FvH4_5g27200

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004174
Physical Location & Seq
Forward (+)
18481414 .. 18488955
7542 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27200.t3

Sequence Viewer

Length: 3270 bp
ATGGATTCTGTATTGATGTTGCAGCAATTGGGTGATGATAATAAGAAGAGGCCTAGATGTCACGAGGTCAAGTTCATGAAAGAACCAAGCACCAAATCCAGGAAAATCAACTGCAACTCTCCCTCTCCACTACCTCACTGCATTACTAGGAACTTGGCTTCGCCAATGAATCTGTTAAAGGAAGATCTGTATTACACAACTAGGGGTTCCTTCGGGTTGGATGATAATGGTAAGATGTTAGTGTTAGATCATCATAATGGTAATGGCGGTTTGTTAGGCTACCTACCGACTCTTGAGGCGGTTGATTACTATATGCAGCCTTCCTTTGAGGAATTGGCTGCTCGAGAACGTGTGGATCCTGGTTATTGTAGCCGAGTTTTGGACTTTACGGTTGGGAGGTTTGGTTACGGAGCTGTCAAGTATCCTGGGGAGACTGATGTTAGGTGTTTGGAGTTGGATAAAATTGTGAAATTCAACAGGCACGAGGTGATTGTATATGAAGACGAGAGTGCTAAGCCTTTTGTTGGCCGGGGCCTTAACAAGCCTGCTGAAGTAACTCTGATGCTACAAACGAGACTGCCGTGTGTTGACCAGAGGCAGATAGAACATATTGTGAAAATATTGAGACACAGCGTGGAGGGACAAGGAGCTCATTTTGTTTCATTTAATCCGGAAAATGGGGAGTGGAAATTCTTTGTTAACCATTTTAGTAGATTTGGTTTGATTGATGAAGATGAAGAAGATATGATGATGGAAGATACTGATGTAGGTGAAGATCCTCCAGAATTAAACCATGATGAGATGTTTGATGAAGGAAACCAGATGGATCGTACTGGAACTGTGCTTTTGCATTCTCTTCCTGCTCATCTTGGGCTTGACCCCATCAAGATGCAAGAAATGAGAATGTTGATGTTTTCTGATGCGGAGGAGGAAGCCGAGGATTTTAAAGAATCACCTTCACATTATAATCCATCATTTGGTAAAGACTACTCGAGATCTCCTTTACAAAATGCTCAAAGGATTAGTCATCGATCTTCTCCACCAGCTGTTCGAAAGACCCCTCTAGCATTGCTCGGGTACAAGCATGGTAGTTTTGACTCAAACTCTCCTGGTGCCATTCTAATGGCACAGGAAAACAAAGCCTTGCCATTGAAGACACTAAAAGAAGGTTTTAAGCTTGATCTCAGTAGAGACACACCAGTAACTAGAAAAGATTCTCGCAACATAGTTGATGCAGGTTTGTTTATGGGTAGGTCATTTCGAGTAGGATGGGGCCCAAATGGAGTTCTTGTCCATGCTGGCGCACCAATAGGCAGTAGTGGTTCCCAAAGGGTGCTGTCATCTGTAATTAATATAGAGAAGGTTGCTATTGACAATGTTGTCAGAGATGAAAGTAACAAGGTTAGAGCAGAACTTGTTGAAACAGCTATTACTTCTCCATTGGAGCTTCACAAAGGACTATATCATGAAACAAAAGAAGTTGAAATTGGATCCTTCAGTCTGAGACTTCAGAAGCTTGTTTCGAATCAGTTTATGCTATCAGATATTTGCAGGAGCTATGTAGATAATATCGAGAGGCAGCTGGAGGTTCCGGGTTTATCTTCATCTGCTTGTTTGGTTTTGACACATCAAATTATGATATGGGAATTGATAAAAGTTCTTTTCTCTGAAAGAGAAAATGGCGGGAAACTGGAATCTTATGGTGTTGATGCCAAGGAAGAAATGGTGCAGGATGAGAAGCCCCCTTCACAAGAAACCGACCCGGAAGCATTTCCTCTTATTAGGAGGGCCGAGTTCAGTTACTGGTTGCAAGAAAATGTGCATGATAGAGTAGAAGAAATCATCTCCTTAAATGAGTCCAATTATCTGGAATCCATATTATTACTTCTGAGTGGGCGGCAGCTGGATGAAGCTGTAGAATTGGCTGCTTCTCAGGGAGATGTGAGATTGGCTTGTTTGTTAAGTCAATCTGGTGGGTCCATGGTTAATCGTTCTGACATCGCACGACAGCTTGAGCTTTGGAGTATTAATGGACTGGATATGAGTTTCATTGAGAAAGATAGGATAAGGCTTTATGAGTTGCTTGCTGGTAATGTCCACGGTGCTTTTCATGATATTGAAGTTGATTGGAAGAGGTTTTTAGGGTTAATGATGTGGTATCACTTGGCACCTAACACTCCATTACCTATTGTTTTCCGCACATATCAAGATCTTCTTAATGAGAATAAGGCTCCATTCCCTGTTCCTGTTTATATTGATGGATGTGTAAAAGAGACTGTGGATCAGAGTGCAGTGAAACGCTGTGACCTATCATATTACCTTATGATGCTACATGGCAGCGAAGATAGTGAAGTTGATTTCCTGAAGACCATGTTCAGTGCTTTCTCGTCAACATATGATCCACTTGATTACCATATGATCTGGCATCAGCGTGCTGTGTTGGAAGCAGTTGGAGTCATCAGTGCCAATGATCTTCATGTTCTTGACATGACATTTGTTTCCCAGTTATTGTGTCTTGGGCAATGTCATTGGGCCATCTATGTGGTCCTTCACATGGCCCATTGTGAAGACTTTCCATATCTTCATGCTAATCTAATTCGAGAAATTTTGTTCCAGTATTGTGATTCGTGGAGCTCACAAATATCACAACGCCAATTCATTGAGGGCTTGGGTATTCCAAAAGCATGGATTCATGAGGCTATGGCAGTTTATTTCAATTATTATGGGGATCTTCCGAAGGCGCTTGAACACTTTATTGAATGTGAAAACTGGCAGAAAGCTCATTCTATTTTTGTAACCTCTGTTGCGCACACATTGTTCTTGTCTGCCAAACACTCAGATATATGGAGGCTCGCAACTTCAATGGAGGACCACAAATCAGAAATTGAGAATTGGGACTTGGGAGCTGGCATCTACATTTCATTCTATCTAACAAGAAGTTCGTTGCAGGGAGCTGATGATGCCATGAGTGAACTGGATTCTGTTGAAAGCAAAAATGCTGCTTGCAGAGAGGTTCTTGGTCAGTTAAACAAGTCTTTGGCTGTTTGGGGTGCCAGGCTACCAATGGACGTGAGAGTCGTGTATTCAAAGATGGCAGATGAGATTTGCAACTTGCTTTTGCTTGATATTAATGAATGCCCAACACGAGATGTTCAGTTAAGTTGCTTTGACACTGTTTTCAGTGCGCCCATACCTCAAGACGTTCGCTCAAATCATTTGCAGGATGCAGTGTCACTCTTTACATGCTTTTTATCGGAAGTTGCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009733 GO:0009870 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015267 GO:0015288 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0022803 GO:0022829 GO:0022857 GO:0023052 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045088 GO:0045089 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0055085 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2 Nup96

Protein Analysis

1090

Amino Acids

123.46

Weight (kDa)

5.12

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoporin2 PF04096 102 - 241 1.7e-37 Nup98-96 autopeptidase S59
Nup96 PF12110 624 - 904 1.6e-75 Nuclear protein 96
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 966
AasI GACNNNNNNGTC 2 cut(s) 1379, 3074
Acc16I TGCGCA 1 cut(s) 2808
Acc36I ACCTGC 1 cut(s) 1226
AccB1I GGYRCC 3 cut(s) 1112, 2167, 3050
AccB7I CCANNNNNTGG 1 cut(s) 977
AccIII TCCGGA 1 cut(s) 670
