut(s) 1033
BplI GAGNNNNNCTC 2 cut(s) 572, 604
Bpu10I CCTNAGC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 154
BpuEI CTTGAG 3 cut(s) 768, 896, 1064
BsaJI CCNNGG 5 cut(s) 226, 492, 653, 702, 703
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 4 cut(s) 523, 734, 822, 1112
Bse118I RCCGGY 1 cut(s) 252
Bse1I ACTGG 3 cut(s) 318, 604, 695
Bse3DI GCAATG 1 cut(s) 963
BseBI CCWGG 1 cut(s) 704
BseDI CCNNGG 5 cut(s) 226, 492, 653, 702, 703
BseGI GGATG 4 cut(s) 54, 513, 1061, 1144
BseLI CCNNNNNNNGG 4 cut(s) 523, 734, 822, 1112
BseMI GCAATG 1 cut(s) 963
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 3 cut(s) 318, 604, 695
BseRI GAGGAG 1 cut(s) 509
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 2 cut(s) 25, 858
Bsh1236I CGCG 1 cut(s) 1180
BshFI GGCC 5 cut(s) 256, 366, 381, 815, 1177
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 2 cut(s) 253, 1087
BslI CCNNNNNNNGG 4 cut(s) 523, 734, 822, 1112
BsmAI GTCTC 2 cut(s) 575, 577
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 5 cut(s) 256, 366, 381, 815, 1177
Bsp119I TTCGAA 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 4 cut(s) 66, 233, 324, 724
BspACI CCGC 3 cut(s) 382, 451, 1178
BspANI GGCC 5 cut(s) 256, 366, 381, 815, 1177
BspCNI CTCAG 1 cut(s) 460
BspFNI CGCG 1 cut(s) 1180
BspLI GGNNCC 4 cut(s) 257, 326, 410, 816
BspMAI CTGCAG 1 cut(s) 551
BspPI GGATC 4 cut(s) 61, 319, 332, 719
BspQI GCTCTTC 2 cut(s) 151, 637
BspT104I TTCGAA 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 963
BsrFI RCCGGY 1 cut(s) 252
BsrI ACTGG 3 cut(s) 318, 604, 695
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 5 cut(s) 226, 492, 653, 702, 703
BssMI GATC 4 cut(s) 66, 233, 324, 724
BssNAI GTATAC 1 cut(s) 688
BssSI CACGAG 1 cut(s) 62
BssT1I CCWWGG 2 cut(s) 226, 653
Bst1107I GTATAC 1 cut(s) 688
Bst2BI CACGAG 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 3 cut(s) 571, 670, 1145
Bst6I CTCTTC 5 cut(s) 151, 361, 595, 637, 1129
BstBI TTCGAA 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 254, 270
BstDEI CTNAG 2 cut(s) 447, 944
BstF5I GGATG 4 cut(s) 54, 513, 1061, 1144
BstFNI CGCG 1 cut(s) 1180
BstHHI GCGC 1 cut(s) 1182
BstKTI GATC 4 cut(s) 69, 236, 327, 727
BstMAI GTCTC 2 cut(s) 575, 577
BstMBI GATC 4 cut(s) 66, 233, 324, 724
BstMWI GCNNNNNNNGC 1 cut(s) 855
BstNI CCWGG 1 cut(s) 704
BstSCI CCNGG 1 cut(s) 702
BstSFI CTRYAG 1 cut(s) 547
BstSLI GKGCMC 1 cut(s) 274
BstUI CGCG 1 cut(s) 1180
BstV1I GCAGC 2 cut(s) 25, 858
BstV2I GAAGAC 1 cut(s) 1033
BstX2I RGATCY 3 cut(s) 66, 233, 324
BstYI RGATCY 3 cut(s) 66, 233, 324
BstZ17I GTATAC 1 cut(s) 688
BsuRI GGCC 5 cut(s) 256, 366, 381, 815, 1177
