Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0012066

Physical Location & Seq

Genomic Coordinates Forward (+)

7246427 .. 7248645

Gene Structure 2219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1076000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGACGGCTAATTTAAGCAGAAAATTGGTGCATATATTATCTGGGATATTCTTCATGCTTTCCTGGCCAATTTTCAGCACCTCAACCGATGCTCGTTACTTTGCCTCTGTGGTTCCCCTTGTCAATTGCTTGAGGCTTCTTCTTCACGGCTTCTCCTTGGTCACCAATGAAGGACTCGTCAAATCTGTCACGAGAGAAGGAAATCCAAAGGAGTTGCTTCGAGGTCCTTTGTATTACGTTCTCATATTGATCTTATGTGCTCTTGTGTTTTGGCGCGAGTCTCCCGTTGGACTGATCTCCTTGGCAATGATGTGCGGCGGGGATGGTGTTGCTGATATCATGGGGAGAAAGTTTGGGTCGATAAAGATCCCTTATAATCCAAAAAAGAGTTGGGCTGGTAGCATATCGATGTTTCTTTTTGGGTTCTTGATTTCCATGGGGATGCTCTATTATTACTCCTTTCTGGGATATTTCGAACTGAATTGGATCCAGACAGCTGAAAAGGTAGCGTTCGTTGCTTTGGTGGCAACACTTGTGGAGTCCCTCCCAATTACAGAGGTATTAGATGACAACGTATCTGTTCCATTGGCAAGCATGGCGGCTGCATATTTGAGTTTCTCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006766 GO:0006775 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0010189 GO:0010276 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.02

Weight (kDa)

8.41

Isoelectric Point (pI)