AciI CCGC 6 cut(s) 267, 299, 923, 1683, 1897, 2197
AclWI GGATC 9 cut(s) 350, 363, 770, 834, 1485, 1498, 2289, 2393, 2736
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 3 cut(s) 470, 689, 2604
AcuI CTGAAG 4 cut(s) 570, 1480, 1493, 2384
AdeI CACNNNGTG 2 cut(s) 487, 634
AfaI GTAC 2 cut(s) 832, 1079
AfiI CCNNNNNNNGG 6 cut(s) 99, 379, 524, 677, 977, 2554
AflIII ACRYGT 1 cut(s) 349
AjiI CACGTC 1 cut(s) 3070
AjnI CCWGG 5 cut(s) 98, 358, 424, 1108, 3053
AjuI GAANNNNNNNTTGG 4 cut(s) 1470, 1502, 2882, 2914
Alw21I GWGCWC 2 cut(s) 652, 2636
Alw26I GTCTC 6 cut(s) 425, 568, 619, 1185, 1498, 2267
AlwI GGATC 9 cut(s) 350, 363, 770, 834, 1485, 1498, 2289, 2393, 2736
AlwNI CAGNNNCTG 1 cut(s) 1803
Ama87I CYCGRG 3 cut(s) 342, 991, 1073
Aor13HI TCCGGA 1 cut(s) 670
AoxI GGCC 7 cut(s) 50, 526, 532, 1273, 1788, 2532, 2556
ApaI GGGCCC 1 cut(s) 1277
ApeKI GCWGC 8 cut(s) 22, 316, 338, 1579, 1900, 1925, 2337, 2999
ApoI RAATTY 3 cut(s) 470, 689, 2604
ArsI GACNNNNNNTTYG 4 cut(s) 1009, 1041, 2477, 2509
AseI ATTAAT 3 cut(s) 1350, 2028, 3129
Asp700I GAANNNNTTC 3 cut(s) 1213, 1770, 2571
AspLEI GCGC 4 cut(s) 1304, 2743, 2809, 3187
AspS9I GGNCC 9 cut(s) 532, 1273, 1274, 1788, 1977, 2532, 2545, 2557, 2869
AsuC2I CCSGG 3 cut(s) 530, 1593, 1763
AsuHPI GGTGA 4 cut(s) 44, 499, 782, 945
AsuII TTCGAA 2 cut(s) 1051, 1523
AvaI CYCGRG 3 cut(s) 342, 991, 1073
AvaII GGWCC 3 cut(s) 1977, 2545, 2869
BaeGI GKGCMC 1 cut(s) 1277
BaeI ACNNNNGTAYC 2 cut(s) 750, 783
BamHI GGATCC 2 cut(s) 355, 1490
BanI GGYRCC 3 cut(s) 1112, 2167, 3050
BanII GRGCYC 3 cut(s) 652, 1277, 2636
BauI CACGAG 3 cut(s) 62, 482, 3144
BbsI GAAGAC 4 cut(s) 507, 1160, 2372, 2574
Bbv12I GWGCWC 2 cut(s) 652, 2636
BbvI GCAGC 8 cut(s) 34, 325, 328, 1591, 1912, 1912, 2349, 2986
BccI CCATC 8 cut(s) 745, 817, 890, 979, 1263, 2252, 2543, 3085
BceAI ACGGC 1 cut(s) 565
BciT130I CCWGG 5 cut(s) 100, 360, 426, 1110, 3055
BciVI GTATCC 1 cut(s) 432
BcnI CCSGG 3 cut(s) 530, 1593, 1763
BcoDI GTCTC 6 cut(s) 425, 568, 619, 1185, 1498, 2267
BfaI CTAG 5 cut(s) 54, 147, 201, 1064, 1206
BfmI CTRYAG 1 cut(s) 1914
BfoI RGCGCY 1 cut(s) 2744
BfuAI ACCTGC 1 cut(s) 1226
BfuI GTATCC 1 cut(s) 432
BglII AGATCT 3 cut(s) 184, 995, 2209
