Rw1G012120

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004174
Physical Location & Seq
Forward (+)
27090871 .. 27097633
6763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012120.1

Sequence Viewer

Length: 3222 bp
ATGTTCCATGATAAAATAGCACCTAAAAAAATTCACTGCAATCTATCATTTGCTTTACTTACTGAGTTGGTGTCGCATTTCACATTATTGTCAGGGACTCTTTGTGAACTCTATAGTGATACTATTGTGACTTCCTCTGCAATGGAAGTTGATGCCGGAACTCCGAATTCACAAATTTCAGCTCAACACAAAAAAAGAAGGACCGGAGTTTTGTTGTCCGAGACTTTTAGTAATGGTAATGGCGCTTTTTCCTTACCCTACCTACCAACTCTTGAAGCAGCTGATTACTATACGCAGCCTTCTTTGAAGGAACTGGCTGCTCGAGAACGTATGGATCCTGGTTATTCTACGCGAGTTTTGGACTTTACGGTTGGGAGGTTTGGTTATGGATCTGTCAAGTATCCTGGGGAGACTGATGTTAGGTGTTTAGAATTAGATAGAATTGTCAAGTTCCGCAGGCATGAGGTGTTTGTATATGAAGATGAGAGTGCCAAGCCTTTGGTTGGCCATGGCCTTAACAAGCCTGCTGAAGTAACTTTGATGCTACAAACAAGGGTATCGTGTGTTGACCAGAGACAGAAAGAGAATATCGTGAAAATATTGAGACAAAGTGTGGAGGGACAAGGAGCTCATTTTGTTTCGTTTAATCCAGAAAATGGGGAATGGAAATTCTTTGTTAACCATTTTAGCAGATTTGGGTTGACTGAAGAAGATGAAGAAGATATGATGATGGAAGATACTGCTGTAGCTGAAGATCCTCCGGAATTGAACCATGATGAGATCTCTGATACTGATGAAGAAAACCAAATGGATCCTACTGGAATTGTGCTCTCGCATTCTCTTCCTGCTCATCTTGGGCTTGACCCCATCAAGATGCAAGAAATGAGAATGTTGATGTTTTCTGATTTGGATGAGGAAGCCGAGGATATGAAAGAATTACCTGCACATTATAATCCATCATTTGGTAAAGAATACTCAAGATCTCCTTTAGAAAATGCTCAAAGGATGAGTTATCGATCTACTCCACCAGCCGTGCGAAAGACCCCTCTAGCATTGCTTGAGTACAAGCATGGTAGTTTTGACTCAAACTCTCCTGGAGCCATTCTAATGGCCCAGGAAAATAAAGCCTTGCCATTGAAGACACTAAAAGAAGGTTTTAAGCTTGATCTCAGTAGTGAAACACCAGCAACTAGAAAAGATTCTCGCAACATAGTTGATGCAGGTTTGTTAATGGGTAGGTCTTTTCGAGTAGGATGGGGCCCAAATGGAATTCTTGTCCATGCTGGCACACCAATAGGCAGTAATGGTTCCCAAAGGGTGCTGTCATCTGTAATTAATATAGAGAAGGTTGCTATTGACAATGTTGTCAGAGATAAAAATAACAAGGTTAGAGCAGAACTTGTTGAAACGGCTATCACTTCTCCATTGGAGCTTCACAAGGGACTGTTTCATGAAACAAAAGAAGTTGAAGTTGGATCCTTCAGTCTGAGACTTCAGAAACTTGTCTCGAATCGGTTTATGCTATCAGATATTTGCAGGAGTTATGTAGGTATTATTGAGAGGCAGCTGGAGGTTCCTGGTTTATCTTCCTCTGCATGTTTGGTTTTGCCACATCAAATTATGATTTGGGAATTGATAAAAGTTCTTTTCTCTGAAAGGGAAAATGGCGAGAAAATGGGATCTTTTGGTGCTGATGATGAGGTAGAAATGGTGCAGGATGAGAAGCTCCCTTCACAGGAAACTGACCCGGAAGCATTACCTCTAATTAGGAGGGCCGAGTTCAGTTACTGGTTGCAAGAAAATGTGCACCATCGAGTAGAAGAAATCATCTCCTTGAATGAGTCCAATTATCTGCAATCCATATTATTACTTCTGAGTGGGCGGCAGCTGGATGAAGCTGTGGAACTGGCTGCTTCTCAGGGAGACGTGAGATTGGCTTGTTTGTTAAGTCAGTCTGGTGGGTCCATAGTTAATCGTTCTGACATTGCACAGCAGCTTGAGCTTTGGAGGATCAATGGACTGGATTTCAGTTTCATTGAGAAAGATAGGATAAGGCTTTATGAGTTGCTTGCGGGTAATGTCCACGGTGCTTTTCATGATATTGAAGTTGATTGGAAGAGGTTTCTTGGGTTATTGATGTGGTATCACTTACCACCTAATATTCCATTACCCATTGTTTTCCGCACATATCATGATCTTCTTAATGAGAATAAGGCTCCATATCCTGTTCCTGTTTACATGGATGGACAACGTTATGACATATCATATTACCTTATGATGCTACATGGAAGTGAAGATAGTGAAGTTGATTTCCTGAAGACCATGTTCAGTGCTTTCTCGTCAACATATGATCCACTTGATTACCATATGATCTGGCATCAGCGTGCTGTGTTGGAAGCAGTTGGGGTCATCAGTGCCAATGATCTTCATGTTCTTGACATGGGATTTGTTTCCCAGTTGTTGTGTCTTGGGCAATGTCATTGGGCCATCTATGTGGTCCTTCACATGGCCCATTGTGAAGACTTTCCATATCTTCATGCTAATCTTATTCGGGAAATTTTGTTCCAATATTGTGATTCTTGGAGCTCACAAATATCACAACGCCAATTCATTGAGGACTTGGGTATTCCTAAAGCATGGCTTCATGAGGCTATGGCAGTTTATTTCAATTATTATGGGGATCTTTCAAAGGCACTTGAACACTTCATTGAATGTGCAAACTGGCAGAAAGCGCATTCTATTTTCGTAACTTCTGTTGCTCACACATTATTCTTGTCAGCCAAACACTCAGAGATATGGAGGCTAGCAACTTCCATGGAGGACCACAAATCAGAAATTGAAAATTGGGACTTGGGAGCTGGCATCTACATTTCATTCTATCTAACAAGAAGTTCATTGCAGGGAGCTGACGATGCCATGAGTGAACTGGGTTCTGTTGAAAGCAAAAATGCTGCTTCCAGAGAGTTTCTTGGTCAGTTAAACTTGTCTTTGGCTGTTTGGGGTGCCAAGCTACCAATGGATGTGAGAGTCGTCTATTCGAAGATGGCGGATGAAATATGCAACTTGCTTTTGTCTGATATTAGCGAGGGCCCAACACGAGATGTTCAGTTAAGTTGCTTTGACACCGTTTTCAGTGCGCCCATACCTCAGGACCTTCGCTCAAATCATTTGCAAGATGTAGTGTCTCTCTTCACATGCTTTCTATCCGAAGTTGCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009733 GO:0009870 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015267 GO:0015288 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0022803 GO:0022829 GO:0022857 GO:0023052 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045088 GO:0045089 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0055085 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2 Nup96

Protein Analysis

1073

Amino Acids

121.32

Weight (kDa)

5.09

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoporin2 PF04096 94 - 234 3.6e-38 Nup98-96 autopeptidase S59
Nup96 PF12110 620 - 888 1.9e-72 Nuclear protein 96
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 951
AasI GACNNNNNNGTC 1 cut(s) 1364
Acc36I ACCTGC 2 cut(s) 949, 1211
AccB1I GGYRCC 1 cut(s) 3002
AccB7I CCANNNNNTGG 2 cut(s) 656, 962
AccII CGCG 1 cut(s) 352
AccIII TCCGGA 1 cut(s) 760
AciI CCGC 5 cut(s) 454, 1882, 2072, 2182, 3047
AclI AACGTT 1 cut(s) 2251
