Rw1G012230

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004174
Physical Location & Seq
Forward (+)
27348446 .. 27354956
6511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012230.1

Sequence Viewer

Length: 3093 bp
ATGAGGAAAACACAATGTAGATCTATTGATGCTGGAACTCCGAATTCACAAATTCGAGGTCAGCAGAAAAAAAGAAGGACCGGAGTTTCGTTGTGCGAGACTTTTAGTAATGGCAATGTCGCTCCGTTACACTACCTACCAACTCTTGAAGCAGCTGATTACTATGTGCAGCCTTCTTTGAAGGAACTGGCTGCTCGAGAACGTATGGATCCTGGTTATTCTACCCGAGTTTTGGACTTTACGGTTGGGAGGTTTGGTTATGGATCTGTCAAGTATCCTGGGGAGACTGATGTTAGGTGTTTAGAATTAGATAGAATTGTCAAGTTCCGCAGGCATGAGGTGATTGTATATGAAGATGAGAGTGCCAAGCCTTTGGTTGGCCAGGGCCTTAACAAGCCTGCTGAAGTAACTTTGATGCTACAAACAAGGGTATCGTGTGTTGACCAGAGACAGAAAGAGAATATCGTGAAAATATTGAGACAAAGTGTGGAGGGACAAGGAGCTCATTTTGTTTCGTTTAATCCAGAAAATGGGGAATGGAAATTCTTTGTTAACCATTTTAGCAGATTTGGGTTGACTGAAGAAGATGAAGAAGATATGATGATGGAAGATACTGCTGTAGCTGAAGATCCTCCGGAATTGAACCATGATGAGATCTCTGATACTGATGAAGAAAACCAAATGGATCCTACTGGAATTGTGCTCTCGCATTCTCTTCCTGCTCATCTTGGGCTTGACCCCATCAAGATGCAAGAAATGAGAATGTTGATGTTTTCTGATTTGGATGAGGAAGCCGAGGATATGAAAGAATTACCTGCACATTATAATCCATCATTTGGTAAAGAATACTCAAGATCTCCTTTAGAAAATGCTCAAAGGATGAGTTATCGATCTACTCCACCAGCCGTGCGAAAGACCCCTCTAGCATTGCTTGAGTACAAGCATGGTAGTTTTGACTCAAACTCTCCTGGAGCCATTCTAATGGCCCAGGAAAATAAAGCCTTGCCATTGAAGACACTAAAAGAAGGTTTTAAGCTTGATCTCAGTAGTGAAACACCAGCAACTAGAAAAGATTCTCGCAACATAGTTGATGCAGGTTTGTTAATGGGTAGGTCTTTTCGAGTAGGATGGGGCCCAAATGGAATTCTTGTCCATGCTGGCACACCAATAGGCAGTAATGGTTCCCAAAGGGTGCTGTCATCTGTAATTAATATAGAGAAGGTTGCTATTGACAATGTTGTCAGAGATAAAAATAACAAGGTTAGAGCAGAACTTGTTGAAACGGCTATCACTTCTCCATTGGAGCTTCACAAGGGACTGTTTCATGAAACAAAAGAAGTTGAAGTTGGATCCTTCAGTCTGAGACTTCAGAAACTTGTCTCGAATCGTATTATTGAGAGGCAGCTGGAGGTTCCTGGTTTATCTTCCTCTGCATGTTTGGTTTTGCCACATCAAATTATGATTTGGGAATTGATAAAAGTTCTTTTCTCTGAAAGGGAAAATGGCGAGAAAATGGGATCTTTTGGTGCTGATGATGAGGTAGAAATGGTGCAGGATGAGAAGCTCCCTTCACAGGAAACTGACCCGGAAGCATTACCTCTAATTAGGAGGGCCGAGTTCAGTTACTGGTTGCAAGAAAATGTGCACCATCGAGTAGAAGAAATCATCTCCTTGAATGAGTCCAATTATCTGCAATCCATATTATTACTTCTGAGTGGGCGGCAGCTGGATGAAGCTGTGGAACTGGCTGCTTCTCAGGGAGACGTGAGATTGGCTTGTTTGTTAAGTCAGTCTGGTGGGTCCATAGTTAATCGTTCTGACATTGCACAGCAGCTTGAGCTTTGGAGGATCAATGGACTGGATTTCAGTTTCATTGAGAAAGATAGGATAAGGCTTTATGAGTTGCTTGCGGGTAATGTCCACGGTGCTTTTCATGATATTGAAGTTGATTGGAAGAGGTTTCTTGGGTTATTGATGTGGTATCACTTACCACCTAATATTCCATTACCCATTGTTTTCCGCACATATCATGATCTTCTTAATGAGAATAAGGCTCCATATCCTGTTCCTGTTTACATGGATGGACGTGTAGAAGAGACTGTGGATCGGAGTGCAGAGAAACGTTATGACATATCATATTACCTTATGATGCTACATGGAAGTGAAGATAGTGAAGTTGATTTCCTGAAGACCATGTTCAGTGCTTTCTCGTCAACATATGATCCACTTGATTACCATATGATCTGGCATCAGCGTGCTGTGTTGGAAGCAGTTGGGGTCATCAGTGCCAATGATCTTCATGTTCTTGACATGGGATTTGTTTCCCAGTTGTTGTGTCTTGGGCAATGTCATTGGGCCATCTATGTGGTCCTTCACATGGCCCATTGTGAAGACTTTCCATATCTTCATGCTAATCTTATTCGGGAAATTTTGTTCCAATATTGTGATTCTTGGAGCTCACAAATATCACAACGCCAATTCATTGAGGACTTGGGTATTCCTAAAGCATGGCTTCATGAGGCTATGGCAGTTTATTTCAATTATTATGGGGATCTTTCAAAGGCACTTGAACACTTCATTGAATGTGCAAACTGGCAGAAAGCGCATTCTATTTTCGTAACTTCTGTTGCTCACACATTATTCTTGTCAGCCAAACACTCAGAGATATGGAGGCTAGCAACTTCCATGGAGGACCACAAATCAGAAATTGAAAATTGGGACTTGGGAGCTGGCATCTACATTTCATTCTATCTAACAAGAAGTTCATTGCAGGGAGCTGACGATGCCATGAGTGAACTGGGTTCTGTTGAAAGCAAAAATGCTGCTTCCAGAGAGTTTCTTGGTCAGTTAAACTTGTCTTTGGCTGTTTGGGGTGCCAAGCTACCAATGGATGTGAGAGTCGTCTATTCGAAGATGGCGGATGAAATATGCAACTTGCTTTTGTCTGATATTAGCGAGGGCCCAACACGAGATGTTCAGTTAAGTTGCTTTGACACCGTTTTCAGTGCGCCCATACCTCAGGACCTTCGCTCAAATCATTTGCAAGATGTAGTGTCTCTCTTCACATGCTTTCTATCCGAAGTTGCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009733 GO:0009870 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015267 GO:0015288 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0022803 GO:0022829 GO:0022857 GO:0023052 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045088 GO:0045089 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0055085 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2 Nup96

Protein Analysis

1030

Amino Acids

116.73

Weight (kDa)

5.12

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoporin2 PF04096 52 - 192 1.4e-38 Nup98-96 autopeptidase S59
Nup96 PF12110 566 - 845 6.4e-76 Nuclear protein 96
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 825
AasI GACNNNNNNGTC 1 cut(s) 1238
Acc36I ACCTGC 2 cut(s) 823, 1085
AccB1I GGYRCC 1 cut(s) 2873
AccB7I CCANNNNNTGG 2 cut(s) 530, 836
AccIII TCCGGA 1 cut(s) 634
AciI CCGC 5 cut(s) 328, 1720, 1910, 2020, 2918