21.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04490 AT5G04490
fragaria_vesca	FvH4_7g06990 FvH4_7g06990 FvH4_7g06990
malus_domestica	MD07G1076000.v1.1
prunus_persica	Prupe.2G096700_v2.0.a1 Prupe.2G096700_v2.0.a1
pyrus_communis	pycom07g05990
rosa_chinensis	RchiOBHm_Chr1g0336921
rosa_laevigata	RLG00000029322
rosa_roxburghii	Rroxscaffold_4G00315190
rosa_rugosa	Rorug01G0128900 Rorug01G0128900
rosa_samantha	Rh1AG149900 Rh1CG141100 Rh1DG157000
rosa_wichuraiana	Rw1G012110 Rw1G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccII	CGCG	1 cut(s)	276
AciI	CCGC	3 cut(s)	315, 318, 599
AclWI	GGATC	3 cut(s)	361, 481, 494
AcoI	YGGCCR	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	1 cut(s)	497
AluI	AGCT	1 cut(s)	497
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	3 cut(s)	361, 481, 494
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	154
AsuII	TTCGAA	1 cut(s)	474
AvaII	GGWCC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	486
BauI	CACGAG	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	2 cut(s)	21, 163
BciT130I	CCWGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	285
BisI	GCNGC	3 cut(s)	316, 600, 603
BlsI	GCNGC	3 cut(s)	317, 601, 604
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	114, 488
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	79, 432
Bpu14I	TTCGAA	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	151
Bsa29I	ATCGAT	1 cut(s)	407
BsaBI	GATNNNNATC	1 cut(s)	365
BsaJI	CCNNGG	3 cut(s)	156, 300, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bse3DI	GCAATG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	3 cut(s)	156, 300, 435
BseGI	GGATG	2 cut(s)	328, 447
BseJI	GATNNNNATC	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	312
BseXI	GCAGC	1 cut(s)	589
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	67
BshVI	ATCGAT	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	526
BsnI	GGCC	1 cut(s)	67
Bsp119I	TTCGAA	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	4 cut(s)	249, 294, 366, 486
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	3 cut(s)	315, 318, 599
BspANI	GGCC	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	407
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	114, 488
BspPI	GGATC	3 cut(s)	361, 481, 494
BspT104I	TTCGAA	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	312
BssECI	CCNNGG	3 cut(s)	156, 300, 435
BssMI	GATC	4 cut(s)	249, 294, 366, 486
BssSI	CACGAG	1 cut(s)	190
BssT1I	CCWWGG	3 cut(s)	156, 300, 435
Bst2BI	CACGAG	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	592
BstDSI	CCRYGG	1 cut(s)	435
BstEII	GGTNACC	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	328, 447
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	4 cut(s)	252, 297, 369, 489
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	4 cut(s)	249, 294, 366, 486
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 515, 524, 596
BstNI	CCWGG	1 cut(s)	64
BstPI	GGTNACC	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	62
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	589
BstX2I	RGATCY	2 cut(s)	366, 486
BstYI	RGATCY	2 cut(s)	366, 486
Bsu15I	ATCGAT	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	67
BsuTUI	ATCGAT	1 cut(s)	407
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	328, 447
Cac8I	GCNNGC	1 cut(s)	592
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	224
ClaI	ATCGAT	1 cut(s)	407
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviAII	CATG	4 cut(s)	55, 340, 436, 595
CviJI	RGCY	7 cut(s)	8, 67, 136, 150, 395, 497, 602
CviKI_1	RGCY	7 cut(s)	8, 67, 136, 150, 395, 497, 602
DpnI	GATC	4 cut(s)	251, 296, 368, 488
DpnII	GATC	4 cut(s)	249, 294, 366, 486
EaeI	YGGCCR	1 cut(s)	65
Eco130I	CCWWGG	3 cut(s)	156, 300, 435
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	224
Eco91I	GGTNACC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	3 cut(s)	156, 300, 435
ErhI	CCWWGG	3 cut(s)	156, 300, 435
FaeI	CATG	4 cut(s)	58, 343, 439, 598
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	4 cut(s)	54, 339, 435, 594
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	3 cut(s)	316, 600, 603
FokI	GGATG	2 cut(s)	335, 454
Fsp4HI	GCNGC	3 cut(s)	316, 600, 603
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	3 cut(s)	316, 600, 603
HaeIII	GGCC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	58, 343, 439, 598
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	3 cut(s)	174, 278, 539
HphI	GGTGA	1 cut(s)	154
Hpy188III	TCNNGA	3 cut(s)	190, 427, 490
HpyAV	CCTTC	2 cut(s)	164, 191
HpyCH4IV	ACGT	2 cut(s)	237, 573
HpyCH4V	TGCA	2 cut(s)	31, 605
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 515, 524, 596
HpySE526I	ACGT	2 cut(s)	237, 573
Hsp92II	CATG	4 cut(s)	58, 343, 439, 598
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	249, 294, 366, 486
LpnPI	CCDG	6 cut(s)	27, 49, 76, 381, 449, 503
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	2 cut(s)	79, 432
MaeII	ACGT	2 cut(s)	237, 573
MaeIII	GTNAC	3 cut(s)	95, 160, 187
MalI	GATC	4 cut(s)	251, 296, 368, 488
MboI	GATC	4 cut(s)	249, 294, 366, 486
MboII	GAAGA	3 cut(s)	43, 131, 134
MfeI	CAATTG	1 cut(s)	124
MflI	RGATCY	2 cut(s)	366, 486
MhlI	GDGCHC	1 cut(s)	262
MlsI	TGGCCA	1 cut(s)	67
MluCI	AATT	6 cut(s)	10, 23, 69, 124, 481, 549
MluNI	TGGCCA	1 cut(s)	67
MlyI	GAGTC	3 cut(s)	168, 287, 548
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	6 cut(s)	91, 115, 126, 215, 550, 554
Mox20I	TGGCCA	1 cut(s)	67
MscI	TGGCCA	1 cut(s)	67
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	2 cut(s)	407, 440
Msp20I	TGGCCA	1 cut(s)	67
MspA1I	CMGCKG	1 cut(s)	497
MspR9I	CCNGG	1 cut(s)	64
MunI	CAATTG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	4 cut(s)	64, 515, 524, 596
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	4 cut(s)	249, 294, 366, 486
NlaIII	CATG	4 cut(s)	58, 343, 439, 598
NlaIV	GGNNCC	2 cut(s)	114, 488
NmuCI	GTSAC	2 cut(s)	160, 187
NspV	TTCGAA	1 cut(s)	474
PkrI	GCNGC	3 cut(s)	317, 601, 604
PleI	GAGTC	3 cut(s)	168, 286, 547
PpsI	GAGTC	3 cut(s)	168, 286, 547
PpuMI	RGGWCCY	1 cut(s)	224
PsiI	TTATAA	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	114, 488
PspPI	GGNCC	1 cut(s)	224
PspPPI	RGGWCCY	1 cut(s)	224
PsuI	RGATCY	2 cut(s)	366, 486
PvuII	CAGCTG	1 cut(s)	497
RseI	CAYNNNNRTG	2 cut(s)	407, 440
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	3 cut(s)	316, 600, 603
Sau3AI	GATC	4 cut(s)	249, 294, 366, 486
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	3 cut(s)	168, 287, 548
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	7 cut(s)	83, 226, 240, 499, 507, 561, 576
SfaNI	GCATC	2 cut(s)	79, 432
SfuI	TTCGAA	1 cut(s)	474
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	2 cut(s)	407, 440
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	6 cut(s)	10, 23, 69, 124, 481, 549
SsiI	CCGC	3 cut(s)	315, 318, 599
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	3 cut(s)	156, 300, 435
TaiI	ACGT	2 cut(s)	240, 576
TaqI	TCGA	4 cut(s)	220, 359, 407, 474
TasI	AATT	6 cut(s)	10, 23, 69, 124, 481, 549
TauI	GCSGC	2 cut(s)	318, 602
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseFI	GTSAC	2 cut(s)	160, 187
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	2 cut(s)	160, 187
TspDTI	ATGAA	2 cut(s)	43, 183
VpaK11BI	GGWCC	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.