BisI GCNGC 9 cut(s) 23, 317, 339, 1580, 1898, 1901, 1926, 2338, 3000
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 9 cut(s) 24, 318, 340, 1581, 1899, 1902, 1927, 2339, 3001
Bme1390I CCNGG 8 cut(s) 100, 360, 426, 530, 1110, 1593, 1763, 3055
Bme18I GGWCC 3 cut(s) 1977, 2545, 2869
BmeT110I CYCGRG 3 cut(s) 342, 991, 1073
BmgBI CACGTC 1 cut(s) 3070
BmgT120I GGNCC 9 cut(s) 532, 1273, 1274, 1788, 1977, 2532, 2545, 2557, 2869
BmrFI CCNGG 8 cut(s) 100, 360, 426, 530, 1110, 1593, 1763, 3055
BmrI ACTGGG 1 cut(s) 2497
BmuI ACTGGG 1 cut(s) 2497
BpiI GAAGAC 4 cut(s) 507, 1160, 2372, 2574
BpmI CTGGAG 2 cut(s) 765, 1604
Bpu1102I GCTNAGC 1 cut(s) 513
Bpu14I TTCGAA 2 cut(s) 1051, 1523
BpuEI CTTGAG 3 cut(s) 314, 2033, 3180
BpuMI CCSGG 3 cut(s) 530, 1593, 1763
Bsa29I ATCGAT 1 cut(s) 1030
BsaJI CCNNGG 6 cut(s) 425, 529, 936, 1713, 1980, 2098
BsaWI WCCGGW 1 cut(s) 670
BsaXI ACNNNNNCTCC 4 cut(s) 388, 418, 1275, 1305
Bsc4I CCNNNNNNNGG 6 cut(s) 99, 379, 524, 677, 977, 2554
Bse1I ACTGG 9 cut(s) 838, 1199, 1695, 1808, 2040, 2503, 2614, 2774, 2979
Bse3DI GCAATG 2 cut(s) 1067, 2528
BseAI TCCGGA 1 cut(s) 670
BseBI CCWGG 5 cut(s) 100, 360, 426, 1110, 3055
BseCI ATCGAT 1 cut(s) 1030
BseDI CCNNGG 6 cut(s) 425, 529, 936, 1713, 1980, 2098
BseGI GGATG 6 cut(s) 226, 1274, 1738, 1912, 2267, 3229
BseLI CCNNNNNNNGG 6 cut(s) 99, 379, 524, 677, 977, 2554
BseMI GCAATG 2 cut(s) 1067, 2528
BseMII CTCAG 5 cut(s) 1198, 1493, 1880, 1946, 2850
BseNI ACTGG 9 cut(s) 838, 1199, 1695, 1808, 2040, 2503, 2614, 2774, 2979
BseRI GAGGAG 1 cut(s) 941
BseSI GKGCMC 1 cut(s) 1277
BseXI GCAGC 8 cut(s) 34, 325, 328, 1591, 1912, 1912, 2349, 2986
BsgI GTGCAG 2 cut(s) 1748, 2310
BshFI GGCC 7 cut(s) 52, 528, 534, 1275, 1790, 2534, 2558
BshNI GGYRCC 3 cut(s) 1112, 2167, 3050
BshVI ATCGAT 1 cut(s) 1030
BsiHKAI GWGCWC 2 cut(s) 652, 2636
BsiHKCI CYCGRG 3 cut(s) 342, 991, 1073
BsiSI CCGG 4 cut(s) 529, 671, 1592, 1763
BslFI GGGAC 2 cut(s) 654, 2909
BslI CCNNNNNNNGG 6 cut(s) 99, 379, 524, 677, 977, 2554
BsmAI GTCTC 6 cut(s) 425, 568, 619, 1185, 1498, 2267
BsmFI GGGAC 2 cut(s) 654, 2909
BsmI GAATGC 2 cut(s) 850, 3140
BsnI GGCC 7 cut(s) 52, 528, 534, 1275, 1790, 2534, 2558
BsoBI CYCGRG 3 cut(s) 342, 991, 1073
Bsp119I TTCGAA 2 cut(s) 1051, 1523
