RLG00000029320

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0004174
Physical Location & Seq
Reverse (-)
36473041 .. 36479902
6862 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029320

Sequence Viewer

Length: 3288 bp
ATGATTTCTCATACCTCGCACTCCACTCTCAGCCACCATGGCTGCCTCACTTGTGCGGCTCAACCCCCAGCACACTCCACTCCTCCACAGCTTCAACACGACGTCGTCCATGGCGGTCATCATAAGAGGACTCTTTGTGAACTTTATAATGATACTATTGTGACATCCTCTACAATGGAAGTTGATGCCGGAACTCCGAATTCACAAATTCCAGCTCAACACAAAAAAAGAAGGACCGGAGTTTTGTTATCCGAGACTTTTAGTAATGGTAATGGCGCTTTTTCCTTACCCTACCTACCAACTCTTGAAGCAGCTGATTACTATACGCAGCCTTCTTTGAAGGAACTGGCTGCTCGAGAACGTATGGATCCTGGTTATTCTACCCGAGTTTTGGACTTTACGGTTGGGAGGTTTGGTTATGGATCTGTCAAGTATCCTGGGGAGACTGATGTTAGGTGTTTAGAATTAGATAGAATTGTCAAGTTCCGCAGGCATGAGGTGATTGTATATGAAGATGAGAGTGCCAAGCCTTTGGTTGGCGAGGGCCTTAACAAGCCTGCCGAAGTAACTTTGATGCTACAAACAAGGGTATCATGTGTTGACAAGAGACAGAAAGAAAATATCATGAAAATATTGAGACAAAGTGTGGAGGGACAAGGAGCTCATTTTGTTTCGTTTAATCCAGAAAATGGGGAATGGAAATTCTTTGTTAACCATTTTAGCAGATTTGGGTTGACTGAAGAAGATGAAGAAGATATGATGATGGAAGATACTGCTGTAGCTGAAGATCCTCCGGAATTGAACCATGATGAGATCTCTGATGCTGATGAAGAAAACCAAATGGATCCTACTGGAATTGTGCTCTCGCATTCTCTTCCTGCTCATCTTGGGCTTGACCCCATCAAGATGCAAGAAATGAGAATGTTGATGTTTTCTGATTTGGATGAGGAAGCTGAGGATTTGAGAGAATTACCTGCACATTATAATCCATCATTTGGTAAAGAATACTCAAGATCTCCTTTAGAAAATGCTCAAAGGATCAGTTATCGATCTACTCCACCAGCTGTGCGAAAGACCCCTCTAGCATTGCTTGAGTACAAGCATGGTAGTTTTGACTCAAACTCTCCTGGAGCCATTCTAATGGCCCAGGAAAATAAAGCCTTGCCATTGAAGACACTAAAAGAAGGTTTTAAGCTTGATCTCAGTAGTGAAACACCAGTAACTAGAAAAGATTCTCGCAACATAGTTGATGCAGGTTTGTTAATGGGTGGGTCTTTTCGAGTAGGATGGGGCCCAAATGGAATTCTTGTCCATGCTGGCACACCAATAGGCAGTAATGGTTCCCAAAGGGTGCTGTCATCTGTAATTAATATAGAGAAGGTTGCTATTGACAATGTTGTTAGAGATGAAAATAACAAGGTTAGAGCAGAACTTGTTGAAACGGCTATCACTTCTCCATTGGAGCTTCACAAGGGACTGTTTCATGAAACAAAAGAAGTTGAAATTGGATCCTTCAGTCTGAGACTTCAGAAGCTTGTCTCGAATCGGTTTATGCTATCAGATATTTGCAGGAGTTATGTAGATATTATTGAGAGGCAGCTGGAGGTTCCTGGTTTATCTTCCTCTGCTTGTTTGGTTTTGACACATCAAATTATGATTTGGGAATTGATAAAAGTTCTTTTCTTTGAAAGGGAAAATGGCGAGAAAATGGAATCTTTTGGTGCTGATGATGAGGAAGAAATGGTGCAGGATGAGAAGCTCCCTTCACAGGAAACCGACCCGGAAGCATTACCTCTGATTAGGAGGGCCGAGTTCAGTTACTGGTTGCAAGAGAATGTGCGCCATCGAGTAGAAGAAATCATCTCCTTGAATGAATCCAATTATCTGGAATCCATATTATTACTTCTGAGTGGGCGGCAGCTCGATGAAGCTGTGGAACTGGCTGCTTCTCAGGGAGACGTGAGATTGGCTTGTTTGTTAAGTCAGTCTGGTGGGTCCATAGTTAATCGTTCTGACATTGCACAACAGCTTGAGCTTTGGAGGATCAATGGACTGGATTTCAGTTTCATTGAGAAAGATAGGATAAGGCTTTATGAGTTACTTGCGGGTAATGTCCACGGTGCTTTTCATGATATTGAAGTTGATTGGAAGAGGTTTCTTGGGTTATTGATGTGGTATCACTTAGCACCTAATACTCCATTACCCATTGTTTTCCGCACATATCATGATCTTCTTAATGAAAATAAGGCTCCACATCCTGTTCCTGTTTACATTGATGGACGTGTAAAAGAGACTCTGGATCGGAGTGCAGAGAAACGTTATGACCTATCATATTACCTTATGATGCTACATGGCAGTGAAGATAGTGAAGTTGATTTCCTGAAGACCATGTTCAGTGCTTTCTCGTCAACATATGATCCACTTGATTACCATATGATCTGGCATCAGCGTGCTGTGTTGGAAGCAGTTGGGGTCATCAGTGCCAATGATCTTCATGTTCTTGACATGGGATTTGTTTCCCAGTTGTTGTGTCTTGGGCAATGTCATTGGGCCATCTATGTGGTCCTTCACATGGCCCATTGTGAAGACTTTCCATATCTTCATGCTAATCTTATTCGGGAAATTTTGTTCCAATATTGTGATTCTTGGAGCTCACAAATATCACAACGCCAATTCATTGAGGACTTGGGTATTCCTAAAGCATGGCTTCATGAGGCTATGGCAGTTTATTTCAATTATTATGGGGATCTTTCAAAGGCACTTGAACACTTCATTGAGTGTGCAAACTGGCAGAAAGCGCATTCTATTTTCGTAACTTCTGTTGCTCACACATTATTCTTGTCAGCCAAACACTCAGAGATATGGAGGCTAGCAACTTCCTTGGAGGACCACAAATCAGAAATTGAAAATTGGGACTTGGGAGCTGGCATCTACATTTCATTCTATCTAACAAGAAGTTCATTGCAGGGAGCTGACGATGCCATGAGTGAACTGGGTTCTGTTGAAAGCAAAAATGCTGCTTCCAGAGAGTTTCTTCGTCAGTTAAACTTGTCTTTGGTTGTTTGGGGTGCCAAGCTACCAATGGATGTGAGAGTCGTCTATTCGAAGATGGCGGATGAAATATGCAACTTGCTTTTGTCTGATATTAGCGAGGGCCCAACACGAGATGTTCAGTTAAGTTGCTTTGACACCGTTTTCAGTGCGCCCATACCTCATGACCTTCGCTCAAATCATTTGCAAGATGCAGTGTCTCTCTTCACATGCTTTCTATCCGAAGTTGCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009733 GO:0009870 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015267 GO:0015288 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0022803 GO:0022829 GO:0022857 GO:0023052 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045088 GO:0045089 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0055085 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2 Nup96

Protein Analysis

1096

Amino Acids

123.85

Weight (kDa)

5.14

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoporin2 PF04096 105 - 245 7.4e-39 Nup98-96 autopeptidase S59
Nup96 PF12110 630 - 910 1.3e-76 Nuclear protein 96
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 147, 984
AatII GACGTC 1 cut(s) 105
Acc36I ACCTGC 2 cut(s) 982, 1244
AccB1I GGYRCC 1 cut(s) 3068
AccB7I CCANNNNNTGG 2 cut(s) 689, 995
AccIII TCCGGA 1 cut(s) 793
AciI CCGC 7 cut(s) 56, 114, 487, 1915, 2105, 2215, 3113
AclI AACGTT 1 cut(s) 2317
AcsI RAATTY 5 cut(s) 199, 207, 701, 1302, 2622
AcuI CTGAAG 5 cut(s) 759, 804, 1498, 1511, 2402
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 1097
AfiI CCNNNNNNNGG 6 cut(s) 391, 536, 689, 995, 1768, 2572
AflIII ACRYGT 1 cut(s) 2281
AjiI CACGTC 2 cut(s) 1960, 2282
AjnI CCWGG 5 cut(s) 370, 436, 1126, 1146, 1609
AjuI GAANNNNNNNTTGG 2 cut(s) 1488, 1520
AloI GAACNNNNNNTCC 2 cut(s) 2612, 2644
