Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012066

Physical Location & Seq

Genomic Coordinates Forward (+)

1279577 .. 1281746

Gene Structure 2170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCAGCAACCTTACCTCTATCTCCGATCAATCATCAGTTGTGTCGGTTCGGGAACAACTCTTTGACGACTCACCGGTTCTGTTCTCCTGGCTTCTTGATTTCTTCTCCTTGTTTCATTGGTTTGACCGGAATGGGCTCTGCTACTCAGTTACGTGCTCGTCGTTCTCTGATCTCTTCAGCAGTTGCGACGAATTCGCTGTTGCATGACGTCGGAGCCACCGTGGCAGTGCTTGGTGGAGCATACGCGCTTGTCTTAAGCTTCGAGAGTCTCACCAAGCGAAACGTCATTCAACAGAGTTTGAGCAGAAAGCTTGTGCATATACTCTCAGGTCTGCTTTTCGTACTTGCGTGGCCAATCTTCAGCGGATCGACCGAGGCTCGATACTTTGCTGCTTTTGTTCCGTTAGTGAATGGCTTAAGGCTTGTTATTAACGGACTATCCATTTCCCCAAATTCGATGCTAATCAAATCCGTCACAAGAGAAGGGAGAGCAGAAGAGTTGCTTAAAGGTCCTTTGTTCTACGTTCTAGCTCTTCTTTTCTCTGCGGTTTTCTTCTGGAGAGAGTCTCCTATCGGTATGATCTCGTTAGCAATGATGTGTGGTGGCGATGGAATAGCTGATATAATGGGACGTAAGTTTGGGTCAACTAAGATACCTTACAACCCAAGAAAGAGTTGGGCAGGAAGCATCTCCATGTTCATCTTCGGCTTCTTCATCTCCATCGCATTACTTTACTATTACTCAAGCCTTGGGTACCTTCACATGAACTGGGAAACGACCTTGCAGAGAGTAGCAATGGTCTCAATGGTCGCCACGGTAGTCGAGTCGCTACCCATCACCGATCAATTAGACGACAATATTTCGGTTCCTCTGGCTACTATTTTAGCTGCTTATTTAAGTTTCGGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006766 GO:0006775 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0010189 GO:0010276 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

33.09

Weight (kDa)