AclI AACGTT 1 cut(s) 2122
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 5 cut(s) 43, 51, 542, 1143, 2427
AcuI CTGAAG 6 cut(s) 423, 600, 645, 1339, 1352, 2207
AfaI GTAC 1 cut(s) 938
AfiI CCNNNNNNNGG 6 cut(s) 232, 377, 530, 836, 1573, 2377
AflIII ACRYGT 1 cut(s) 2086
AjiI CACGTC 2 cut(s) 1765, 2087
AjnI CCWGG 6 cut(s) 211, 277, 381, 967, 987, 1414
AjuI GAANNNNNNNTTGG 2 cut(s) 1329, 1361
AloI GAACNNNNNNTCC 2 cut(s) 2417, 2449
Alw21I GWGCWC 4 cut(s) 505, 705, 1647, 2459
Alw26I GTCTC 9 cut(s) 92, 278, 442, 472, 1357, 1384, 1755, 2090, 3060
Alw44I GTGCAC 1 cut(s) 1643
AlwNI CAGNNNCTG 1 cut(s) 1626
Ama87I CYCGRG 2 cut(s) 195, 225
Aor13HI TCCGGA 1 cut(s) 634
AoxI GGCC 8 cut(s) 379, 385, 984, 1132, 1611, 2355, 2379, 2959
ApaI GGGCCC 2 cut(s) 1136, 2963
ApaLI GTGCAC 1 cut(s) 1643
ApeKI GCWGC 8 cut(s) 152, 169, 191, 1402, 1723, 1748, 1831, 2822
ApoI RAATTY 5 cut(s) 43, 51, 542, 1143, 2427
ArsI GACNNNNNNTTYG 6 cut(s) 43, 70, 75, 102, 2300, 2332
AseI ATTAAT 1 cut(s) 1209
Asp700I GAANNNNTTC 2 cut(s) 1072, 2394
AspLEI GCGC 2 cut(s) 2605, 3010
AsuC2I CCSGG 1 cut(s) 1586
AsuHPI GGTGA 1 cut(s) 352
AsuII TTCGAA 1 cut(s) 2909
AsuNHI GCTAGC 1 cut(s) 2674
AvaI CYCGRG 2 cut(s) 195, 225
AvaII GGWCC 5 cut(s) 78, 1800, 2368, 2692, 3022
AxyI CCTNAGG 1 cut(s) 3018
BaeGI GKGCMC 3 cut(s) 1136, 1647, 2963
BaeI ACNNNNGTAYC 4 cut(s) 414, 447, 603, 636
BalI TGGCCA 1 cut(s) 381
BamHI GGATCC 3 cut(s) 208, 685, 1349
BanI GGYRCC 1 cut(s) 2873
BanII GRGCYC 4 cut(s) 505, 1136, 2459, 2963
BauI CACGAG 1 cut(s) 2967
BbsI GAAGAC 3 cut(s) 1019, 2195, 2397
Bbv12I GWGCWC 4 cut(s) 505, 705, 1647, 2459
BbvI GCAGC 8 cut(s) 164, 178, 181, 1414, 1735, 1735, 1843, 2809
BccI CCATC 8 cut(s) 598, 749, 838, 1122, 1656, 2075, 2366, 2908
BceAI ACGGC 2 cut(s) 890, 1299
BciT130I CCWGG 6 cut(s) 213, 279, 383, 969, 989, 1416
BciVI GTATCC 1 cut(s) 285
BcnI CCSGG 1 cut(s) 1586
BcoDI GTCTC 9 cut(s) 92, 278, 442, 472, 1357, 1384, 1755, 2090, 3060
BfaI CTAG 3 cut(s) 923, 1065, 2675
BfmI CTRYAG 1 cut(s) 618
BfuAI ACCTGC 2 cut(s) 823, 1085
BfuI GTATCC 1 cut(s) 285
BglII AGATCT 3 cut(s) 20, 654, 854
BisI GCNGC 9 cut(s) 153, 170, 192, 1403, 1721, 1724, 1749, 1832, 2823