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 6 cut(s) 30, 166, 174, 668, 1269, 2556
AcuI CTGAAG 6 cut(s) 549, 726, 771, 1465, 1478, 2336
AfaI GTAC 1 cut(s) 1064
AfiI CCNNNNNNNGG 5 cut(s) 503, 656, 962, 1735, 2506
AjiI CACGTC 1 cut(s) 1927
AjnI CCWGG 5 cut(s) 337, 403, 1093, 1113, 1576
AjuI GAANNNNNNNTTGG 2 cut(s) 1455, 1487
AloI GAACNNNNNNTCC 2 cut(s) 2546, 2578
Alw21I GWGCWC 4 cut(s) 631, 831, 1809, 2588
Alw26I GTCTC 8 cut(s) 215, 404, 568, 598, 1483, 1510, 1917, 3189
Alw44I GTGCAC 1 cut(s) 1805
AlwNI CAGNNNCTG 1 cut(s) 1788
Ama87I CYCGRG 1 cut(s) 321
Aor13HI TCCGGA 1 cut(s) 760
AoxI GGCC 8 cut(s) 505, 511, 1110, 1258, 1773, 2484, 2508, 3088
ApaI GGGCCC 2 cut(s) 1262, 3092
ApaLI GTGCAC 1 cut(s) 1805
ApeKI GCWGC 8 cut(s) 278, 295, 317, 1564, 1885, 1910, 1993, 2951
ApoI RAATTY 6 cut(s) 30, 166, 174, 668, 1269, 2556
ArsI GACNNNNNNTTYG 4 cut(s) 193, 225, 2429, 2461
AseI ATTAAT 1 cut(s) 1335
Asp700I GAANNNNTTC 2 cut(s) 1198, 2523
AspLEI GCGC 3 cut(s) 245, 2734, 3139
AsuC2I CCSGG 1 cut(s) 1748
AsuII TTCGAA 1 cut(s) 3038
AsuNHI GCTAGC 1 cut(s) 2803
AvaI CYCGRG 1 cut(s) 321
AvaII GGWCC 5 cut(s) 201, 1962, 2497, 2821, 3151
AxyI CCTNAGG 1 cut(s) 3147
BaeGI GKGCMC 3 cut(s) 1262, 1809, 3092
BaeI ACNNNNGTAYC 6 cut(s) 111, 144, 540, 573, 729, 762
BalI TGGCCA 1 cut(s) 507
BamHI GGATCC 3 cut(s) 334, 811, 1475
BanI GGYRCC 1 cut(s) 3002
BanII GRGCYC 4 cut(s) 631, 1262, 2588, 3092
BauI CACGAG 1 cut(s) 3096
BbsI GAAGAC 3 cut(s) 1145, 2324, 2526
Bbv12I GWGCWC 4 cut(s) 631, 831, 1809, 2588
BbvI GCAGC 8 cut(s) 290, 304, 307, 1576, 1897, 1897, 2005, 2938
BccI CCATC 8 cut(s) 724, 875, 964, 1248, 1818, 2237, 2495, 3037
BceAI ACGGC 2 cut(s) 1016, 1425
BciT130I CCWGG 5 cut(s) 339, 405, 1095, 1115, 1578
BciVI GTATCC 1 cut(s) 411
BcnI CCSGG 1 cut(s) 1748
BcoDI GTCTC 8 cut(s) 215, 404, 568, 598, 1483, 1510, 1917, 3189
BfaI CTAG 3 cut(s) 1049, 1191, 2804
BfmI CTRYAG 2 cut(s) 112, 744
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 2 cut(s) 949, 1211
BfuI GTATCC 1 cut(s) 411
BglII AGATCT 2 cut(s) 780, 980
BisI GCNGC 9 cut(s) 279, 296, 318, 1565, 1883, 1886, 1911, 1994, 2952
BlsI GCNGC 9 cut(s) 280, 297, 319, 1566, 1884, 1887, 1912, 1995, 2953
Bme1390I CCNGG 6 cut(s) 339, 405, 1095, 1115, 1578, 1748
Bme18I GGWCC 5 cut(s) 201, 1962, 2497, 2821, 3151