Bsp120I GGGCCC 1 cut(s) 1273
Bsp1286I GDGCHC 3 cut(s) 652, 1277, 2636
Bsp13I TCCGGA 1 cut(s) 670
Bsp1720I GCTNAGC 1 cut(s) 513
Bsp19I CCATGG 1 cut(s) 1980
BspACI CCGC 6 cut(s) 267, 299, 923, 1683, 1897, 2197
BspANI GGCC 7 cut(s) 52, 528, 534, 1275, 1790, 2534, 2558
BspCNI CTCAG 5 cut(s) 1197, 1494, 1881, 1945, 2849
BspDI ATCGAT 1 cut(s) 1030
BspEI TCCGGA 1 cut(s) 670
BspHI TCATGA 4 cut(s) 75, 1465, 2110, 2692
BspMI ACCTGC 1 cut(s) 1226
BspPI GGATC 9 cut(s) 350, 363, 770, 834, 1485, 1498, 2289, 2393, 2736
BspT104I TTCGAA 2 cut(s) 1051, 1523
BspT107I GGYRCC 3 cut(s) 1112, 2167, 3050
BsrDI GCAATG 2 cut(s) 1067, 2528
BsrI ACTGG 9 cut(s) 838, 1199, 1695, 1808, 2040, 2503, 2614, 2774, 2979
BssECI CCNNGG 6 cut(s) 425, 529, 936, 1713, 1980, 2098
BssSI CACGAG 3 cut(s) 62, 482, 3144
BssT1I CCWWGG 2 cut(s) 1713, 1980
Bst2BI CACGAG 3 cut(s) 62, 482, 3144
Bst2UI CCWGG 5 cut(s) 100, 360, 426, 1110, 3055
Bst4CI ACNGT 5 cut(s) 391, 841, 2102, 2278, 3175
Bst6I CTCTTC 3 cut(s) 41, 861, 2126
BstBI TTCGAA 2 cut(s) 1051, 1523
BstC8I GCNNGC 7 cut(s) 546, 1300, 2085, 2433, 2853, 2908, 3004
BstDEI CTNAG 6 cut(s) 513, 1184, 1502, 1889, 1932, 2836
BstDSI CCRYGG 2 cut(s) 1980, 2098
BstF5I GGATG 6 cut(s) 226, 1274, 1738, 1912, 2267, 3229
BstH2I RGCGCY 1 cut(s) 2744
BstHHI GCGC 4 cut(s) 1304, 2743, 2809, 3187
BstMAI GTCTC 6 cut(s) 425, 568, 619, 1185, 1498, 2267
BstMWI GCNNNNNNNGC 1 cut(s) 2960
BstNI CCWGG 5 cut(s) 100, 360, 426, 1110, 3055
BstNSI RCATGY 1 cut(s) 3246
BstSCI CCNGG 8 cut(s) 98, 358, 424, 528, 1108, 1591, 1761, 3053
BstSFI CTRYAG 1 cut(s) 1914
BstSLI GKGCMC 1 cut(s) 1277
BstV1I GCAGC 8 cut(s) 34, 325, 328, 1591, 1912, 1912, 2349, 2986
BstV2I GAAGAC 4 cut(s) 507, 1160, 2372, 2574
BstX2I RGATCY 7 cut(s) 184, 355, 775, 995, 1490, 2209, 2728
BstXI CCANNNNNNTGG 4 cut(s) 1123, 1867, 2542, 2685
BstYI RGATCY 7 cut(s) 184, 355, 775, 995, 1490, 2209, 2728
Bsu15I ATCGAT 1 cut(s) 1030
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 7 cut(s) 52, 528, 534, 1275, 1790, 2534, 2558
BsuTUI ATCGAT 1 cut(s) 1030
BtgI CCRYGG 2 cut(s) 1980, 2098
BtgZI GCGATG 1 cut(s) 1984
BtrI CACGTC 1 cut(s) 3070
BtsCI GGATG 6 cut(s) 226, 1274, 1738, 1912, 2267, 3229
BtsI GCAGTG 3 cut(s) 136, 2298, 3234
