Rorug01G0128900

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004174
Physical Location & Seq
Forward (+)
21947981 .. 21951294
3314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0128900.1

Sequence Viewer

Length: 570 bp
ATGCAAAGTTCAGGAATGCCTTGGCCTGGTGATGAGGGTGAACAACGATGGGAACAAGCATGGTTGGCTATAAAAAAGGTCTGGGCTTCAAAGTGGAATGAGAAAGCATACTTCAGCACAAGAAAAGTGAAATTAGACCATGATTATCTTTGCATGGCTGTCCTTGTTCAAGAAATAATAAATGCCGACTATGCATTCGTTATTCACACAACTAACCCATCTTCAGGAGACTCGTCGGAGATATATGCCGAGGTTGTCAAAGGTCTTGGAGAAACCTTAGTTGGAGCTTATCCTAGACGTGCCTTAAGTTTTATTAGCAAGAAAAATGCTCTGGACTCTCCTCAGGTGTTAGGTTACCCTAGCAAACCGGTTGGCCTCTTTATCAGACGGTCCATAATCTTCCGATCCGATTCCAATGGTGAAGATCTTGAAGGTTATGCTGGTGCAGGCCTTTATGACAGTGTGCCTATGGATGCGGAAGAGGAAGTCGTGCTTGACTACTCATCTGACCCACTCGTTACTGATGGGAACTTCCAAAAGACAATTCTGTCCAGCATTGCTCGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009733 GO:0009870 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015267 GO:0015288 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0022803 GO:0022829 GO:0022857 GO:0023052 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045088 GO:0045089 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0055085 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2 Nup96

Protein Analysis

189

Amino Acids

20.98

Weight (kDa)

