Rorug01G0129000

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004174
Physical Location & Seq
Reverse (-)
21959582 .. 21961275
1694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0129000.1

Sequence Viewer

Length: 1326 bp
ATGGCTATCCTCGATAATACCACTTTCGAAATCATAACCCCATCTCGCTTCACCACCTTCAGCCTCCGCGTCGCCGTTCTCGACTCGCCGCCGACCCACCCCGAGTCGCCGGAATGCTCGTCCCCAAACACCGCCACTCCGACTGGATATTCTCCACCCACTCCGGCCATCTCCAGCTCCCCCGGCATCTCCCGCCTGATCCTCATCGGCGACAGCTCTCACGACTCGCCTCCAGTCTACCGCCGTCCGCTCAAAGACGACGACACGTCGTGTGACGACGAAGTCCTCGGGGTGAGCTTGAAACCTCTCTTTCTTGCTTTATCTCCCAAGTCCAAGTCCTGCTTTAAACACGGCATTCCTGAGATACCCATTTTGAGTTACCAAGATAATTTGATTTCTAGTTTGGTTTTGGAGAAATGCGTTGGGTGTTTGGTTGGTGAAATGGTGGTGGAGGATGTGGAGATTGACTCTGGTGGTGAAGTTTCAAAGAGGGAGTTCAGGAGGCGTCTGAGATTTAAAAGAATGCCCAATTTGATTCAGACAGAAATGCGTATTGTTCCCAAAATGGGTTTTGGTTTGGATTGTGTGGGAATTGGACAAGTTGAGTTTAGGCTGGATGATAGTGTTTTAGTGCACTCTTATTTGGTTCCTATGGTGGCAAGTCTTAGCCTGGCTGCTCCTTATATTCAGGGACAGATTCGAACTGGCGTAAGGCCAAAAGCTTTGTGTTTAGCAGTTGGGGGTGGGGCTTTGCTTGGTTTCTTGAAAACTCAATTGGGTTTTCAGGTTGTGAGAGTGGAAGCCGATGAGGAGGTGCTAAGGGTTTCTAGGCGGTATTTTGGGCTGGACGATGGAGAGCATATCAAAGTTTGTGTTGGAGATGCATTAAAAGTTATTGATAAACTTGCTGGTGCCCGTGAGGTAGAGGTTGGTTGTGACGTGGGCAGTGATAATGATGTTGATACTAAGTTTGATGTGATTATGGTTGATTTGGATTCAAGTGATGCTAGGGATGGTTTAATTGCTCCCCCATTGGAGTTTGTTCGGAAGCATATCCTTTTGTCAGCCAGATCAGTTCTTTCTGATTATGGAATCATAGCTATAAATGTGATTCCTCCAAATACATCATTTTACAGGACATTGATCCATGAGTTTCGAGATGTTTTCAATGAGCTATACGAAATAGATGTGGGAAATGGAGAAAATTTTATTCTTATTGCTGTGGCATCTCCTCTCATGCCGTCTAGTGATTGTGAGAACTGTTTCCTCAGCAAACTAGGAAAAGCCATATCTGGGGCATACTTGAATTCCATAAAGAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009733 GO:0009870 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015267 GO:0015288 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0022803 GO:0022829 GO:0022857 GO:0023052 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045088 GO:0045089 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0055085 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2 Nup96

Protein Analysis

441

Amino Acids

48.12

Weight (kDa)