BlsI GCNGC 9 cut(s) 154, 171, 193, 1404, 1722, 1725, 1750, 1833, 2824
Bme1390I CCNGG 7 cut(s) 213, 279, 383, 969, 989, 1416, 1586
Bme18I GGWCC 5 cut(s) 78, 1800, 2368, 2692, 3022
BmeT110I CYCGRG 2 cut(s) 195, 225
BmgBI CACGTC 2 cut(s) 1765, 2087
BmrFI CCNGG 7 cut(s) 213, 279, 383, 969, 989, 1416, 1586
BmrI ACTGGG 2 cut(s) 2320, 2807
BmsI GCATC 8 cut(s) 19, 405, 738, 1081, 2139, 2257, 2742, 2773
BmtI GCTAGC 1 cut(s) 2678
BmuI ACTGGG 2 cut(s) 2320, 2807
BpiI GAAGAC 3 cut(s) 1019, 2195, 2397
BpmI CTGGAG 2 cut(s) 990, 1427
Bpu14I TTCGAA 1 cut(s) 2909
BpuEI CTTGAG 3 cut(s) 835, 953, 1856
BpuMI CCSGG 1 cut(s) 1586
Bsa29I ATCGAT 1 cut(s) 889
BsaJI CCNNGG 6 cut(s) 278, 382, 795, 987, 1921, 2685
BsaWI WCCGGW 2 cut(s) 80, 634
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 6 cut(s) 232, 377, 530, 836, 1573, 2377
Bse1I ACTGG 8 cut(s) 192, 697, 1631, 1749, 1863, 2326, 2597, 2802
Bse21I CCTNAGG 1 cut(s) 3018
Bse3DI GCAATG 5 cut(s) 121, 926, 1821, 2351, 2765
BseAI TCCGGA 1 cut(s) 634
BseBI CCWGG 6 cut(s) 213, 279, 383, 969, 989, 1416
BseCI ATCGAT 1 cut(s) 889
BseDI CCNNGG 6 cut(s) 278, 382, 795, 987, 1921, 2685
BseGI GGATG 8 cut(s) 790, 885, 1133, 1561, 1735, 2086, 2896, 2926
BseLI CCNNNNNNNGG 6 cut(s) 232, 377, 530, 836, 1573, 2377
BseMI GCAATG 5 cut(s) 121, 926, 1821, 2351, 2765
BseMII CTCAG 6 cut(s) 1057, 1352, 1703, 1769, 2673, 3032
BseNI ACTGG 8 cut(s) 192, 697, 1631, 1749, 1863, 2326, 2597, 2802
BseSI GKGCMC 3 cut(s) 1136, 1647, 2963
BseXI GCAGC 8 cut(s) 164, 178, 181, 1414, 1735, 1735, 1843, 2809
BsgI GTGCAG 4 cut(s) 188, 801, 1571, 2133
BshFI GGCC 8 cut(s) 381, 387, 986, 1134, 1613, 2357, 2381, 2961
BshNI GGYRCC 1 cut(s) 2873
BshVI ATCGAT 1 cut(s) 889
BsiHKAI GWGCWC 4 cut(s) 505, 705, 1647, 2459
BsiHKCI CYCGRG 2 cut(s) 195, 225
BsiSI CCGG 3 cut(s) 81, 635, 1586
BslFI GGGAC 3 cut(s) 507, 1329, 2732
BslI CCNNNNNNNGG 6 cut(s) 232, 377, 530, 836, 1573, 2377
BsmAI GTCTC 9 cut(s) 92, 278, 442, 472, 1357, 1384, 1755, 2090, 3060
BsmBI CGTCTC 1 cut(s) 1755
BsmFI GGGAC 3 cut(s) 507, 1329, 2732
BsmI GAATGC 2 cut(s) 709, 2605
BsnI GGCC 8 cut(s) 381, 387, 986, 1134, 1613, 2357, 2381, 2961
