Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0012066

Physical Location & Seq

Genomic Coordinates Forward (+)

5294730 .. 5297391

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05990.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGACGAATCTCTTATCCTTCACCCCAACCACTCCTCTTTTCCGCCACCTCTCCGTTTTCTCTGTCGTGCGCCGTCGCCACAACCCCACCACCCTCAAGTCTCCACCACATACCCTCTCACAGTCACCTCTCCACGTCCTCTACCGTGCGCCGCACCCTCCCCCACGCCCCTCCCGCTCCGTGTCCGCTCTACCCGCCCCCGCCGATGGCCTCATGCAGGACGCCGGAGCCACCGCCGTCGTAATCGCTGGCGCCTACGGCCTCGTCCTCTGCTTCGATAATCTCACGCAGCGAAATCTTCTCCGACAGAATTTAAGCAGAAAATTGGTGCATATATTATCTGGGATATTCTTCATGCTTTCCTGGCCAATTTTCAGCACCTCAACCGATGCTCGTTACTTTGCCTCTGTGGTTCCCCTTGTCAATTGCTTGAGGCTTCTTCTTCATGGCTTCTCCTTGGTCCCCAATGAAGGACTCGTCAAATCTGTCACGAGAGAAGGAAACCCAAAGGAGTTGCTTAGAGGTCCTTTGTATTATGTTCTCATATTGATCTTATGTGCTCTTGTGTTTTGGCGTGAGTCTCCCGTTGGACTGATCTCGTTGGCAATGATGTGCGGCGGGGATGGTGTTGCTGATATCATGGGAAGAAAGTTTGGGTCGGTAAAGATCCCTTATAATCCAAAAAAGAGTTGGGCTGGTAGCATATCGATGTTTCTTTTTGGGTTCTTGATTTCCATGGGGATGCTCTATTATTACTCCTTTCTGGGATATTTCGAACTGAATTGGATCCAGACGGCTGAAAAGGTAGCGTTCGTTGCTTTGGTGGCAACACTTGTGGAGTCTCTTCCAATTACAGAGGTATTAGATGACAACATATCTGTTCCATTGGCAAGCATGGCAGCAGCATATTTGAGTTTCTCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006766 GO:0006775 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0010189 GO:0010276 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

33.95

Weight (kDa)