BtsIMutI CAGTG 7 cut(s) 136, 2298, 2383, 2467, 3171, 3187, 3234
BveI ACCTGC 1 cut(s) 1226
Cac8I GCNNGC 7 cut(s) 546, 1300, 2085, 2433, 2853, 2908, 3004
CaiI CAGNNNCTG 1 cut(s) 1803
CciI TCATGA 4 cut(s) 75, 1465, 2110, 2692
CfoI GCGC 4 cut(s) 1304, 2743, 2809, 3187
Cfr13I GGNCC 9 cut(s) 532, 1273, 1274, 1788, 1977, 2532, 2545, 2557, 2869
ClaI ATCGAT 1 cut(s) 1030
Csp6I GTAC 2 cut(s) 831, 1078
CviQI GTAC 2 cut(s) 831, 1078
DdeI CTNAG 6 cut(s) 513, 1184, 1502, 1889, 1932, 2836
DraI TTTAAA 1 cut(s) 946
DraIII CACNNNGTG 2 cut(s) 487, 634
DrdI GACNNNNNNGTC 2 cut(s) 1379, 3074
DseDI GACNNNNNNGTC 2 cut(s) 1379, 3074
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 3 cut(s) 41, 861, 2126
EarI CTCTTC 3 cut(s) 41, 861, 2126
Ecl136II GAGCTC 2 cut(s) 650, 2634
Eco130I CCWWGG 2 cut(s) 1713, 1980
Eco147I AGGCCT 1 cut(s) 52
Eco24I GRGCYC 3 cut(s) 652, 1277, 2636
Eco47I GGWCC 3 cut(s) 1977, 2545, 2869
Eco53kI GAGCTC 2 cut(s) 650, 2634
Eco57I CTGAAG 4 cut(s) 570, 1480, 1493, 2384
Eco88I CYCGRG 3 cut(s) 342, 991, 1073
EcoICRI GAGCTC 2 cut(s) 650, 2634
EcoO109I RGGNCCY 2 cut(s) 532, 1273
EcoRII CCWGG 5 cut(s) 98, 358, 424, 1108, 3053
EcoT14I CCWWGG 2 cut(s) 1713, 1980
EcoT38I GRGCYC 3 cut(s) 652, 1277, 2636
ErhI CCWWGG 2 cut(s) 1713, 1980
FalI AAGNNNNNCTT 2 cut(s) 2199, 2231
FaqI GGGAC 2 cut(s) 654, 2909
FauI CCCGC 1 cut(s) 1676
FauNDI CATATG 2 cut(s) 2395, 2415
Fnu4HI GCNGC 9 cut(s) 23, 317, 339, 1580, 1898, 1901, 1926, 2338, 3000
FokI GGATG 6 cut(s) 233, 1281, 1745, 1919, 2274, 3236
FriOI GRGCYC 3 cut(s) 652, 1277, 2636
Fsp4HI GCNGC 9 cut(s) 23, 317, 339, 1580, 1898, 1901, 1926, 2338, 3000
FspBI CTAG 5 cut(s) 54, 147, 201, 1064, 1206
FspI TGCGCA 1 cut(s) 2808
GlaI GCGC 4 cut(s) 1303, 2742, 2808, 3186
GluI GCNGC 9 cut(s) 23, 317, 339, 1580, 1898, 1901, 1926, 2338, 3000
GsuI CTGGAG 2 cut(s) 765, 1604
HaeII RGCGCY 1 cut(s) 2744
HaeIII GGCC 7 cut(s) 52, 528, 534, 1275, 1790, 2534, 2558
HapII CCGG 4 cut(s) 529, 671, 1592, 1763
HhaI GCGC 4 cut(s) 1304, 2743, 2809, 3187
Hin6I GCGC 4 cut(s) 1302, 2741, 2807, 3185
HinP1I GCGC 4 cut(s) 1302, 2741, 2807, 3185
HincII GTYRAC 3 cut(s) 589, 700, 2391
HindII GTYRAC 3 cut(s) 589, 700, 2391
HindIII AAGCTT 2 cut(s) 1175, 1514
HpaI GTTAAC 1 cut(s) 700