BsoBI CYCGRG 2 cut(s) 195, 225
Bsp119I TTCGAA 1 cut(s) 2909
Bsp120I GGGCCC 2 cut(s) 1132, 2959
Bsp1286I GDGCHC 6 cut(s) 505, 705, 1136, 1647, 2459, 2963
Bsp13I TCCGGA 1 cut(s) 634
Bsp19I CCATGG 1 cut(s) 2685
BspACI CCGC 5 cut(s) 328, 1720, 1910, 2020, 2918
BspANI GGCC 8 cut(s) 381, 387, 986, 1134, 1613, 2357, 2381, 2961
BspCNI CTCAG 6 cut(s) 1056, 1353, 1704, 1768, 2672, 3031
BspDI ATCGAT 1 cut(s) 889
BspEI TCCGGA 1 cut(s) 634
BspHI TCATGA 4 cut(s) 1324, 1933, 2029, 2515
BspMI ACCTGC 2 cut(s) 823, 1085
BspOI GCTAGC 1 cut(s) 2678
BspT104I TTCGAA 1 cut(s) 2909
BspT107I GGYRCC 1 cut(s) 2873
BsrDI GCAATG 5 cut(s) 121, 926, 1821, 2351, 2765
BsrI ACTGG 8 cut(s) 192, 697, 1631, 1749, 1863, 2326, 2597, 2802
BssECI CCNNGG 6 cut(s) 278, 382, 795, 987, 1921, 2685
BssSI CACGAG 1 cut(s) 2967
BssT1I CCWWGG 1 cut(s) 2685
Bst2BI CACGAG 1 cut(s) 2967
Bst2UI CCWGG 6 cut(s) 213, 279, 383, 969, 989, 1416
Bst4CI ACNGT 5 cut(s) 244, 1320, 1925, 2101, 2998
Bst6I CTCTTC 4 cut(s) 720, 1949, 2088, 3065
BstBI TTCGAA 1 cut(s) 2909
BstC8I GCNNGC 7 cut(s) 332, 399, 1159, 1908, 2256, 2676, 2731
BstDEI CTNAG 6 cut(s) 1043, 1361, 1712, 1755, 2659, 3018
BstDSI CCRYGG 2 cut(s) 1921, 2685
BstF5I GGATG 8 cut(s) 790, 885, 1133, 1561, 1735, 2086, 2896, 2926
BstHHI GCGC 2 cut(s) 2605, 3010
BstMAI GTCTC 9 cut(s) 92, 278, 442, 472, 1357, 1384, 1755, 2090, 3060
BstMWI GCNNNNNNNGC 3 cut(s) 1837, 2602, 2783
BstNI CCWGG 6 cut(s) 213, 279, 383, 969, 989, 1416
BstNSI RCATGY 2 cut(s) 1437, 3069
BstSCI CCNGG 7 cut(s) 211, 277, 381, 967, 987, 1414, 1584
BstSFI CTRYAG 1 cut(s) 618
BstSLI GKGCMC 3 cut(s) 1136, 1647, 2963
BstV1I GCAGC 8 cut(s) 164, 178, 181, 1414, 1735, 1735, 1843, 2809
BstV2I GAAGAC 3 cut(s) 1019, 2195, 2397
BstXI CCANNNNNNTGG 3 cut(s) 373, 982, 2365
Bsu15I ATCGAT 1 cut(s) 889
Bsu36I CCTNAGG 1 cut(s) 3018
BsuI GTATCC 1 cut(s) 285
BsuRI GGCC 8 cut(s) 381, 387, 986, 1134, 1613, 2357, 2381, 2961
BsuTUI ATCGAT 1 cut(s) 889
BtgI CCRYGG 2 cut(s) 1921, 2685
BtrI CACGTC 2 cut(s) 1765, 2087
BtsCI GGATG 8 cut(s) 790, 885, 1133, 1561, 1735, 2086, 2896, 2926
BtsIMutI CAGTG 3 cut(s) 2206, 2290, 3010
BveI ACCTGC 2 cut(s) 823, 1085