9.51

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04490 AT5G04490
fragaria_vesca	FvH4_7g06990 FvH4_7g06990 FvH4_7g06990
malus_domestica	MD07G1076000.v1.1
prunus_persica	Prupe.2G096700_v2.0.a1 Prupe.2G096700_v2.0.a1
pyrus_communis	pycom07g05990
rosa_chinensis	RchiOBHm_Chr1g0336921
rosa_laevigata	RLG00000029322
rosa_roxburghii	Rroxscaffold_4G00315190
rosa_rugosa	Rorug01G0128900 Rorug01G0128900
rosa_samantha	Rh1AG149900 Rh1CG141100 Rh1DG157000
rosa_wichuraiana	Rw1G012110 Rw1G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	675
AccB1I	GGYRCC	1 cut(s)	251
AccBSI	CCGCTC	2 cut(s)	177, 188
AciI	CCGC	9 cut(s)	43, 152, 175, 186, 195, 201, 234, 615, 618
AclWI	GGATC	3 cut(s)	661, 781, 794
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	310
AcyI	GRCGYC	2 cut(s)	222, 252
AfiI	CCNNNNNNNGG	3 cut(s)	206, 217, 470
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	362
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	3 cut(s)	105, 585, 846
AlwI	GGATC	3 cut(s)	661, 781, 794
AoxI	GGCC	3 cut(s)	208, 259, 365
ApeKI	GCWGC	3 cut(s)	289, 899, 902
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	3 cut(s)	72, 151, 254
AspS9I	GGNCC	2 cut(s)	460, 524
AsuHPI	GGTGA	2 cut(s)	13, 117
AsuII	TTCGAA	1 cut(s)	774
AvaII	GGWCC	2 cut(s)	460, 524
BalI	TGGCCA	1 cut(s)	367
BamHI	GGATCC	1 cut(s)	786
BanI	GGYRCC	1 cut(s)	251
BauI	CACGAG	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	3 cut(s)	301, 911, 914
BccI	CCATC	2 cut(s)	200, 617
BceAI	ACGGC	4 cut(s)	57, 221, 274, 810
BciT130I	CCWGG	1 cut(s)	364
BcoDI	GTCTC	3 cut(s)	105, 585, 846
BfoI	RGCGCY	1 cut(s)	255
BisI	GCNGC	5 cut(s)	152, 290, 616, 900, 903
BlsI	GCNGC	5 cut(s)	153, 291, 617, 901, 904
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	2 cut(s)	460, 524
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	460, 524
BmiI	GGNNCC	5 cut(s)	229, 253, 414, 462, 788
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	2 cut(s)	379, 732
Bpu14I	TTCGAA	1 cut(s)	774
BpuEI	CTTGAG	2 cut(s)	80, 451
Bsa29I	ATCGAT	1 cut(s)	707
BsaHI	GRCGYC	2 cut(s)	222, 252
BsaJI	CCNNGG	2 cut(s)	456, 735
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 217, 470
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	364
BseCI	ATCGAT	1 cut(s)	707
BseDI	CCNNGG	2 cut(s)	456, 735
BseGI	GGATG	2 cut(s)	628, 747
BseLI	CCNNNNNNNGG	3 cut(s)	206, 217, 470
BseMI	GCAATG	1 cut(s)	612
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	301, 911, 914
BshFI	GGCC	3 cut(s)	210, 261, 367
BshNI	GGYRCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	707
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	3 cut(s)	206, 217, 470
BsmAI	GTCTC	3 cut(s)	105, 585, 846
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	3 cut(s)	210, 261, 367
Bsp119I	TTCGAA	1 cut(s)	774
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	4 cut(s)	549, 594, 666, 786
Bsp19I	CCATGG	1 cut(s)	735
BspACI	CCGC	9 cut(s)	43, 152, 175, 186, 195, 201, 234, 615, 618
BspANI	GGCC	3 cut(s)	210, 261, 367
BspDI	ATCGAT	1 cut(s)	707
BspLI	GGNNCC	5 cut(s)	229, 253, 414, 462, 788
BspPI	GGATC	3 cut(s)	661, 781, 794
BspT104I	TTCGAA	1 cut(s)	774
BspT107I	GGYRCC	1 cut(s)	251
BsrBI	CCGCTC	2 cut(s)	177, 188