BmeT110I CYCGRG 1 cut(s) 321
BmgBI CACGTC 1 cut(s) 1927
BmrFI CCNGG 6 cut(s) 339, 405, 1095, 1115, 1578, 1748
BmrI ACTGGG 2 cut(s) 2449, 2936
BmsI GCATC 8 cut(s) 142, 531, 864, 1207, 2268, 2386, 2871, 2902
BmtI GCTAGC 1 cut(s) 2807
BmuI ACTGGG 2 cut(s) 2449, 2936
BpiI GAAGAC 3 cut(s) 1145, 2324, 2526
BpmI CTGGAG 2 cut(s) 1116, 1589
Bpu14I TTCGAA 1 cut(s) 3038
BpuEI CTTGAG 3 cut(s) 961, 1079, 2018
BpuMI CCSGG 1 cut(s) 1748
Bsa29I ATCGAT 1 cut(s) 1015
BsaJI CCNNGG 6 cut(s) 404, 508, 921, 1113, 2083, 2814
BsaWI WCCGGW 2 cut(s) 203, 760
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bsc4I CCNNNNNNNGG 5 cut(s) 503, 656, 962, 1735, 2506
Bse1I ACTGG 8 cut(s) 318, 823, 1793, 1911, 2025, 2455, 2726, 2931
Bse21I CCTNAGG 1 cut(s) 3147
Bse3DI GCAATG 5 cut(s) 147, 1052, 1983, 2480, 2894
BseAI TCCGGA 1 cut(s) 760
BseBI CCWGG 5 cut(s) 339, 405, 1095, 1115, 1578
BseCI ATCGAT 1 cut(s) 1015
BseDI CCNNGG 6 cut(s) 404, 508, 921, 1113, 2083, 2814
BseGI GGATG 8 cut(s) 916, 1011, 1259, 1723, 1897, 2248, 3025, 3055
BseLI CCNNNNNNNGG 5 cut(s) 503, 656, 962, 1735, 2506
BseMI GCAATG 5 cut(s) 147, 1052, 1983, 2480, 2894
BseMII CTCAG 7 cut(s) 54, 1183, 1478, 1865, 1931, 2802, 3161
BseNI ACTGG 8 cut(s) 318, 823, 1793, 1911, 2025, 2455, 2726, 2931
BseSI GKGCMC 3 cut(s) 1262, 1809, 3092
BseXI GCAGC 8 cut(s) 290, 304, 307, 1576, 1897, 1897, 2005, 2938
BsgI GTGCAG 2 cut(s) 927, 1733
Bsh1236I CGCG 1 cut(s) 352
BshFI GGCC 8 cut(s) 507, 513, 1112, 1260, 1775, 2486, 2510, 3090
BshNI GGYRCC 1 cut(s) 3002
BshVI ATCGAT 1 cut(s) 1015
BsiHKAI GWGCWC 4 cut(s) 631, 831, 1809, 2588
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 4 cut(s) 156, 204, 761, 1748
BslFI GGGAC 4 cut(s) 109, 633, 1455, 2861
BslI CCNNNNNNNGG 5 cut(s) 503, 656, 962, 1735, 2506
BsmAI GTCTC 8 cut(s) 215, 404, 568, 598, 1483, 1510, 1917, 3189
BsmBI CGTCTC 1 cut(s) 1917
BsmFI GGGAC 4 cut(s) 109, 633, 1455, 2861
BsmI GAATGC 2 cut(s) 835, 2734
BsnI GGCC 8 cut(s) 507, 513, 1112, 1260, 1775, 2486, 2510, 3090
BsoBI CYCGRG 1 cut(s) 321
Bsp119I TTCGAA 1 cut(s) 3038
Bsp120I GGGCCC 2 cut(s) 1258, 3088
Bsp1286I GDGCHC 6 cut(s) 631, 831, 1262, 1809, 2588, 3092
Bsp13I TCCGGA 1 cut(s) 760
Bsp19I CCATGG 2 cut(s) 508, 2814
BspACI CCGC 5 cut(s) 454, 1882, 2072, 2182, 3047