Cac8I GCNNGC 7 cut(s) 332, 399, 1159, 1908, 2256, 2676, 2731
CaiI CAGNNNCTG 1 cut(s) 1626
CciI TCATGA 4 cut(s) 1324, 1933, 2029, 2515
CfoI GCGC 2 cut(s) 2605, 3010
ClaI ATCGAT 1 cut(s) 889
Csp6I GTAC 1 cut(s) 937
CviQI GTAC 1 cut(s) 937
DdeI CTNAG 6 cut(s) 1043, 1361, 1712, 1755, 2659, 3018
DrdI GACNNNNNNGTC 1 cut(s) 1238
DseDI GACNNNNNNGTC 1 cut(s) 1238
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 4 cut(s) 720, 1949, 2088, 3065
EarI CTCTTC 4 cut(s) 720, 1949, 2088, 3065
EciI GGCGGA 1 cut(s) 2933
Ecl136II GAGCTC 2 cut(s) 503, 2457
Eco130I CCWWGG 1 cut(s) 2685
Eco24I GRGCYC 4 cut(s) 505, 1136, 2459, 2963
Eco47I GGWCC 5 cut(s) 78, 1800, 2368, 2692, 3022
Eco53kI GAGCTC 2 cut(s) 503, 2457
Eco57I CTGAAG 6 cut(s) 423, 600, 645, 1339, 1352, 2207
Eco81I CCTNAGG 1 cut(s) 3018
Eco88I CYCGRG 2 cut(s) 195, 225
EcoICRI GAGCTC 2 cut(s) 503, 2457
EcoO109I RGGNCCY 4 cut(s) 385, 1132, 2959, 3022
EcoRI GAATTC 2 cut(s) 43, 1143
EcoRII CCWGG 6 cut(s) 211, 277, 381, 967, 987, 1414
EcoT14I CCWWGG 1 cut(s) 2685
EcoT38I GRGCYC 4 cut(s) 505, 1136, 2459, 2963
ErhI CCWWGG 1 cut(s) 2685
Esp3I CGTCTC 1 cut(s) 1755
FalI AAGNNNNNCTT 4 cut(s) 844, 876, 2496, 2528
FaqI GGGAC 3 cut(s) 507, 1329, 2732
FauI CCCGC 1 cut(s) 1903
FauNDI CATATG 2 cut(s) 2218, 2238
Fnu4HI GCNGC 9 cut(s) 153, 170, 192, 1403, 1721, 1724, 1749, 1832, 2823
FokI GGATG 8 cut(s) 797, 892, 1140, 1568, 1742, 2093, 2903, 2933
FriOI GRGCYC 4 cut(s) 505, 1136, 2459, 2963
Fsp4HI GCNGC 9 cut(s) 153, 170, 192, 1403, 1721, 1724, 1749, 1832, 2823
FspBI CTAG 3 cut(s) 923, 1065, 2675
GlaI GCGC 2 cut(s) 2604, 3009
GluI GCNGC 9 cut(s) 153, 170, 192, 1403, 1721, 1724, 1749, 1832, 2823
GsuI CTGGAG 2 cut(s) 990, 1427
HaeIII GGCC 8 cut(s) 381, 387, 986, 1134, 1613, 2357, 2381, 2961
HapII CCGG 3 cut(s) 81, 635, 1586
HhaI GCGC 2 cut(s) 2605, 3010
Hin6I GCGC 2 cut(s) 2603, 3008
HinP1I GCGC 2 cut(s) 2603, 3008
HincII GTYRAC 4 cut(s) 442, 553, 576, 2214
HindII GTYRAC 4 cut(s) 442, 553, 576, 2214
HindIII AAGCTT 1 cut(s) 1034
HinfI GANTC 6 cut(s) 956, 1073, 1384, 1679, 2447, 2898
HpaI GTTAAC 1 cut(s) 553
HpaII CCGG 3 cut(s) 81, 635, 1586