BsrDI	GCAATG	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	456, 735
BssMI	GATC	4 cut(s)	549, 594, 666, 786
BssNI	GRCGYC	2 cut(s)	222, 252
BssSI	CACGAG	1 cut(s)	490
BssT1I	CCWWGG	2 cut(s)	456, 735
Bst2BI	CACGAG	1 cut(s)	490
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	123, 146
Bst6I	CTCTTC	1 cut(s)	849
BstACI	GRCGYC	2 cut(s)	222, 252
BstBI	TTCGAA	1 cut(s)	774
BstC8I	GCNNGC	2 cut(s)	250, 892
BstDEI	CTNAG	1 cut(s)	518
BstDSI	CCRYGG	1 cut(s)	735
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstF5I	GGATG	2 cut(s)	628, 747
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	3 cut(s)	72, 151, 254
BstKTI	GATC	4 cut(s)	552, 597, 669, 789
BstMAI	GTCTC	3 cut(s)	105, 585, 846
BstMBI	GATC	4 cut(s)	549, 594, 666, 786
BstMWI	GCNNNNNNNGC	7 cut(s)	174, 194, 258, 364, 815, 824, 896
BstNI	CCWGG	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	362
BstV1I	GCAGC	3 cut(s)	301, 911, 914
BstX2I	RGATCY	2 cut(s)	666, 786
BstYI	RGATCY	2 cut(s)	666, 786
Bsu15I	ATCGAT	1 cut(s)	707
BsuRI	GGCC	3 cut(s)	210, 261, 367
BsuTUI	ATCGAT	1 cut(s)	707
BtgI	CCRYGG	1 cut(s)	735
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	628, 747
Cac8I	GCNNGC	2 cut(s)	250, 892
CfoI	GCGC	3 cut(s)	72, 151, 254
Cfr13I	GGNCC	2 cut(s)	460, 524
ClaI	ATCGAT	1 cut(s)	707
CseI	GACGC	1 cut(s)	230
CspCI	CAANNNNNGTGG	2 cut(s)	816, 851
CviAII	CATG	6 cut(s)	214, 355, 446, 640, 736, 895
CviJI	RGCY	8 cut(s)	210, 230, 261, 367, 436, 450, 695, 797
CviKI_1	RGCY	8 cut(s)	210, 230, 261, 367, 436, 450, 695, 797
DdeI	CTNAG	1 cut(s)	518
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	4 cut(s)	551, 596, 668, 788
DpnII	GATC	4 cut(s)	549, 594, 666, 786
EaeI	YGGCCR	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
EciI	GGCGGA	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	456, 735
Eco32I	GATATC	1 cut(s)	637
Eco47I	GGWCC	2 cut(s)	460, 524
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	2 cut(s)	456, 735
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
ErhI	CCWWGG	2 cut(s)	456, 735
FaeI	CATG	6 cut(s)	217, 358, 449, 643, 739, 898
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	6 cut(s)	213, 354, 445, 639, 735, 894
FauI	CCCGC	4 cut(s)	182, 202, 208, 611
Fnu4HI	GCNGC	5 cut(s)	152, 290, 616, 900, 903
FokI	GGATG	2 cut(s)	635, 754
Fsp4HI	GCNGC	5 cut(s)	152, 290, 616, 900, 903
GlaI	GCGC	3 cut(s)	71, 150, 253
GluI	GCNGC	5 cut(s)	152, 290, 616, 900, 903
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	210, 261, 367
HapII	CCGG	1 cut(s)	225
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	3 cut(s)	72, 151, 254
Hin1I	GRCGYC	2 cut(s)	222, 252
Hin1II	CATG	6 cut(s)	217, 358, 449, 643, 739, 898
Hin6I	GCGC	3 cut(s)	70, 149, 252
HinP1I	GCGC	3 cut(s)	70, 149, 252
HinfI	GANTC	4 cut(s)	7, 474, 578, 839
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	2 cut(s)	13, 117
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	3 cut(s)	490, 727, 790
Hpy99I	CGWCG	2 cut(s)	78, 242
HpyAV	CCTTC	3 cut(s)	28, 464, 491
HpyCH4III	ACNGT	2 cut(s)	123, 146
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	217, 331
HpyF10VI	GCNNNNNNNGC	7 cut(s)	174, 194, 258, 364, 815, 824, 896
HpyF3I	CTNAG	1 cut(s)	518