Alw21I GWGCWC 3 cut(s) 664, 864, 2654
Alw26I GTCTC 9 cut(s) 248, 437, 601, 631, 1516, 1543, 1950, 2285, 3255
AlwNI CAGNNNCTG 1 cut(s) 1821
Ama87I CYCGRG 2 cut(s) 354, 384
Aor13HI TCCGGA 1 cut(s) 793
AoxI GGCC 7 cut(s) 544, 1143, 1291, 1806, 2550, 2574, 3154
ApaI GGGCCC 2 cut(s) 1295, 3158
ApeKI GCWGC 8 cut(s) 42, 311, 328, 350, 1597, 1918, 1943, 3017
ApoI RAATTY 5 cut(s) 199, 207, 701, 1302, 2622
ArsI GACNNNNNNTTYG 4 cut(s) 226, 258, 2495, 2527
AseI ATTAAT 1 cut(s) 1368
Asp700I GAANNNNTTC 2 cut(s) 1231, 2589
AspLEI GCGC 4 cut(s) 278, 1842, 2800, 3205
AsuC2I CCSGG 1 cut(s) 1781
AsuHPI GGTGA 1 cut(s) 511
AsuII TTCGAA 1 cut(s) 3104
AsuNHI GCTAGC 1 cut(s) 2869
AvaI CYCGRG 2 cut(s) 354, 384
AvaII GGWCC 4 cut(s) 234, 1995, 2563, 2887
BaeGI GKGCMC 2 cut(s) 1295, 3158
BaeI ACNNNNGTAYC 6 cut(s) 144, 177, 573, 606, 762, 795
BamHI GGATCC 3 cut(s) 367, 844, 1508
BanI GGYRCC 1 cut(s) 3068
BanII GRGCYC 4 cut(s) 664, 1295, 2654, 3158
BauI CACGAG 1 cut(s) 3162
BbsI GAAGAC 3 cut(s) 1178, 2390, 2592
Bbv12I GWGCWC 3 cut(s) 664, 864, 2654
BbvCI CCTCAGC 1 cut(s) 954
BbvI GCAGC 8 cut(s) 29, 323, 337, 340, 1609, 1930, 1930, 3004
BccI CCATC 8 cut(s) 757, 908, 997, 1281, 1851, 2270, 2561, 3103
BceAI ACGGC 1 cut(s) 1458
BciT130I CCWGG 5 cut(s) 372, 438, 1128, 1148, 1611
BciVI GTATCC 1 cut(s) 444
BcnI CCSGG 1 cut(s) 1781
BcoDI GTCTC 9 cut(s) 248, 437, 601, 631, 1516, 1543, 1950, 2285, 3255
BfaI CTAG 3 cut(s) 1082, 1224, 2870
BfmI CTRYAG 1 cut(s) 777
BfoI RGCGCY 1 cut(s) 279
BfuAI ACCTGC 2 cut(s) 982, 1244
BfuI GTATCC 1 cut(s) 444
BglI GCCNNNNNGGC 1 cut(s) 39
BglII AGATCT 2 cut(s) 813, 1013
Bme1390I CCNGG 6 cut(s) 372, 438, 1128, 1148, 1611, 1781
Bme18I GGWCC 4 cut(s) 234, 1995, 2563, 2887
BmeT110I CYCGRG 2 cut(s) 354, 384
BmgBI CACGTC 2 cut(s) 1960, 2282
BmrFI CCNGG 6 cut(s) 372, 438, 1128, 1148, 1611, 1781
BmrI ACTGGG 2 cut(s) 2515, 3002
BmtI GCTAGC 1 cut(s) 2873
BmuI ACTGGG 2 cut(s) 2515, 3002
BpiI GAAGAC 3 cut(s) 1178, 2390, 2592
BpmI CTGGAG 2 cut(s) 1149, 1622
Bpu10I CCTNAGC 1 cut(s) 954
Bpu14I TTCGAA 1 cut(s) 3104
BpuEI CTTGAG 3 cut(s) 994, 1112, 2051
BpuMI CCSGG 1 cut(s) 1781
Bsa29I ATCGAT 1 cut(s) 1048
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 6 cut(s) 37, 109, 437, 1146, 2116, 2880
BsaWI WCCGGW 2 cut(s) 236, 793
BsaXI ACNNNNNCTCC 2 cut(s) 400, 430
Bsc4I CCNNNNNNNGG 6 cut(s) 391, 536, 689, 995, 1768, 2572
Bse1I ACTGG 9 cut(s) 351, 856, 1217, 1826, 1944, 2058, 2521, 2792, 2997
Bse3DI GCAATG 4 cut(s) 1085, 2016, 2546, 2960