5.13

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
AccB1I GGYRCC 1 cut(s) 911
AccBSI CCGCTC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 237
AccII CGCG 1 cut(s) 69
AciI CCGC 7 cut(s) 67, 89, 132, 193, 241, 248, 832
AclWI GGATC 2 cut(s) 193, 1138
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 2 cut(s) 1204, 1306
AcuI CTGAAG 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 505
AdeI CACNNNGTG 1 cut(s) 270
AfiI CCNNNNNNNGG 2 cut(s) 566, 1293
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 6 cut(s) 301, 486, 766, 999, 1168, 1306
AhdI GACNNNNNGTC 1 cut(s) 265
AjiI CACGTC 2 cut(s) 267, 940
AjnI CCWGG 1 cut(s) 669
AjuI GAANNNNNNNTTGG 2 cut(s) 758, 790
AluBI AGCT 6 cut(s) 177, 216, 297, 722, 1100, 1174
AluI AGCT 6 cut(s) 177, 216, 297, 722, 1100, 1174
Alw21I GWGCWC 1 cut(s) 636
Alw44I GTGCAC 1 cut(s) 632
AlwI GGATC 2 cut(s) 193, 1138
Ama87I CYCGRG 2 cut(s) 101, 287
AoxI GGCC 2 cut(s) 165, 713
ApaLI GTGCAC 1 cut(s) 632
ApeKI GCWGC 1 cut(s) 674
ApoI RAATTY 2 cut(s) 1204, 1306
Asp700I GAANNNNTTC 1 cut(s) 1262
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 4 cut(s) 43, 304, 449, 488
AsuII TTCGAA 2 cut(s) 27, 700
AvaI CYCGRG 2 cut(s) 101, 287
BaeGI GKGCMC 2 cut(s) 636, 916
BanI GGYRCC 1 cut(s) 911
Bbv12I GWGCWC 1 cut(s) 636
BbvCI CCTCAGC 1 cut(s) 1268
BbvI GCAGC 1 cut(s) 661
BccI CCATC 4 cut(s) 49, 176, 845, 1007
BceAI ACGGC 4 cut(s) 59, 228, 367, 1225
BciT130I CCWGG 1 cut(s) 671
BcnI CCSGG 1 cut(s) 183
BfaI CTAG 6 cut(s) 399, 828, 1008, 1245, 1277, 1324
BglII AGATCT 1 cut(s) 1320
BisI GCNGC 2 cut(s) 89, 675
BlsI GCNGC 2 cut(s) 90, 676
Bme1390I CCNGG 2 cut(s) 183, 671
BmeRI GACNNNNNGTC 1 cut(s) 265
BmeT110I CYCGRG 2 cut(s) 101, 287
BmgBI CACGTC 2 cut(s) 267, 940
BmiI GGNNCC 2 cut(s) 648, 913
BmrFI CCNGG 2 cut(s) 183, 671
BmsI GCATC 4 cut(s) 195, 871, 994, 1235
BplI GAGNNNNNCTC 2 cut(s) 452, 484
BpmI CTGGAG 2 cut(s) 157, 216
Bpu10I CCTNAGC 2 cut(s) 818, 1268
Bpu14I TTCGAA 2 cut(s) 27, 700
BpuMI CCSGG 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 505
BsaJI CCNNGG 2 cut(s) 181, 286
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 2 cut(s) 566, 1293
Bse1I ACTGG 3 cut(s) 148, 233, 709
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 1 cut(s) 671
BseDI CCNNGG 2 cut(s) 181, 286
BseGI GGATG 3 cut(s) 460, 622, 1018
BseJI GATNNNNATC 1 cut(s) 203
BseLI CCNNNNNNNGG 2 cut(s) 566, 1293
BseMII CTCAG 3 cut(s) 351, 500, 1282
BseNI ACTGG 3 cut(s) 148, 233, 709
BseRI GAGGAG 2 cut(s) 824, 1221
BseSI GKGCMC 2 cut(s) 636, 916
BseXI GCAGC 1 cut(s) 661
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 2 cut(s) 167, 715
BshNI GGYRCC 1 cut(s) 911
BsiHKAI GWGCWC 1 cut(s) 636
BsiHKCI CYCGRG 2 cut(s) 101, 287
BsiSI CCGG 3 cut(s) 110, 164, 183
BslFI GGGAC 2 cut(s) 106, 705
BslI CCNNNNNNNGG 2 cut(s) 566, 1293
BsmFI GGGAC 2 cut(s) 106, 705
BsmI GAATGC 3 cut(s) 119, 354, 528
BsnI GGCC 2 cut(s) 167, 715
BsoBI CYCGRG 2 cut(s) 101, 287