BspANI GGCC 8 cut(s) 507, 513, 1112, 1260, 1775, 2486, 2510, 3090
BspCNI CTCAG 7 cut(s) 55, 1182, 1479, 1866, 1930, 2801, 3160
BspDI ATCGAT 1 cut(s) 1015
BspEI TCCGGA 1 cut(s) 760
BspFNI CGCG 1 cut(s) 352
BspHI TCATGA 4 cut(s) 1450, 2095, 2191, 2644
BspMI ACCTGC 2 cut(s) 949, 1211
BspOI GCTAGC 1 cut(s) 2807
BspT104I TTCGAA 1 cut(s) 3038
BspT107I GGYRCC 1 cut(s) 3002
BsrDI GCAATG 5 cut(s) 147, 1052, 1983, 2480, 2894
BsrI ACTGG 8 cut(s) 318, 823, 1793, 1911, 2025, 2455, 2726, 2931
BssECI CCNNGG 6 cut(s) 404, 508, 921, 1113, 2083, 2814
BssSI CACGAG 1 cut(s) 3096
BssT1I CCWWGG 2 cut(s) 508, 2814
Bst2BI CACGAG 1 cut(s) 3096
Bst2UI CCWGG 5 cut(s) 339, 405, 1095, 1115, 1578
Bst4CI ACNGT 4 cut(s) 370, 1446, 2087, 3127
Bst6I CTCTTC 3 cut(s) 846, 2111, 3194
BstBI TTCGAA 1 cut(s) 3038
BstC8I GCNNGC 7 cut(s) 458, 525, 1285, 2070, 2385, 2805, 2860
BstDEI CTNAG 7 cut(s) 63, 1169, 1487, 1874, 1917, 2788, 3147
BstDSI CCRYGG 3 cut(s) 508, 2083, 2814
BstF5I GGATG 8 cut(s) 916, 1011, 1259, 1723, 1897, 2248, 3025, 3055
BstFNI CGCG 1 cut(s) 352
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 3 cut(s) 245, 2734, 3139
BstMAI GTCTC 8 cut(s) 215, 404, 568, 598, 1483, 1510, 1917, 3189
BstMWI GCNNNNNNNGC 3 cut(s) 1999, 2731, 2912
BstNI CCWGG 5 cut(s) 339, 405, 1095, 1115, 1578
BstNSI RCATGY 2 cut(s) 1599, 3198
BstSCI CCNGG 6 cut(s) 337, 403, 1093, 1113, 1576, 1746
BstSFI CTRYAG 2 cut(s) 112, 744
BstSLI GKGCMC 3 cut(s) 1262, 1809, 3092
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 8 cut(s) 290, 304, 307, 1576, 1897, 1897, 2005, 2938
BstV2I GAAGAC 3 cut(s) 1145, 2324, 2526
BstX2I RGATCY 9 cut(s) 334, 389, 754, 780, 811, 980, 1475, 1679, 2680
BstXI CCANNNNNNTGG 3 cut(s) 499, 1108, 2494
BstYI RGATCY 9 cut(s) 334, 389, 754, 780, 811, 980, 1475, 1679, 2680
Bsu15I ATCGAT 1 cut(s) 1015
Bsu36I CCTNAGG 1 cut(s) 3147
BsuI GTATCC 1 cut(s) 411
BsuRI GGCC 8 cut(s) 507, 513, 1112, 1260, 1775, 2486, 2510, 3090
BsuTUI ATCGAT 1 cut(s) 1015
BtgI CCRYGG 3 cut(s) 508, 2083, 2814
BtrI CACGTC 1 cut(s) 1927
BtsCI GGATG 8 cut(s) 916, 1011, 1259, 1723, 1897, 2248, 3025, 3055
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 4 cut(s) 34, 2335, 2419, 3139
BveI ACCTGC 2 cut(s) 949, 1211