HpaII CCGG 4 cut(s) 529, 671, 1592, 1763
HphI GGTGA 4 cut(s) 44, 499, 782, 945
Hpy166II GTNNAC 5 cut(s) 589, 700, 2098, 2391, 2972
Hpy8I GTNNAC 5 cut(s) 589, 700, 2098, 2391, 2972
HpyCH4III ACNGT 5 cut(s) 391, 841, 2102, 2278, 3175
HpyCH4IV ACGT 3 cut(s) 349, 3069, 3201
HpyF10VI GCNNNNNNNGC 1 cut(s) 2960
HpyF3I CTNAG 6 cut(s) 513, 1184, 1502, 1889, 1932, 2836
HpySE526I ACGT 3 cut(s) 349, 3069, 3201
HspAI GCGC 4 cut(s) 1302, 2741, 2807, 3185
Kpn2I TCCGGA 1 cut(s) 670
KspAI GTTAAC 1 cut(s) 700
LmnI GCTCC 8 cut(s) 410, 647, 1444, 1554, 2236, 2631, 2903, 2951
Lsp1109I GCAGC 8 cut(s) 34, 325, 328, 1591, 1912, 1912, 2349, 2986
MaeI CTAG 5 cut(s) 54, 147, 201, 1064, 1206
MaeII ACGT 3 cut(s) 349, 3069, 3201
MaeIII GTNAC 9 cut(s) 59, 404, 553, 1201, 1394, 1799, 2303, 2794, 3231
MfeI CAATTG 1 cut(s) 26
MflI RGATCY 7 cut(s) 184, 355, 775, 995, 1490, 2209, 2728
MhlI GDGCHC 3 cut(s) 652, 1277, 2636
MlyI GAGTC 5 cut(s) 283, 1091, 1865, 2463, 3084
MmeI TCCRAC 4 cut(s) 198, 435, 2421, 2431
MroI TCCGGA 1 cut(s) 670
MroXI GAANNNNTTC 3 cut(s) 1213, 1770, 2571
MslI CAYNNNNRTG 5 cut(s) 255, 887, 1121, 2430, 2540
MspA1I CMGCKG 3 cut(s) 1046, 1582, 1903
MspI CCGG 4 cut(s) 529, 671, 1592, 1763
MspR9I CCNGG 8 cut(s) 100, 360, 426, 530, 1110, 1593, 1763, 3055
MunI CAATTG 1 cut(s) 26
Mva1269I GAATGC 2 cut(s) 850, 3140
MvaI CCWGG 5 cut(s) 100, 360, 426, 1110, 3055
MwoI GCNNNNNNNGC 1 cut(s) 2960
NciI CCSGG 3 cut(s) 530, 1593, 1763
NcoI CCATGG 1 cut(s) 1980
NdeI CATATG 2 cut(s) 2395, 2415
NmeAIII GCCGAG 3 cut(s) 398, 961, 1816
NmuCI GTSAC 3 cut(s) 59, 2303, 3231
NsbI TGCGCA 1 cut(s) 2808
NspI RCATGY 1 cut(s) 3246
NspV TTCGAA 2 cut(s) 1051, 1523
PaeR7I CTCGAG 2 cut(s) 342, 991
PagI TCATGA 4 cut(s) 75, 1465, 2110, 2692
PceI AGGCCT 1 cut(s) 52
PcsI WCGNNNNNNNCGW 2 cut(s) 578, 3075
PctI GAATGC 2 cut(s) 850, 3140
PdmI GAANNNNTTC 3 cut(s) 1213, 1770, 2571
PflMI CCANNNNNTGG 1 cut(s) 977
PfoI TCCNGGA 1 cut(s) 98
PkrI GCNGC 9 cut(s) 24, 318, 340, 1581, 1899, 1902, 1927, 2339, 3001
PleI GAGTC 5 cut(s) 283, 1091, 1864, 2462, 3083
PpsI GAGTC 5 cut(s) 283, 1091, 1864, 2462, 3083
PshBI ATTAAT 3 cut(s) 1350, 2028, 3129
PsiI TTATAA 1 cut(s) 966
Psp124BI GAGCTC 2 cut(s) 652, 2636