Bsp119I TTCGAA 2 cut(s) 27, 700
Bsp1286I GDGCHC 2 cut(s) 636, 916
Bsp143I GATC 4 cut(s) 198, 1070, 1143, 1320
BspACI CCGC 7 cut(s) 67, 89, 132, 193, 241, 248, 832
BspANI GGCC 2 cut(s) 167, 715
BspCNI CTCAG 3 cut(s) 352, 501, 1281
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 648, 913
BspPI GGATC 2 cut(s) 193, 1138
BspT104I TTCGAA 2 cut(s) 27, 700
BspT107I GGYRCC 1 cut(s) 911
BsrBI CCGCTC 1 cut(s) 250
BsrI ACTGG 3 cut(s) 148, 233, 709
BssECI CCNNGG 2 cut(s) 181, 286
BssMI GATC 4 cut(s) 198, 1070, 1143, 1320
BssNI GRCGYC 1 cut(s) 505
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 1 cut(s) 1262
BstACI GRCGYC 1 cut(s) 505
BstBI TTCGAA 2 cut(s) 27, 700
BstDEI CTNAG 6 cut(s) 360, 509, 665, 818, 966, 1268
BstF5I GGATG 3 cut(s) 460, 622, 1018
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 4 cut(s) 201, 1073, 1146, 1323
BstMBI GATC 4 cut(s) 198, 1070, 1143, 1320
BstMWI GCNNNNNNNGC 2 cut(s) 183, 192
BstNI CCWGG 1 cut(s) 671
BstSCI CCNGG 2 cut(s) 181, 669
BstSLI GKGCMC 2 cut(s) 636, 916
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 661
BstX2I RGATCY 1 cut(s) 1320
BstYI RGATCY 1 cut(s) 1320
BsuRI GGCC 2 cut(s) 167, 715
BtrI CACGTC 2 cut(s) 267, 940
BtsCI GGATG 3 cut(s) 460, 622, 1018
BtsI GCAGTG 1 cut(s) 952
BtsIMutI CAGTG 1 cut(s) 952
CseI GACGC 2 cut(s) 58, 494
CviAII CATG 2 cut(s) 1148, 1237
DdeI CTNAG 6 cut(s) 360, 509, 665, 818, 966, 1268
DpnI GATC 4 cut(s) 200, 1072, 1145, 1322
DpnII GATC 4 cut(s) 198, 1070, 1143, 1320
DraI TTTAAA 2 cut(s) 346, 517
DraIII CACNNNGTG 1 cut(s) 270
DrdI GACNNNNNNGTC 1 cut(s) 281
DriI GACNNNNNGTC 1 cut(s) 265
DseDI GACNNNNNNGTC 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 165
Eam1105I GACNNNNNGTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 43
Eco88I CYCGRG 2 cut(s) 101, 287
EcoRI GAATTC 1 cut(s) 1306
EcoRII CCWGG 1 cut(s) 669
EcoT22I ATGCAT 1 cut(s) 886
FaeI CATG 2 cut(s) 1151, 1240
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 2 cut(s) 106, 705
FatI CATG 2 cut(s) 1147, 1236
FauI CCCGC 1 cut(s) 200
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 89, 675
FokI GGATG 3 cut(s) 467, 629, 1025
Fsp4HI GCNGC 2 cut(s) 89, 675
FspBI CTAG 6 cut(s) 399, 828, 1008, 1245, 1277, 1324
GluI GCNGC 2 cut(s) 89, 675
GsuI CTGGAG 2 cut(s) 157, 216
HaeIII GGCC 2 cut(s) 167, 715
HapII CCGG 3 cut(s) 110, 164, 183
HgaI GACGC 2 cut(s) 58, 494
Hin1I GRCGYC 1 cut(s) 505
Hin1II CATG 2 cut(s) 1151, 1240
HindIII AAGCTT 1 cut(s) 720
HinfI GANTC 9 cut(s) 83, 104, 224, 467, 535, 697, 995, 1092, 1111
HpaII CCGG 3 cut(s) 110, 164, 183
HphI GGTGA 4 cut(s) 43, 304, 449, 488
Hpy166II GTNNAC 2 cut(s) 238, 634
Hpy188I TCNGA 5 cut(s) 141, 510, 540, 1047, 1084
Hpy188III TCNNGA 6 cut(s) 80, 221, 359, 499, 763, 1157
Hpy8I GTNNAC 2 cut(s) 238, 634
Hpy99I CGWCG 4 cut(s) 74, 263, 271, 281
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 1262
HpyCH4IV ACGT 2 cut(s) 266, 939
HpyCH4V TGCA 2 cut(s) 634, 884