Cac8I GCNNGC 7 cut(s) 458, 525, 1285, 2070, 2385, 2805, 2860
CaiI CAGNNNCTG 1 cut(s) 1788
CciI TCATGA 4 cut(s) 1450, 2095, 2191, 2644
CfoI GCGC 3 cut(s) 245, 2734, 3139
ClaI ATCGAT 1 cut(s) 1015
Csp6I GTAC 1 cut(s) 1063
CviQI GTAC 1 cut(s) 1063
DdeI CTNAG 7 cut(s) 63, 1169, 1487, 1874, 1917, 2788, 3147
DrdI GACNNNNNNGTC 1 cut(s) 1364
DseDI GACNNNNNNGTC 1 cut(s) 1364
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 3 cut(s) 846, 2111, 3194
EarI CTCTTC 3 cut(s) 846, 2111, 3194
EciI GGCGGA 1 cut(s) 3062
Ecl136II GAGCTC 2 cut(s) 629, 2586
Eco130I CCWWGG 2 cut(s) 508, 2814
Eco24I GRGCYC 4 cut(s) 631, 1262, 2588, 3092
Eco47I GGWCC 5 cut(s) 201, 1962, 2497, 2821, 3151
Eco53kI GAGCTC 2 cut(s) 629, 2586
Eco57I CTGAAG 6 cut(s) 549, 726, 771, 1465, 1478, 2336
Eco81I CCTNAGG 1 cut(s) 3147
Eco88I CYCGRG 1 cut(s) 321
EcoICRI GAGCTC 2 cut(s) 629, 2586
EcoO109I RGGNCCY 3 cut(s) 1258, 3088, 3151
EcoRI GAATTC 2 cut(s) 166, 1269
EcoRII CCWGG 5 cut(s) 337, 403, 1093, 1113, 1576
EcoT14I CCWWGG 2 cut(s) 508, 2814
EcoT38I GRGCYC 4 cut(s) 631, 1262, 2588, 3092
ErhI CCWWGG 2 cut(s) 508, 2814
Esp3I CGTCTC 1 cut(s) 1917
FalI AAGNNNNNCTT 4 cut(s) 970, 1002, 2625, 2657
FaqI GGGAC 4 cut(s) 109, 633, 1455, 2861
FauI CCCGC 1 cut(s) 2065
FauNDI CATATG 2 cut(s) 2347, 2367
Fnu4HI GCNGC 9 cut(s) 279, 296, 318, 1565, 1883, 1886, 1911, 1994, 2952
FokI GGATG 8 cut(s) 923, 1018, 1266, 1730, 1904, 2255, 3032, 3062
FriOI GRGCYC 4 cut(s) 631, 1262, 2588, 3092
Fsp4HI GCNGC 9 cut(s) 279, 296, 318, 1565, 1883, 1886, 1911, 1994, 2952
FspBI CTAG 3 cut(s) 1049, 1191, 2804
GlaI GCGC 3 cut(s) 244, 2733, 3138
GluI GCNGC 9 cut(s) 279, 296, 318, 1565, 1883, 1886, 1911, 1994, 2952
GsuI CTGGAG 2 cut(s) 1116, 1589
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 8 cut(s) 507, 513, 1112, 1260, 1775, 2486, 2510, 3090
HapII CCGG 4 cut(s) 156, 204, 761, 1748
HhaI GCGC 3 cut(s) 245, 2734, 3139
Hin6I GCGC 3 cut(s) 243, 2732, 3137
HinP1I GCGC 3 cut(s) 243, 2732, 3137
HincII GTYRAC 4 cut(s) 568, 679, 702, 2343
HindII GTYRAC 4 cut(s) 568, 679, 702, 2343
HindIII AAGCTT 1 cut(s) 1160
HinfI GANTC 7 cut(s) 97, 1082, 1199, 1510, 1841, 2576, 3027
HpaI GTTAAC 1 cut(s) 679
HpaII CCGG 4 cut(s) 156, 204, 761, 1748
Hpy166II GTNNAC 9 cut(s) 107, 568, 679, 702, 1807, 2083, 2236, 2343, 2924