BseAI TCCGGA 1 cut(s) 793
BseBI CCWGG 5 cut(s) 372, 438, 1128, 1148, 1611
BseCI ATCGAT 1 cut(s) 1048
BseDI CCNNGG 6 cut(s) 37, 109, 437, 1146, 2116, 2880
BseGI GGATG 7 cut(s) 164, 949, 1292, 1756, 2254, 3091, 3121
BseLI CCNNNNNNNGG 6 cut(s) 391, 536, 689, 995, 1768, 2572
BseMI GCAATG 4 cut(s) 1085, 2016, 2546, 2960
BseMII CTCAG 7 cut(s) 43, 945, 1216, 1511, 1898, 1964, 2868
BseNI ACTGG 9 cut(s) 351, 856, 1217, 1826, 1944, 2058, 2521, 2792, 2997
BseRI GAGGAG 1 cut(s) 72
BseSI GKGCMC 2 cut(s) 1295, 3158
BseXI GCAGC 8 cut(s) 29, 323, 337, 340, 1609, 1930, 1930, 3004
BseYI CCCAGC 1 cut(s) 67
BsgI GTGCAG 3 cut(s) 960, 1766, 2328
BshFI GGCC 7 cut(s) 546, 1145, 1293, 1808, 2552, 2576, 3156
BshNI GGYRCC 1 cut(s) 3068
BshVI ATCGAT 1 cut(s) 1048
BsiHKAI GWGCWC 3 cut(s) 664, 864, 2654
BsiHKCI CYCGRG 2 cut(s) 354, 384
BsiSI CCGG 4 cut(s) 189, 237, 794, 1781
BslFI GGGAC 3 cut(s) 666, 1488, 2927
BslI CCNNNNNNNGG 6 cut(s) 391, 536, 689, 995, 1768, 2572
BsmAI GTCTC 9 cut(s) 248, 437, 601, 631, 1516, 1543, 1950, 2285, 3255
BsmBI CGTCTC 1 cut(s) 1950
BsmFI GGGAC 3 cut(s) 666, 1488, 2927
BsmI GAATGC 2 cut(s) 868, 2800
BsnI GGCC 7 cut(s) 546, 1145, 1293, 1808, 2552, 2576, 3156
BsoBI CYCGRG 2 cut(s) 354, 384
Bsp119I TTCGAA 1 cut(s) 3104
Bsp120I GGGCCC 2 cut(s) 1291, 3154
Bsp1286I GDGCHC 5 cut(s) 664, 864, 1295, 2654, 3158
Bsp13I TCCGGA 1 cut(s) 793
Bsp19I CCATGG 2 cut(s) 37, 109
BspACI CCGC 7 cut(s) 56, 114, 487, 1915, 2105, 2215, 3113
BspANI GGCC 7 cut(s) 546, 1145, 1293, 1808, 2552, 2576, 3156
BspCNI CTCAG 7 cut(s) 42, 946, 1215, 1512, 1899, 1963, 2867
BspDI ATCGAT 1 cut(s) 1048
BspEI TCCGGA 1 cut(s) 793
BspHI TCATGA 6 cut(s) 624, 1483, 2128, 2224, 2710, 3214
BspMI ACCTGC 2 cut(s) 982, 1244
BspOI GCTAGC 1 cut(s) 2873
BspT104I TTCGAA 1 cut(s) 3104
BspT107I GGYRCC 1 cut(s) 3068
BsrDI GCAATG 4 cut(s) 1085, 2016, 2546, 2960
BsrI ACTGG 9 cut(s) 351, 856, 1217, 1826, 1944, 2058, 2521, 2792, 2997
BssECI CCNNGG 6 cut(s) 37, 109, 437, 1146, 2116, 2880
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 3162
BssT1I CCWWGG 3 cut(s) 37, 109, 2880
Bst2BI CACGAG 1 cut(s) 3162
Bst2UI CCWGG 5 cut(s) 372, 438, 1128, 1148, 1611
Bst4CI ACNGT 4 cut(s) 403, 1479, 2120, 3193
Bst6I CTCTTC 3 cut(s) 879, 2144, 3260
BstACI GRCGYC 1 cut(s) 102
BstBI TTCGAA 1 cut(s) 3104
BstC8I GCNNGC 6 cut(s) 491, 558, 1318, 2451, 2871, 2926
BstDEI CTNAG 8 cut(s) 29, 954, 1202, 1520, 1907, 1950, 2182, 2854
BstDSI CCRYGG 3 cut(s) 37, 109, 2116