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 8 cut(s) 442, 553, 576, 1645, 1921, 2074, 2214, 2795
Hpy8I GTNNAC 8 cut(s) 442, 553, 576, 1645, 1921, 2074, 2214, 2795
HpyAV CCTTC 9 cut(s) 69, 175, 183, 1019, 1213, 1363, 1578, 2381, 3035
HpyCH4III ACNGT 5 cut(s) 244, 1320, 1925, 2101, 2998
HpyCH4IV ACGT 4 cut(s) 202, 1764, 2086, 2122
HpyF10VI GCNNNNNNNGC 3 cut(s) 1837, 2602, 2783
HpyF3I CTNAG 6 cut(s) 1043, 1361, 1712, 1755, 2659, 3018
HpySE526I ACGT 4 cut(s) 202, 1764, 2086, 2122
HspAI GCGC 2 cut(s) 2603, 3008
Kpn2I TCCGGA 1 cut(s) 634
KspAI GTTAAC 1 cut(s) 553
LmnI GCTCC 9 cut(s) 127, 500, 971, 1303, 1569, 2059, 2454, 2726, 2774
Lsp1109I GCAGC 8 cut(s) 164, 178, 181, 1414, 1735, 1735, 1843, 2809
LweI GCATC 8 cut(s) 19, 405, 738, 1081, 2139, 2257, 2742, 2773
MaeI CTAG 3 cut(s) 923, 1065, 2675
MaeII ACGT 4 cut(s) 202, 1764, 2086, 2122
MaeIII GTNAC 4 cut(s) 126, 406, 1622, 2617
MhlI GDGCHC 6 cut(s) 505, 705, 1136, 1647, 2459, 2963
MlsI TGGCCA 1 cut(s) 381
MluNI TGGCCA 1 cut(s) 381
MlyI GAGTC 3 cut(s) 950, 1688, 2907
MmeI TCCRAC 2 cut(s) 1327, 2244
Mox20I TGGCCA 1 cut(s) 381
MroI TCCGGA 1 cut(s) 634
MroXI GAANNNNTTC 2 cut(s) 1072, 2394
MscI TGGCCA 1 cut(s) 381
MslI CAYNNNNRTG 5 cut(s) 746, 980, 2160, 2253, 2363
Msp20I TGGCCA 1 cut(s) 381
MspA1I CMGCKG 3 cut(s) 155, 1405, 1726
MspI CCGG 3 cut(s) 81, 635, 1586
MspR9I CCNGG 7 cut(s) 213, 279, 383, 969, 989, 1416, 1586
Mva1269I GAATGC 2 cut(s) 709, 2605
MvaI CCWGG 6 cut(s) 213, 279, 383, 969, 989, 1416
MwoI GCNNNNNNNGC 3 cut(s) 1837, 2602, 2783
NciI CCSGG 1 cut(s) 1586
NcoI CCATGG 1 cut(s) 2685
NdeI CATATG 2 cut(s) 2218, 2238
NheI GCTAGC 1 cut(s) 2674
NmeAIII GCCGAG 2 cut(s) 820, 1639
NspI RCATGY 2 cut(s) 1437, 3069
NspV TTCGAA 1 cut(s) 2909
PaeR7I CTCGAG 1 cut(s) 195
PagI TCATGA 4 cut(s) 1324, 1933, 2029, 2515
PctI GAATGC 2 cut(s) 709, 2605
PdmI GAANNNNTTC 2 cut(s) 1072, 2394
PfeI GAWTC 3 cut(s) 1073, 1384, 2447
PflMI CCANNNNNTGG 2 cut(s) 530, 836
PfoI TCCNGGA 1 cut(s) 967
PkrI GCNGC 9 cut(s) 154, 171, 193, 1404, 1722, 1725, 1750, 1833, 2824
PleI GAGTC 3 cut(s) 950, 1687, 2906
PpsI GAGTC 3 cut(s) 950, 1687, 2906
PpuMI RGGWCCY 1 cut(s) 3022
PshBI ATTAAT 1 cut(s) 1209