Hpy8I GTNNAC 9 cut(s) 107, 568, 679, 702, 1807, 2083, 2236, 2343, 2924
HpyAV CCTTC 9 cut(s) 192, 301, 309, 1145, 1339, 1489, 1740, 2510, 3164
HpyCH4III ACNGT 4 cut(s) 370, 1446, 2087, 3127
HpyCH4IV ACGT 3 cut(s) 328, 1926, 2251
HpyF10VI GCNNNNNNNGC 3 cut(s) 1999, 2731, 2912
HpyF3I CTNAG 7 cut(s) 63, 1169, 1487, 1874, 1917, 2788, 3147
HpySE526I ACGT 3 cut(s) 328, 1926, 2251
HspAI GCGC 3 cut(s) 243, 2732, 3137
Kpn2I TCCGGA 1 cut(s) 760
KspAI GTTAAC 1 cut(s) 679
LmnI GCTCC 8 cut(s) 626, 1097, 1429, 1731, 2221, 2583, 2855, 2903
Lsp1109I GCAGC 8 cut(s) 290, 304, 307, 1576, 1897, 1897, 2005, 2938
LweI GCATC 8 cut(s) 142, 531, 864, 1207, 2268, 2386, 2871, 2902
MaeI CTAG 3 cut(s) 1049, 1191, 2804
MaeII ACGT 3 cut(s) 328, 1926, 2251
MaeIII GTNAC 4 cut(s) 127, 532, 1784, 2746
MflI RGATCY 9 cut(s) 334, 389, 754, 780, 811, 980, 1475, 1679, 2680
MhlI GDGCHC 6 cut(s) 631, 831, 1262, 1809, 2588, 3092
MlsI TGGCCA 1 cut(s) 507
MluNI TGGCCA 1 cut(s) 507
MlyI GAGTC 4 cut(s) 91, 1076, 1850, 3036
MmeI TCCRAC 2 cut(s) 1453, 2373
Mox20I TGGCCA 1 cut(s) 507
MroI TCCGGA 1 cut(s) 760
MroXI GAANNNNTTC 2 cut(s) 1198, 2523
MscI TGGCCA 1 cut(s) 507
MslI CAYNNNNRTG 5 cut(s) 872, 1106, 2289, 2382, 2492
Msp20I TGGCCA 1 cut(s) 507
MspA1I CMGCKG 3 cut(s) 281, 1567, 1888
MspI CCGG 4 cut(s) 156, 204, 761, 1748
MspR9I CCNGG 6 cut(s) 339, 405, 1095, 1115, 1578, 1748
Mva1269I GAATGC 2 cut(s) 835, 2734
MvaI CCWGG 5 cut(s) 339, 405, 1095, 1115, 1578
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 3 cut(s) 1999, 2731, 2912
NciI CCSGG 1 cut(s) 1748
NcoI CCATGG 2 cut(s) 508, 2814
NdeI CATATG 2 cut(s) 2347, 2367
NheI GCTAGC 1 cut(s) 2803
NmeAIII GCCGAG 2 cut(s) 946, 1801
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 2 cut(s) 1599, 3198
NspV TTCGAA 1 cut(s) 3038
PaeR7I CTCGAG 1 cut(s) 321
PagI TCATGA 4 cut(s) 1450, 2095, 2191, 2644
PctI GAATGC 2 cut(s) 835, 2734
PdmI GAANNNNTTC 2 cut(s) 1198, 2523
PfeI GAWTC 3 cut(s) 1199, 1510, 2576
PflMI CCANNNNNTGG 2 cut(s) 656, 962
PfoI TCCNGGA 1 cut(s) 1093
PkrI GCNGC 9 cut(s) 280, 297, 319, 1566, 1884, 1887, 1912, 1995, 2953
PleI GAGTC 4 cut(s) 91, 1076, 1849, 3035
PpsI GAGTC 4 cut(s) 91, 1076, 1849, 3035
PpuMI RGGWCCY 1 cut(s) 3151
PshBI ATTAAT 1 cut(s) 1335