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 192
HpyF3I CTNAG 6 cut(s) 360, 509, 665, 818, 966, 1268
HpySE526I ACGT 2 cut(s) 266, 939
Hsp92I GRCGYC 1 cut(s) 505
Hsp92II CATG 2 cut(s) 1151, 1240
Kzo9I GATC 4 cut(s) 198, 1070, 1143, 1320
LmnI GCTCC 3 cut(s) 182, 682, 1030
Lsp1109I GCAGC 1 cut(s) 661
LweI GCATC 4 cut(s) 195, 871, 994, 1235
MaeI CTAG 6 cut(s) 399, 828, 1008, 1245, 1277, 1324
MaeII ACGT 2 cut(s) 266, 939
MaeIII GTNAC 3 cut(s) 272, 377, 935
MalI GATC 4 cut(s) 200, 1072, 1145, 1322
MbiI CCGCTC 1 cut(s) 250
MboI GATC 4 cut(s) 198, 1070, 1143, 1320
MfeI CAATTG 1 cut(s) 773
MflI RGATCY 1 cut(s) 1320
MhlI GDGCHC 2 cut(s) 636, 916
MluCI AATT 7 cut(s) 388, 529, 591, 773, 1020, 1204, 1306
MlyI GAGTC 4 cut(s) 77, 113, 218, 461
MmeI TCCRAC 2 cut(s) 164, 856
Mph1103I ATGCAT 1 cut(s) 886
MroXI GAANNNNTTC 1 cut(s) 1262
MseI TTAA 4 cut(s) 345, 516, 887, 1019
MspI CCGG 3 cut(s) 110, 164, 183
MspR9I CCNGG 2 cut(s) 183, 671
MunI CAATTG 1 cut(s) 773
Mva1269I GAATGC 3 cut(s) 119, 354, 528
MvaI CCWGG 1 cut(s) 671
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 183, 192
NciI CCSGG 1 cut(s) 183
NdeII GATC 4 cut(s) 198, 1070, 1143, 1320
NlaIII CATG 2 cut(s) 1151, 1240
NlaIV GGNNCC 2 cut(s) 648, 913
NmuCI GTSAC 2 cut(s) 272, 935
NsiI ATGCAT 1 cut(s) 886
NspV TTCGAA 2 cut(s) 27, 700
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 3 cut(s) 119, 354, 528
PdmI GAANNNNTTC 1 cut(s) 1262
PfeI GAWTC 5 cut(s) 535, 697, 995, 1092, 1111
PflFI GACNNNGTC 1 cut(s) 281
PkrI GCNGC 2 cut(s) 90, 676
PleI GAGTC 4 cut(s) 77, 112, 218, 461
PpsI GAGTC 4 cut(s) 77, 112, 218, 461
Psp6I CCWGG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 2 cut(s) 648, 913
PsuI RGATCY 1 cut(s) 1320
PsyI GACNNNGTC 1 cut(s) 281
SaqAI TTAA 4 cut(s) 345, 516, 887, 1019
SatI GCNGC 2 cut(s) 89, 675
Sau3AI GATC 4 cut(s) 198, 1070, 1143, 1320
SchI GAGTC 4 cut(s) 77, 113, 218, 461
ScrFI CCNGG 2 cut(s) 183, 671
SduI GDGCHC 2 cut(s) 636, 916
SfaNI GCATC 4 cut(s) 195, 871, 994, 1235
SfuI TTCGAA 2 cut(s) 27, 700
Sse9I AATT 7 cut(s) 388, 529, 591, 773, 1020, 1204, 1306
SsiI CCGC 7 cut(s) 67, 89, 132, 193, 241, 248, 832
SspMI CTAG 6 cut(s) 399, 828, 1008, 1245, 1277, 1324
StyD4I CCNGG 2 cut(s) 181, 669
TaaI ACNGT 1 cut(s) 1262
TaiI ACGT 2 cut(s) 269, 942
TaqI TCGA 5 cut(s) 12, 27, 81, 700, 1156
TasI AATT 7 cut(s) 388, 529, 591, 773, 1020, 1204, 1306
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 5 cut(s) 535, 697, 995, 1092, 1111
Tru1I TTAA 4 cut(s) 345, 516, 887, 1019
Tru9I TTAA 4 cut(s) 345, 516, 887, 1019
TscAI CASTG 1 cut(s) 952
TseFI GTSAC 2 cut(s) 272, 935
TseI GCWGC 1 cut(s) 674
Tsp45I GTSAC 2 cut(s) 272, 935
TspRI CASTG 1 cut(s) 952
Tth111I GACNNNGTC 1 cut(s) 281
VneI GTGCAC 1 cut(s) 632
XapI RAATTY 2 cut(s) 1204, 1306
XmiI GTMKAC 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 1262
XspI CTAG 6 cut(s) 399, 828, 1008, 1245, 1277, 1324
Zsp2I ATGCAT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.