BtrI CACGTC 3 cut(s) 554, 731, 852
BtsCI GGATG 4 cut(s) 54, 513, 1061, 1144
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 4 cut(s) 490, 600, 666, 1097
Cac8I GCNNGC 2 cut(s) 254, 270
CaiI CAGNNNCTG 2 cut(s) 599, 980
CfoI GCGC 1 cut(s) 1182
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 2 cut(s) 255, 814
CseI GACGC 1 cut(s) 638
Csp6I GTAC 4 cut(s) 454, 603, 774, 937
CviAII CATG 5 cut(s) 35, 167, 242, 606, 859
CviQI GTAC 4 cut(s) 454, 603, 774, 937
DdeI CTNAG 2 cut(s) 447, 944
DpnI GATC 4 cut(s) 68, 235, 326, 726
DpnII GATC 4 cut(s) 66, 233, 324, 724
EaeI YGGCCR 2 cut(s) 379, 1175
Eam1104I CTCTTC 5 cut(s) 151, 361, 595, 637, 1129
EarI CTCTTC 5 cut(s) 151, 361, 595, 637, 1129
Eco130I CCWWGG 2 cut(s) 226, 653
Eco57I CTGAAG 2 cut(s) 466, 576
EcoO109I RGGNCCY 1 cut(s) 814
EcoRI GAATTC 2 cut(s) 988, 1027
EcoRII CCWGG 1 cut(s) 702
EcoT14I CCWWGG 2 cut(s) 226, 653
ErhI CCWWGG 2 cut(s) 226, 653
FaeI CATG 5 cut(s) 38, 170, 245, 609, 862
FatI CATG 5 cut(s) 34, 166, 241, 605, 858
FauNDI CATATG 1 cut(s) 248
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 4 cut(s) 39, 382, 847, 1178
FokI GGATG 4 cut(s) 41, 500, 1068, 1151
Fsp4HI GCNGC 4 cut(s) 39, 382, 847, 1178
FspBI CTAG 1 cut(s) 713
GlaI GCGC 1 cut(s) 1181
GluI GCNGC 4 cut(s) 39, 382, 847, 1178
HaeIII GGCC 5 cut(s) 256, 366, 381, 815, 1177
HapII CCGG 2 cut(s) 253, 1087
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 1182
Hin1II CATG 5 cut(s) 38, 170, 245, 609, 862
Hin6I GCGC 1 cut(s) 1180
HinP1I GCGC 1 cut(s) 1180
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 4 cut(s) 353, 977, 1102, 1121
HpaII CCGG 2 cut(s) 253, 1087
HphI GGTGA 3 cut(s) 409, 481, 1067
Hpy166II GTNNAC 3 cut(s) 272, 288, 688
Hpy188I TCNGA 3 cut(s) 265, 843, 1033
Hpy188III TCNNGA 5 cut(s) 785, 875, 974, 1081, 1118
Hpy8I GTNNAC 3 cut(s) 272, 288, 688
HpyAV CCTTC 6 cut(s) 83, 293, 377, 878, 1028, 1179
HpyCH4III ACNGT 3 cut(s) 571, 670, 1145
HpyCH4IV ACGT 4 cut(s) 553, 730, 851, 906
HpyF10VI GCNNNNNNNGC 1 cut(s) 855
HpyF3I CTNAG 2 cut(s) 447, 944
HpySE526I ACGT 4 cut(s) 553, 730, 851, 906
Hsp92II CATG 5 cut(s) 38, 170, 245, 609, 862
HspAI GCGC 1 cut(s) 1180
KroI GCCGGC 1 cut(s) 252
KroNI GCCGGC 1 cut(s) 254
Kzo9I GATC 4 cut(s) 66, 233, 324, 724
LguI GCTCTTC 2 cut(s) 151, 637
LmnI GCTCC 1 cut(s) 1187
Lsp1109I GCAGC 2 cut(s) 25, 858
MaeI CTAG 1 cut(s) 713
MaeII ACGT 4 cut(s) 553, 730, 851, 906
MaeIII GTNAC 4 cut(s) 487, 542, 595, 1118
MalI GATC 4 cut(s) 68, 235, 326, 726
MboI GATC 4 cut(s) 66, 233, 324, 724
MboII GAAGA 9 cut(s) 138, 243, 348, 362, 472, 582, 624, 1033, 1116
MflI RGATCY 3 cut(s) 66, 233, 324