PsiI TTATAA 1 cut(s) 951
Psp124BI GAGCTC 2 cut(s) 631, 2588
Psp1406I AACGTT 1 cut(s) 2251
Psp5II RGGWCCY 1 cut(s) 3151
Psp6I CCWGG 5 cut(s) 337, 403, 1093, 1113, 1576
PspGI CCWGG 5 cut(s) 337, 403, 1093, 1113, 1576
PspOMI GGGCCC 2 cut(s) 1258, 3088
PspPPI RGGWCCY 1 cut(s) 3151
PstNI CAGNNNCTG 1 cut(s) 1788
PsuI RGATCY 9 cut(s) 334, 389, 754, 780, 811, 980, 1475, 1679, 2680
PvuII CAGCTG 3 cut(s) 281, 1567, 1888
RsaI GTAC 1 cut(s) 1064
RsaNI GTAC 1 cut(s) 1063
RseI CAYNNNNRTG 5 cut(s) 872, 1106, 2289, 2382, 2492
SacI GAGCTC 2 cut(s) 631, 2588
SatI GCNGC 9 cut(s) 279, 296, 318, 1565, 1883, 1886, 1911, 1994, 2952
SchI GAGTC 4 cut(s) 91, 1076, 1850, 3036
ScrFI CCNGG 6 cut(s) 339, 405, 1095, 1115, 1578, 1748
SduI GDGCHC 6 cut(s) 631, 831, 1262, 1809, 2588, 3092
SfaNI GCATC 8 cut(s) 142, 531, 864, 1207, 2268, 2386, 2871, 2902
SfcI CTRYAG 2 cut(s) 112, 744
Sfr274I CTCGAG 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 3038
SinI GGWCC 5 cut(s) 201, 1962, 2497, 2821, 3151
SlaI CTCGAG 1 cut(s) 321
SmiMI CAYNNNNRTG 5 cut(s) 872, 1106, 2289, 2382, 2492
SmlI CTYRAG 4 cut(s) 321, 976, 1058, 1997
SmoI CTYRAG 4 cut(s) 321, 976, 1058, 1997
SsiI CCGC 5 cut(s) 454, 1882, 2072, 2182, 3047
SspI AATATT 3 cut(s) 600, 2161, 2570
SspMI CTAG 3 cut(s) 1049, 1191, 2804
SstI GAGCTC 2 cut(s) 631, 2588
StyD4I CCNGG 6 cut(s) 337, 403, 1093, 1113, 1576, 1746
StyI CCWWGG 2 cut(s) 508, 2814
TaaI ACNGT 4 cut(s) 370, 1446, 2087, 3127
TaiI ACGT 3 cut(s) 331, 1929, 2254
TaqI TCGA 6 cut(s) 322, 1015, 1246, 1508, 1813, 3038
TatI WGTACW 1 cut(s) 1062
TauI GCSGC 1 cut(s) 1885
TfiI GAWTC 3 cut(s) 1199, 1510, 2576
TscAI CASTG 4 cut(s) 41, 2335, 2419, 3139
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 8 cut(s) 278, 295, 317, 1564, 1885, 1910, 1993, 2951
Tsp45I GTSAC 1 cut(s) 127
TspRI CASTG 4 cut(s) 41, 2335, 2419, 3139
Van91I CCANNNNNTGG 2 cut(s) 656, 962
VneI GTGCAC 1 cut(s) 1805
VpaK11BI GGWCC 5 cut(s) 201, 1962, 2497, 2821, 3151
VspI ATTAAT 1 cut(s) 1335
XapI RAATTY 6 cut(s) 30, 166, 174, 668, 1269, 2556
XceI RCATGY 2 cut(s) 1599, 3198
XcmI CCANNNNNNNNNTGG 2 cut(s) 2923, 3013
XhoI CTCGAG 1 cut(s) 321
XmnI GAANNNNTTC 2 cut(s) 1198, 2523
XspI CTAG 3 cut(s) 1049, 1191, 2804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.