BstF5I GGATG 7 cut(s) 164, 949, 1292, 1756, 2254, 3091, 3121
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 4 cut(s) 278, 1842, 2800, 3205
BstMAI GTCTC 9 cut(s) 248, 437, 601, 631, 1516, 1543, 1950, 2285, 3255
BstMWI GCNNNNNNNGC 3 cut(s) 39, 2797, 2978
BstNI CCWGG 5 cut(s) 372, 438, 1128, 1148, 1611
BstNSI RCATGY 1 cut(s) 3264
BstSCI CCNGG 6 cut(s) 370, 436, 1126, 1146, 1609, 1779
BstSFI CTRYAG 1 cut(s) 777
BstSLI GKGCMC 2 cut(s) 1295, 3158
BstV1I GCAGC 8 cut(s) 29, 323, 337, 340, 1609, 1930, 1930, 3004
BstV2I GAAGAC 3 cut(s) 1178, 2390, 2592
BstX2I RGATCY 8 cut(s) 367, 422, 787, 813, 844, 1013, 1508, 2746
BstXI CCANNNNNNTGG 4 cut(s) 532, 1141, 1885, 2560
BstYI RGATCY 8 cut(s) 367, 422, 787, 813, 844, 1013, 1508, 2746
Bsu15I ATCGAT 1 cut(s) 1048
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 7 cut(s) 546, 1145, 1293, 1808, 2552, 2576, 3156
BsuTUI ATCGAT 1 cut(s) 1048
BtgI CCRYGG 3 cut(s) 37, 109, 2116
BtrI CACGTC 2 cut(s) 1960, 2282
BtsCI GGATG 7 cut(s) 164, 949, 1292, 1756, 2254, 3091, 3121
BtsI GCAGTG 2 cut(s) 2362, 3252
BtsIMutI CAGTG 5 cut(s) 2362, 2401, 2485, 3205, 3252
BveI ACCTGC 2 cut(s) 982, 1244
Cac8I GCNNGC 6 cut(s) 491, 558, 1318, 2451, 2871, 2926
CaiI CAGNNNCTG 1 cut(s) 1821
CciI TCATGA 6 cut(s) 624, 1483, 2128, 2224, 2710, 3214
CfoI GCGC 4 cut(s) 278, 1842, 2800, 3205
ClaI ATCGAT 1 cut(s) 1048
Csp6I GTAC 1 cut(s) 1096
CviQI GTAC 1 cut(s) 1096
DdeI CTNAG 8 cut(s) 29, 954, 1202, 1520, 1907, 1950, 2182, 2854
Eam1104I CTCTTC 3 cut(s) 879, 2144, 3260
EarI CTCTTC 3 cut(s) 879, 2144, 3260
EciI GGCGGA 1 cut(s) 3128
Ecl136II GAGCTC 2 cut(s) 662, 2652
Eco130I CCWWGG 3 cut(s) 37, 109, 2880
Eco24I GRGCYC 4 cut(s) 664, 1295, 2654, 3158
Eco47I GGWCC 4 cut(s) 234, 1995, 2563, 2887
Eco53kI GAGCTC 2 cut(s) 662, 2652
Eco57I CTGAAG 5 cut(s) 759, 804, 1498, 1511, 2402
Eco88I CYCGRG 2 cut(s) 354, 384
EcoICRI GAGCTC 2 cut(s) 662, 2652
EcoO109I RGGNCCY 3 cut(s) 544, 1291, 3154
EcoRI GAATTC 2 cut(s) 199, 1302
EcoRII CCWGG 5 cut(s) 370, 436, 1126, 1146, 1609
EcoT14I CCWWGG 3 cut(s) 37, 109, 2880
EcoT38I GRGCYC 4 cut(s) 664, 1295, 2654, 3158
ErhI CCWWGG 3 cut(s) 37, 109, 2880
Esp3I CGTCTC 1 cut(s) 1950
FalI AAGNNNNNCTT 4 cut(s) 1003, 1035, 2691, 2723
FaqI GGGAC 3 cut(s) 666, 1488, 2927
FauI CCCGC 1 cut(s) 2098
FauNDI CATATG 2 cut(s) 2413, 2433
FokI GGATG 7 cut(s) 151, 956, 1299, 1763, 2241, 3098, 3128
FriOI GRGCYC 4 cut(s) 664, 1295, 2654, 3158
FspBI CTAG 3 cut(s) 1082, 1224, 2870
GlaI GCGC 4 cut(s) 277, 1841, 2799, 3204