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	2 cut(s)	222, 252
Hsp92II	CATG	6 cut(s)	217, 358, 449, 643, 739, 898
HspAI	GCGC	3 cut(s)	70, 149, 252
KasI	GGCGCC	1 cut(s)	251
Kzo9I	GATC	4 cut(s)	549, 594, 666, 786
LmnI	GCTCC	2 cut(s)	182, 227
LpnPI	CCDG	9 cut(s)	203, 234, 238, 327, 349, 376, 681, 749, 803
Lsp1109I	GCAGC	3 cut(s)	301, 911, 914
LweI	GCATC	2 cut(s)	379, 732
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	3 cut(s)	123, 395, 487
MalI	GATC	4 cut(s)	551, 596, 668, 788
MbiI	CCGCTC	2 cut(s)	177, 188
MboI	GATC	4 cut(s)	549, 594, 666, 786
MboII	GAAGA	6 cut(s)	290, 343, 431, 434, 657, 836
MfeI	CAATTG	1 cut(s)	424
MflI	RGATCY	2 cut(s)	666, 786
MhlI	GDGCHC	1 cut(s)	562
MlsI	TGGCCA	1 cut(s)	367
MluCI	AATT	6 cut(s)	310, 323, 369, 424, 781, 849
MluNI	TGGCCA	1 cut(s)	367
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	3 cut(s)	468, 587, 848
MmeI	TCCRAC	2 cut(s)	328, 568
Mox20I	TGGCCA	1 cut(s)	367
MscI	TGGCCA	1 cut(s)	367
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	2 cut(s)	707, 740
Msp20I	TGGCCA	1 cut(s)	367
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	364
MunI	CAATTG	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	7 cut(s)	174, 194, 258, 364, 815, 824, 896
NarI	GGCGCC	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	735
NdeII	GATC	4 cut(s)	549, 594, 666, 786
NlaIII	CATG	6 cut(s)	217, 358, 449, 643, 739, 898
NlaIV	GGNNCC	5 cut(s)	229, 253, 414, 462, 788
NmuCI	GTSAC	2 cut(s)	123, 487
NspV	TTCGAA	1 cut(s)	774
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	5 cut(s)	153, 291, 617, 901, 904
PleI	GAGTC	3 cut(s)	468, 586, 847
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	3 cut(s)	468, 586, 847
PpuMI	RGGWCCY	1 cut(s)	524
PsiI	TTATAA	1 cut(s)	675
Psp5II	RGGWCCY	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	5 cut(s)	229, 253, 414, 462, 788
PspPI	GGNCC	2 cut(s)	460, 524
PspPPI	RGGWCCY	1 cut(s)	524
PsuI	RGATCY	2 cut(s)	666, 786
RseI	CAYNNNNRTG	2 cut(s)	707, 740
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	5 cut(s)	152, 290, 616, 900, 903
Sau3AI	GATC	4 cut(s)	549, 594, 666, 786
Sau96I	GGNCC	2 cut(s)	460, 524
SchI	GAGTC	3 cut(s)	468, 587, 848
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	562
SetI	ASST	7 cut(s)	51, 130, 138, 383, 526, 807, 861
SfaNI	GCATC	2 cut(s)	379, 732
SfoI	GGCGCC	1 cut(s)	253
SfuI	TTCGAA	1 cut(s)	774
SinI	GGWCC	2 cut(s)	460, 524
SmiMI	CAYNNNNRTG	2 cut(s)	707, 740
SmlI	CTYRAG	2 cut(s)	95, 430
SmoI	CTYRAG	2 cut(s)	95, 430
Sse9I	AATT	6 cut(s)	310, 323, 369, 424, 781, 849
SsiI	CCGC	9 cut(s)	43, 152, 175, 186, 195, 201, 234, 615, 618
SspDI	GGCGCC	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	2 cut(s)	456, 735
TaaI	ACNGT	2 cut(s)	123, 146
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	276, 707, 774
TasI	AATT	6 cut(s)	310, 323, 369, 424, 781, 849
TauI	GCSGC	2 cut(s)	154, 618
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TseFI	GTSAC	2 cut(s)	123, 487
TseI	GCWGC	3 cut(s)	289, 899, 902
Tsp45I	GTSAC	2 cut(s)	123, 487
TspDTI	ATGAA	3 cut(s)	343, 434, 483
TspGWI	ACGGA	2 cut(s)	43, 169
VpaK11BI	GGWCC	2 cut(s)	460, 524
XagI	CCTNNNNNAGG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.