9.48

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04490 AT5G04490
fragaria_vesca	FvH4_7g06990 FvH4_7g06990 FvH4_7g06990
malus_domestica	MD07G1076000.v1.1
prunus_persica	Prupe.2G096700_v2.0.a1 Prupe.2G096700_v2.0.a1
pyrus_communis	pycom07g05990
rosa_chinensis	RchiOBHm_Chr1g0336921
rosa_laevigata	RLG00000029322
rosa_roxburghii	Rroxscaffold_4G00315190
rosa_rugosa	Rorug01G0128900 Rorug01G0128900
rosa_samantha	Rh1AG149900 Rh1CG141100 Rh1DG157000
rosa_wichuraiana	Rw1G012110 Rw1G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	213
Acc65I	GGTACC	1 cut(s)	756
AccB1I	GGYRCC	1 cut(s)	756
AccII	CGCG	1 cut(s)	248
AciI	CCGC	2 cut(s)	366, 548
AclWI	GGATC	1 cut(s)	376
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	193, 454
AcuI	CTGAAG	2 cut(s)	162, 346
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	2 cut(s)	345, 758
AflII	CTTAAG	2 cut(s)	256, 418
AgeI	ACCGGT	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	5 cut(s)	261, 313, 533, 620, 890
AluI	AGCT	5 cut(s)	261, 313, 533, 620, 890
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	3 cut(s)	275, 573, 808
AlwI	GGATC	1 cut(s)	376
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	3 cut(s)	5, 392, 890
ApoI	RAATTY	2 cut(s)	193, 454
AsiGI	ACCGGT	1 cut(s)	75
Asp718I	GGTACC	1 cut(s)	756
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	3 cut(s)	65, 265, 832
AvaII	GGWCC	1 cut(s)	512
BalI	TGGCCA	1 cut(s)	355
BanI	GGYRCC	1 cut(s)	756
BanII	GRGCYC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	3 cut(s)	17, 379, 877
BccI	CCATC	3 cut(s)	605, 731, 845
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	3 cut(s)	275, 573, 808
BfaI	CTAG	1 cut(s)	530
BfrI	CTTAAG	2 cut(s)	256, 418
BglI	GCCNNNNNGGC	1 cut(s)	224
BisI	GCNGC	3 cut(s)	6, 393, 891
BlsI	GCNGC	3 cut(s)	7, 394, 892
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	3 cut(s)	217, 758, 870
BmrFI	CCNGG	1 cut(s)	90
BmrI	ACTGGG	1 cut(s)	781
BmsI	GCATC	2 cut(s)	450, 699
BmuI	ACTGGG	1 cut(s)	781
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
BpmI	CTGGAG	1 cut(s)	580
BpuEI	CTTGAG	1 cut(s)	730
BsaAI	YACGTR	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	464
BsaHI	GRCGYC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	808
BsaJI	CCNNGG	4 cut(s)	222, 375, 751, 816
BsaWI	WCCGGW	2 cut(s)	75, 128
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	776
Bse3DI	GCAATG	2 cut(s)	600, 804
Bse8I	GATNNNNATC	1 cut(s)	464
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	4 cut(s)	222, 375, 751, 816
BseJI	GATNNNNATC	1 cut(s)	464
BseMI	GCAATG	2 cut(s)	600, 804
BseMII	CTCAG	2 cut(s)	161, 342
BseNI	ACTGG	1 cut(s)	776
BseXI	GCAGC	3 cut(s)	17, 379, 877
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	355
BshNI	GGYRCC	1 cut(s)	756
BshTI	ACCGGT	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	76, 129
BslFI	GGGAC	1 cut(s)	645
BsmAI	GTCTC	3 cut(s)	275, 573, 808
BsmFI	GGGAC	1 cut(s)	645
BsnI	GGCC	1 cut(s)	355
Bso31I	GGTCTC	1 cut(s)	808
Bsp1286I	GDGCHC	2 cut(s)	140, 160
Bsp143I	GATC	5 cut(s)	27, 171, 368, 582, 844
BspACI	CCGC	2 cut(s)	366, 548
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	2 cut(s)	160, 341
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	3 cut(s)	217, 758, 870
BspPI	GGATC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	756
BspTI	CTTAAG	2 cut(s)	256, 418
BspTNI	GGTCTC	1 cut(s)	808
BsrDI	GCAATG	2 cut(s)	600, 804
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	776
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	4 cut(s)	222, 375, 751, 816
BssMI	GATC	5 cut(s)	27, 171, 368, 582, 844
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	751
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	223, 820
Bst6I	CTCTTC	3 cut(s)	181, 492, 540
BstACI	GRCGYC	1 cut(s)	210
BstAFI	CTTAAG	2 cut(s)	256, 418
BstBAI	YACGTR	1 cut(s)	155
BstDEI	CTNAG	3 cut(s)	147, 328, 651
BstDSI	CCRYGG	2 cut(s)	222, 816
BstFNI	CGCG	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	5 cut(s)	30, 174, 371, 585, 847
BstMAI	GTCTC	3 cut(s)	275, 573, 808
BstMBI	GATC	5 cut(s)	27, 171, 368, 582, 844
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	3 cut(s)	17, 379, 877
BsuRI	GGCC	1 cut(s)	355
BtgI	CCRYGG	2 cut(s)	222, 816
BtgZI	GCGATG	2 cut(s)	624, 709
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	234
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	344, 757
CspAI	ACCGGT	1 cut(s)	75
CviAII	CATG	3 cut(s)	206, 697, 766
CviQI	GTAC	2 cut(s)	344, 757
DdeI	CTNAG	3 cut(s)	147, 328, 651
DpnI	GATC	5 cut(s)	29, 173, 370, 584, 846
DpnII	GATC	5 cut(s)	27, 171, 368, 582, 844