4.89

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPDK_N PF01326 19 - 95 2.1e-13 Pyruvate phosphate dikinase, AMP/ATP-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 547
AccII CGCG 1 cut(s) 564
AciI CCGC 1 cut(s) 476
AclWI GGATC 1 cut(s) 399
AcuI CTGAAG 2 cut(s) 97, 207
AfiI CCNNNNNNNGG 2 cut(s) 26, 224
AflII CTTAAG 1 cut(s) 304
AgeI ACCGGT 1 cut(s) 367
AgsI TTSAA 3 cut(s) 90, 170, 431
AjiI CACGTC 1 cut(s) 299
AjnI CCWGG 1 cut(s) 25
AjuI GAANNNNNNNTTGG 4 cut(s) 264, 296, 528, 560
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 399
AoxI GGCC 3 cut(s) 23, 373, 448
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AsiGI ACCGGT 1 cut(s) 367
AspLEI GCGC 1 cut(s) 566
AspS9I GGNCC 1 cut(s) 390
AsuHPI GGTGA 3 cut(s) 41, 50, 431
AvaII GGWCC 1 cut(s) 390
AxyI CCTNAGG 1 cut(s) 342
BccI CCATC 3 cut(s) 42, 226, 518
BciT130I CCWGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 2 cut(s) 294, 360
BfrI CTTAAG 1 cut(s) 304
BglII AGATCT 1 cut(s) 424
Bme1390I CCNGG 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 390
BmgBI CACGTC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 390
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 463
BsaJI CCNNGG 2 cut(s) 20, 249
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 224
Bse118I RCCGGY 1 cut(s) 367
Bse21I CCTNAGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 2 cut(s) 20, 249
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 2 cut(s) 26, 224
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 1 cut(s) 356
BseRI GAGGAG 1 cut(s) 330
BsgI GTGCAG 1 cut(s) 465
Bsh1236I CGCG 1 cut(s) 564
BshFI GGCC 3 cut(s) 25, 375, 450
BshTI ACCGGT 1 cut(s) 367
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 2 cut(s) 26, 224
BsmAI GTCTC 1 cut(s) 222
BsmI GAATGC 2 cut(s) 21, 194
BsnI GGCC 3 cut(s) 25, 375, 450
Bsp143I GATC 2 cut(s) 404, 424
BspACI CCGC 1 cut(s) 476
BspANI GGCC 3 cut(s) 25, 375, 450
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 564
BspPI GGATC 1 cut(s) 399
BspTI CTTAAG 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 2 cut(s) 20, 249
BssMI GATC 2 cut(s) 404, 424
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 390, 461
Bst6I CTCTTC 1 cut(s) 474
BstAFI CTTAAG 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 448, 562
BstDEI CTNAG 2 cut(s) 277, 342
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 1 cut(s) 478
BstFNI CGCG 1 cut(s) 564
BstHHI GCGC 1 cut(s) 566
BstKTI GATC 2 cut(s) 407, 427
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 2 cut(s) 404, 424
BstMWI GCNNNNNNNGC 3 cut(s) 65, 191, 561
BstNI CCWGG 1 cut(s) 27
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 25
BstUI CGCG 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 3 cut(s) 25, 375, 450
BtrI CACGTC 1 cut(s) 299
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 448, 562
CfoI GCGC 1 cut(s) 566
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 1 cut(s) 390
CspAI ACCGGT 1 cut(s) 367
CviAII CATG 4 cut(s) 60, 140, 154, 567
CviJI RGCY 7 cut(s) 25, 68, 86, 158, 287, 375, 450
CviKI_1 RGCY 7 cut(s) 25, 68, 86, 158, 287, 375, 450
DdeI CTNAG 2 cut(s) 277, 342
DpnI GATC 2 cut(s) 406, 426
DpnII GATC 2 cut(s) 404, 424
DrdI GACNNNNNNGTC 1 cut(s) 547
DseDI GACNNNNNNGTC 1 cut(s) 547
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 390
Eco57I CTGAAG 2 cut(s) 97, 207
Eco81I CCTNAGG 1 cut(s) 342
Eco91I GGTNACC 1 cut(s) 353
EcoO65I GGTNACC 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 4 cut(s) 63, 143, 157, 570
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FatI CATG 4 cut(s) 59, 139, 153, 566
FokI GGATG 1 cut(s) 485
FspBI CTAG 2 cut(s) 294, 360
GlaI GCGC 1 cut(s) 565
HaeIII GGCC 3 cut(s) 25, 375, 450
HapII CCGG 1 cut(s) 368
HhaI GCGC 1 cut(s) 566
Hin1II CATG 4 cut(s) 63, 143, 157, 570
Hin6I GCGC 1 cut(s) 564
HinP1I GCGC 1 cut(s) 564
HinfI GANTC 3 cut(s) 230, 335, 410
HpaII CCGG 1 cut(s) 368
HphI GGTGA 3 cut(s) 41, 50, 431
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 5 cut(s) 238, 386, 404, 409, 508
Hpy188III TCNNGA 5 cut(s) 12, 170, 225, 332, 428
Hpy8I GTNNAC 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 2 cut(s) 390, 461
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 4 cut(s) 4, 153, 194, 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 191, 561
HpyF3I CTNAG 2 cut(s) 277, 342
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 4 cut(s) 63, 143, 157, 570
HspAI GCGC 1 cut(s) 564
Kzo9I GATC 2 cut(s) 404, 424
LmnI GCTCC 1 cut(s) 284
LweI GCATC 1 cut(s) 463
MaeI CTAG 2 cut(s) 294, 360
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 2 cut(s) 353, 517
MalI GATC 2 cut(s) 406, 426
MboI GATC 2 cut(s) 404, 424
MboII GAAGA 4 cut(s) 213, 391, 434, 491
MflI RGATCY 1 cut(s) 424
MluCI AATT 2 cut(s) 131, 543
MlyI GAGTC 2 cut(s) 224, 329
MmeI TCCRAC 2 cut(s) 216, 262
MnlI CCTC 5 cut(s) 28, 244, 351, 386, 475
Mph1103I ATGCAT 1 cut(s) 196
MseI TTAA 1 cut(s) 305
MspCI CTTAAG 1 cut(s) 304
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 27
Mva1269I GAATGC 2 cut(s) 21, 194
MvaI CCWGG 1 cut(s) 27
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 3 cut(s) 65, 191, 561
NdeII GATC 2 cut(s) 404, 424
NlaIII CATG 4 cut(s) 63, 143, 157, 570
NmeAIII GCCGAG 1 cut(s) 274
NsiI ATGCAT 1 cut(s) 196
PceI AGGCCT 1 cut(s) 450
PctI GAATGC 2 cut(s) 21, 194
PfeI GAWTC 1 cut(s) 410
PinAI ACCGGT 1 cut(s) 367
PleI GAGTC 2 cut(s) 224, 329
PpsI GAGTC 2 cut(s) 224, 329
Psp6I CCWGG 1 cut(s) 25
PspEI GGTNACC 1 cut(s) 353
PspGI CCWGG 1 cut(s) 25
PspPI GGNCC 1 cut(s) 390
PsuI RGATCY 1 cut(s) 424
SaqAI TTAA 1 cut(s) 305
Sau3AI GATC 2 cut(s) 404, 424
Sau96I GGNCC 1 cut(s) 390
SchI GAGTC 2 cut(s) 224, 329
ScrFI CCNGG 1 cut(s) 27
SetI ASST 9 cut(s) 81, 255, 265, 278, 289, 301, 348, 355, 436
SfaNI GCATC 1 cut(s) 463
SinI GGWCC 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 2 cut(s) 131, 543
SseBI AGGCCT 1 cut(s) 450
SsiI CCGC 1 cut(s) 476
SspMI CTAG 2 cut(s) 294, 360
StuI AGGCCT 1 cut(s) 450
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 390, 461
TaiI ACGT 1 cut(s) 301
TasI AATT 2 cut(s) 131, 543
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 1 cut(s) 466
TspRI CASTG 1 cut(s) 466
Vha464I CTTAAG 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 390
XspI CTAG 2 cut(s) 294, 360
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.