PsiI TTATAA 1 cut(s) 825
Psp124BI GAGCTC 2 cut(s) 505, 2459
Psp1406I AACGTT 1 cut(s) 2122
Psp5II RGGWCCY 1 cut(s) 3022
Psp6I CCWGG 6 cut(s) 211, 277, 381, 967, 987, 1414
PspGI CCWGG 6 cut(s) 211, 277, 381, 967, 987, 1414
PspOMI GGGCCC 2 cut(s) 1132, 2959
PspPPI RGGWCCY 1 cut(s) 3022
PstNI CAGNNNCTG 1 cut(s) 1626
PvuII CAGCTG 3 cut(s) 155, 1405, 1726
RsaI GTAC 1 cut(s) 938
RsaNI GTAC 1 cut(s) 937
RseI CAYNNNNRTG 5 cut(s) 746, 980, 2160, 2253, 2363
SacI GAGCTC 2 cut(s) 505, 2459
SatI GCNGC 9 cut(s) 153, 170, 192, 1403, 1721, 1724, 1749, 1832, 2823
SchI GAGTC 3 cut(s) 950, 1688, 2907
ScrFI CCNGG 7 cut(s) 213, 279, 383, 969, 989, 1416, 1586
SduI GDGCHC 6 cut(s) 505, 705, 1136, 1647, 2459, 2963
SfaNI GCATC 8 cut(s) 19, 405, 738, 1081, 2139, 2257, 2742, 2773
SfcI CTRYAG 1 cut(s) 618
Sfr274I CTCGAG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 2909
SinI GGWCC 5 cut(s) 78, 1800, 2368, 2692, 3022
SlaI CTCGAG 1 cut(s) 195
SmiMI CAYNNNNRTG 5 cut(s) 746, 980, 2160, 2253, 2363
SmlI CTYRAG 4 cut(s) 195, 850, 932, 1835
SmoI CTYRAG 4 cut(s) 195, 850, 932, 1835
SsiI CCGC 5 cut(s) 328, 1720, 1910, 2020, 2918
SspI AATATT 3 cut(s) 474, 1999, 2441
SspMI CTAG 3 cut(s) 923, 1065, 2675
SstI GAGCTC 2 cut(s) 505, 2459
StyD4I CCNGG 7 cut(s) 211, 277, 381, 967, 987, 1414, 1584
StyI CCWWGG 1 cut(s) 2685
TaaI ACNGT 5 cut(s) 244, 1320, 1925, 2101, 2998
TaiI ACGT 4 cut(s) 205, 1767, 2089, 2125
TaqI TCGA 7 cut(s) 55, 196, 889, 1120, 1382, 1651, 2909
TatI WGTACW 1 cut(s) 936
TauI GCSGC 1 cut(s) 1723
TfiI GAWTC 3 cut(s) 1073, 1384, 2447
TscAI CASTG 3 cut(s) 2206, 2290, 3010
TseI GCWGC 8 cut(s) 152, 169, 191, 1402, 1723, 1748, 1831, 2822
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 3 cut(s) 2206, 2290, 3010
Van91I CCANNNNNTGG 2 cut(s) 530, 836
VneI GTGCAC 1 cut(s) 1643
VpaK11BI GGWCC 5 cut(s) 78, 1800, 2368, 2692, 3022
VspI ATTAAT 1 cut(s) 1209
XapI RAATTY 5 cut(s) 43, 51, 542, 1143, 2427
XceI RCATGY 2 cut(s) 1437, 3069
XcmI CCANNNNNNNNNTGG 2 cut(s) 2794, 2884
XhoI CTCGAG 1 cut(s) 195
XmnI GAANNNNTTC 2 cut(s) 1072, 2394
XspI CTAG 3 cut(s) 923, 1065, 2675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.