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	3 cut(s)	181, 492, 540
EarI	CTCTTC	3 cut(s)	181, 492, 540
Eco130I	CCWWGG	1 cut(s)	751
Eco24I	GRGCYC	1 cut(s)	140
Eco31I	GGTCTC	1 cut(s)	808
Eco47I	GGWCC	1 cut(s)	512
Eco57I	CTGAAG	2 cut(s)	162, 346
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRI	GAATTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	751
FaeI	CATG	3 cut(s)	209, 700, 769
FaiI	YATR	8 cut(s)	207, 244, 321, 323, 581, 626, 698, 767
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	3 cut(s)	205, 696, 765
Fnu4HI	GCNGC	3 cut(s)	6, 393, 891
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	3 cut(s)	6, 393, 891
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	3 cut(s)	6, 393, 891
GsuI	CTGGAG	1 cut(s)	580
HaeIII	GGCC	1 cut(s)	355
HapII	CCGG	2 cut(s)	76, 129
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	3 cut(s)	209, 700, 769
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HindIII	AAGCTT	2 cut(s)	259, 311
HinfI	GANTC	4 cut(s)	70, 268, 566, 827
HpaII	CCGG	2 cut(s)	76, 129
HphI	GGTGA	3 cut(s)	65, 265, 832
Hpy166II	GTNNAC	1 cut(s)	648
Hpy188I	TCNGA	4 cut(s)	27, 171, 215, 908
Hpy188III	TCNNGA	4 cut(s)	52, 97, 265, 559
Hpy8I	GTNNAC	1 cut(s)	648
Hpy99I	CGWCG	3 cut(s)	165, 193, 215
HpyAV	CCTTC	2 cut(s)	479, 770
HpyCH4III	ACNGT	2 cut(s)	223, 820
HpyCH4IV	ACGT	5 cut(s)	154, 210, 285, 525, 634
HpyCH4V	TGCA	3 cut(s)	205, 319, 787
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	3 cut(s)	147, 328, 651
HpySE526I	ACGT	5 cut(s)	154, 210, 285, 525, 634
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	209, 700, 769
HspAI	GCGC	1 cut(s)	248
KpnI	GGTACC	1 cut(s)	760
Kzo9I	GATC	5 cut(s)	27, 171, 368, 582, 844
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	2 cut(s)	215, 239
LpnPI	CCDG	9 cut(s)	75, 89, 102, 142, 315, 544, 669, 757, 860
Lsp1109I	GCAGC	3 cut(s)	17, 379, 877
LweI	GCATC	2 cut(s)	450, 699
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	5 cut(s)	154, 210, 285, 525, 634
MaeIII	GTNAC	2 cut(s)	150, 475
MalI	GATC	5 cut(s)	29, 173, 370, 584, 846
MboI	GATC	5 cut(s)	27, 171, 368, 582, 844
MboII	GAAGA	8 cut(s)	96, 168, 352, 509, 527, 547, 697, 706
MhlI	GDGCHC	2 cut(s)	140, 160
MlsI	TGGCCA	1 cut(s)	355
MluCI	AATT	3 cut(s)	193, 454, 848
MluNI	TGGCCA	1 cut(s)	355
MlyI	GAGTC	4 cut(s)	64, 277, 575, 836
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	3 cut(s)	27, 370, 882
Mox20I	TGGCCA	1 cut(s)	355
MscI	TGGCCA	1 cut(s)	355
MseI	TTAA	5 cut(s)	257, 419, 432, 507, 899
MslI	CAYNNNNRTG	1 cut(s)	695
Msp20I	TGGCCA	1 cut(s)	355
MspA1I	CMGCKG	1 cut(s)	366
MspCI	CTTAAG	2 cut(s)	256, 418
MspI	CCGG	2 cut(s)	76, 129
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	5 cut(s)	27, 171, 368, 582, 844
NlaIII	CATG	3 cut(s)	209, 700, 769
NlaIV	GGNNCC	3 cut(s)	217, 758, 870
NmuCI	GTSAC	1 cut(s)	475
PciSI	GCTCTTC	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	2 cut(s)	160, 219
PinAI	ACCGGT	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	7, 394, 892
PleI	GAGTC	4 cut(s)	64, 276, 574, 835
PpsI	GAGTC	4 cut(s)	64, 276, 574, 835
Ppu21I	YACGTR	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	3 cut(s)	217, 758, 870
PspPI	GGNCC	1 cut(s)	512
PspPPI	RGGWCCY	1 cut(s)	512
RsaI	GTAC	2 cut(s)	345, 758
RsaNI	GTAC	2 cut(s)	344, 757
RseI	CAYNNNNRTG	1 cut(s)	695
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	5 cut(s)	257, 419, 432, 507, 899
SatI	GCNGC	3 cut(s)	6, 393, 891
Sau3AI	GATC	5 cut(s)	27, 171, 368, 582, 844
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	4 cut(s)	64, 277, 575, 836
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	140, 160
SfaNI	GCATC	2 cut(s)	450, 699
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	3 cut(s)	256, 418, 745
SmoI	CTYRAG	3 cut(s)	256, 418, 745
Sse9I	AATT	3 cut(s)	193, 454, 848
SsiI	CCGC	2 cut(s)	366, 548
SspI	AATATT	1 cut(s)	862
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	751
TaaI	ACNGT	2 cut(s)	223, 820
TaiI	ACGT	5 cut(s)	157, 213, 288, 528, 637
TaqI	TCGA	5 cut(s)	264, 371, 382, 458, 825
TaqII	GACCGA	1 cut(s)	389
TasI	AATT	3 cut(s)	193, 454, 848
Tru1I	TTAA	5 cut(s)	257, 419, 432, 507, 899
Tru9I	TTAA	5 cut(s)	257, 419, 432, 507, 899
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	3 cut(s)	5, 392, 890
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	4 cut(s)	106, 691, 706, 782
TspGWI	ACGGA	3 cut(s)	393, 450, 463
TspRI	CASTG	1 cut(s)	234
Vha464I	CTTAAG	2 cut(s)	256, 418
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	2 cut(s)	193, 454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	675
XspI	CTAG	1 cut(s)	530
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.