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 7 cut(s) 100, 307, 672, 761, 928, 988, 1027
MlyI GAGTC 3 cut(s) 347, 971, 1115
MroNI GCCGGC 1 cut(s) 252
MseI TTAA 3 cut(s) 564, 759, 932
MspA1I CMGCKG 1 cut(s) 451
MspI CCGG 2 cut(s) 253, 1087
MspR9I CCNGG 1 cut(s) 704
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 1 cut(s) 704
MvnI CGCG 1 cut(s) 1180
MwoI GCNNNNNNNGC 1 cut(s) 855
NaeI GCCGGC 1 cut(s) 254
NdeI CATATG 1 cut(s) 248
NdeII GATC 4 cut(s) 66, 233, 324, 724
NgoMIV GCCGGC 1 cut(s) 252
NlaIII CATG 5 cut(s) 38, 170, 245, 609, 862
NlaIV GGNNCC 4 cut(s) 257, 326, 410, 816
NmuCI GTSAC 4 cut(s) 487, 542, 595, 1118
NspV TTCGAA 1 cut(s) 154
PasI CCCWGGG 1 cut(s) 703
PciSI GCTCTTC 2 cut(s) 151, 637
PctI GAATGC 1 cut(s) 476
PdiI GCCGGC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 1102
PflMI CCANNNNNTGG 2 cut(s) 734, 1112
PkrI GCNGC 4 cut(s) 40, 383, 848, 1179
PleI GAGTC 3 cut(s) 347, 971, 1115
PpsI GAGTC 3 cut(s) 347, 971, 1115
Psp6I CCWGG 1 cut(s) 702
PspGI CCWGG 1 cut(s) 702
PspN4I GGNNCC 4 cut(s) 257, 326, 410, 816
PspPI GGNCC 2 cut(s) 255, 814
PstI CTGCAG 1 cut(s) 551
PstNI CAGNNNCTG 2 cut(s) 599, 980
PsuI RGATCY 3 cut(s) 66, 233, 324
RsaI GTAC 4 cut(s) 455, 604, 775, 938
RsaNI GTAC 4 cut(s) 454, 603, 774, 937
SapI GCTCTTC 2 cut(s) 151, 637
SaqAI TTAA 3 cut(s) 564, 759, 932
SatI GCNGC 4 cut(s) 39, 382, 847, 1178
Sau3AI GATC 4 cut(s) 66, 233, 324, 724
Sau96I GGNCC 2 cut(s) 255, 814
SchI GAGTC 3 cut(s) 347, 971, 1115
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 1 cut(s) 274
SfcI CTRYAG 1 cut(s) 547
SfuI TTCGAA 1 cut(s) 154
SmlI CTYRAG 3 cut(s) 783, 875, 1079
SmoI CTYRAG 3 cut(s) 783, 875, 1079
Sse9I AATT 7 cut(s) 100, 307, 672, 761, 928, 988, 1027
SsiI CCGC 3 cut(s) 382, 451, 1178
SspI AATATT 1 cut(s) 1008
SspMI CTAG 1 cut(s) 713
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 2 cut(s) 226, 653
TaaI ACNGT 3 cut(s) 571, 670, 1145
TaiI ACGT 4 cut(s) 556, 733, 854, 909
TaqI TCGA 3 cut(s) 76, 154, 172
TasI AATT 7 cut(s) 100, 307, 672, 761, 928, 988, 1027
TauI GCSGC 2 cut(s) 384, 1180
TfiI GAWTC 1 cut(s) 1102
Tru1I TTAA 3 cut(s) 564, 759, 932
Tru9I TTAA 3 cut(s) 564, 759, 932
TscAI CASTG 4 cut(s) 490, 600, 666, 1104
TseFI GTSAC 4 cut(s) 487, 542, 595, 1118
TseI GCWGC 2 cut(s) 38, 846
Tsp45I GTSAC 4 cut(s) 487, 542, 595, 1118
TspDTI ATGAA 8 cut(s) 17, 23, 94, 179, 266, 337, 573, 1033
TspRI CASTG 4 cut(s) 490, 600, 666, 1104
Van91I CCANNNNNTGG 2 cut(s) 734, 1112
VneI GTGCAC 1 cut(s) 270
XapI RAATTY 3 cut(s) 928, 988, 1027
XmiI GTMKAC 1 cut(s) 687
XspI CTAG 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.