Psp6I CCWGG 5 cut(s) 98, 358, 424, 1108, 3053
PspGI CCWGG 5 cut(s) 98, 358, 424, 1108, 3053
PspOMI GGGCCC 1 cut(s) 1273
PspPI GGNCC 9 cut(s) 532, 1273, 1274, 1788, 1977, 2532, 2545, 2557, 2869
PstNI CAGNNNCTG 1 cut(s) 1803
PsuI RGATCY 7 cut(s) 184, 355, 775, 995, 1490, 2209, 2728
PvuII CAGCTG 3 cut(s) 1046, 1582, 1903
RsaI GTAC 2 cut(s) 832, 1079
RsaNI GTAC 2 cut(s) 831, 1078
RseI CAYNNNNRTG 5 cut(s) 255, 887, 1121, 2430, 2540
SacI GAGCTC 2 cut(s) 652, 2636
SatI GCNGC 9 cut(s) 23, 317, 339, 1580, 1898, 1901, 1926, 2338, 3000
Sau96I GGNCC 9 cut(s) 532, 1273, 1274, 1788, 1977, 2532, 2545, 2557, 2869
SchI GAGTC 5 cut(s) 283, 1091, 1865, 2463, 3084
ScrFI CCNGG 8 cut(s) 100, 360, 426, 530, 1110, 1593, 1763, 3055
SduI GDGCHC 3 cut(s) 652, 1277, 2636
SfcI CTRYAG 1 cut(s) 1914
Sfr274I CTCGAG 2 cut(s) 342, 991
SfuI TTCGAA 2 cut(s) 1051, 1523
SinI GGWCC 3 cut(s) 1977, 2545, 2869
SlaI CTCGAG 2 cut(s) 342, 991
SmiMI CAYNNNNRTG 5 cut(s) 255, 887, 1121, 2430, 2540
SmlI CTYRAG 5 cut(s) 293, 342, 991, 2012, 3195
SmoI CTYRAG 5 cut(s) 293, 342, 991, 2012, 3195
SseBI AGGCCT 1 cut(s) 52
SsiI CCGC 6 cut(s) 267, 299, 923, 1683, 1897, 2197
SspI AATATT 1 cut(s) 621
SspMI CTAG 5 cut(s) 54, 147, 201, 1064, 1206
SstI GAGCTC 2 cut(s) 652, 2636
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 8 cut(s) 98, 358, 424, 528, 1108, 1591, 1761, 3053
StyI CCWWGG 2 cut(s) 1713, 1980
TaaI ACNGT 5 cut(s) 391, 841, 2102, 2278, 3175
TaiI ACGT 3 cut(s) 352, 3072, 3204
TaqI TCGA 8 cut(s) 343, 992, 1030, 1051, 1261, 1523, 1572, 2599
TauI GCSGC 1 cut(s) 1900
TscAI CASTG 7 cut(s) 143, 2298, 2383, 2467, 3178, 3187, 3234
TseFI GTSAC 3 cut(s) 59, 2303, 3231
TseI GCWGC 8 cut(s) 22, 316, 338, 1579, 1900, 1925, 2337, 2999
Tsp45I GTSAC 3 cut(s) 59, 2303, 3231
TspGWI ACGGA 1 cut(s) 423
TspRI CASTG 7 cut(s) 143, 2298, 2383, 2467, 3178, 3187, 3234
Van91I CCANNNNNTGG 1 cut(s) 977
VpaK11BI GGWCC 3 cut(s) 1977, 2545, 2869
VspI ATTAAT 3 cut(s) 1350, 2028, 3129
XapI RAATTY 3 cut(s) 470, 689, 2604
XceI RCATGY 1 cut(s) 3246
XcmI CCANNNNNNNNNTGG 3 cut(s) 1720, 2971, 3061
XhoI CTCGAG 2 cut(s) 342, 991
XmnI GAANNNNTTC 3 cut(s) 1213, 1770, 2571
XspI CTAG 5 cut(s) 54, 147, 201, 1064, 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.