GsaI CCCAGC 1 cut(s) 71
GsuI CTGGAG 2 cut(s) 1149, 1622
HaeII RGCGCY 1 cut(s) 279
HaeIII GGCC 7 cut(s) 546, 1145, 1293, 1808, 2552, 2576, 3156
HapII CCGG 4 cut(s) 189, 237, 794, 1781
HhaI GCGC 4 cut(s) 278, 1842, 2800, 3205
Hin1I GRCGYC 1 cut(s) 102
Hin6I GCGC 4 cut(s) 276, 1840, 2798, 3203
HinP1I GCGC 4 cut(s) 276, 1840, 2798, 3203
HincII GTYRAC 4 cut(s) 601, 712, 735, 2409
HindII GTYRAC 4 cut(s) 601, 712, 735, 2409
HindIII AAGCTT 2 cut(s) 1193, 1532
HpaI GTTAAC 1 cut(s) 712
HpaII CCGG 4 cut(s) 189, 237, 794, 1781
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 8 cut(s) 140, 601, 712, 735, 2116, 2269, 2409, 2990
Hpy8I GTNNAC 8 cut(s) 140, 601, 712, 735, 2116, 2269, 2409, 2990
Hpy99I CGWCG 2 cut(s) 104, 107
HpyAV CCTTC 9 cut(s) 225, 334, 342, 1178, 1372, 1522, 1773, 2576, 3230
HpyCH4III ACNGT 4 cut(s) 403, 1479, 2120, 3193
HpyCH4IV ACGT 5 cut(s) 102, 361, 1959, 2281, 2317
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 2797, 2978
HpyF3I CTNAG 8 cut(s) 29, 954, 1202, 1520, 1907, 1950, 2182, 2854
HpySE526I ACGT 5 cut(s) 102, 361, 1959, 2281, 2317
Hsp92I GRCGYC 1 cut(s) 102
HspAI GCGC 4 cut(s) 276, 1840, 2798, 3203
Kpn2I TCCGGA 1 cut(s) 793
KspAI GTTAAC 1 cut(s) 712
LmnI GCTCC 8 cut(s) 659, 1130, 1462, 1764, 2254, 2649, 2921, 2969
Lsp1109I GCAGC 8 cut(s) 29, 323, 337, 340, 1609, 1930, 1930, 3004
MaeI CTAG 3 cut(s) 1082, 1224, 2870
MaeII ACGT 5 cut(s) 102, 361, 1959, 2281, 2317
MaeIII GTNAC 6 cut(s) 160, 565, 1219, 1817, 2097, 2812
MflI RGATCY 8 cut(s) 367, 422, 787, 813, 844, 1013, 1508, 2746
MhlI GDGCHC 5 cut(s) 664, 864, 1295, 2654, 3158
MlyI GAGTC 4 cut(s) 124, 1109, 2287, 3102
MmeI TCCRAC 1 cut(s) 2439
MroI TCCGGA 1 cut(s) 793
MroXI GAANNNNTTC 2 cut(s) 1231, 2589
MslI CAYNNNNRTG 5 cut(s) 905, 1139, 2355, 2448, 2558
MspA1I CMGCKG 3 cut(s) 314, 1064, 1600
MspI CCGG 4 cut(s) 189, 237, 794, 1781
MspR9I CCNGG 6 cut(s) 372, 438, 1128, 1148, 1611, 1781
Mva1269I GAATGC 2 cut(s) 868, 2800
MvaI CCWGG 5 cut(s) 372, 438, 1128, 1148, 1611
MwoI GCNNNNNNNGC 3 cut(s) 39, 2797, 2978
NciI CCSGG 1 cut(s) 1781
NcoI CCATGG 2 cut(s) 37, 109
NdeI CATATG 2 cut(s) 2413, 2433
NheI GCTAGC 1 cut(s) 2869
NmeAIII GCCGAG 1 cut(s) 1834
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 3264
NspV TTCGAA 1 cut(s) 3104
PaeR7I CTCGAG 1 cut(s) 354
PagI TCATGA 6 cut(s) 624, 1483, 2128, 2224, 2710, 3214
PctI GAATGC 2 cut(s) 868, 2800
PdmI GAANNNNTTC 2 cut(s) 1231, 2589
PfeI GAWTC 6 cut(s) 1232, 1543, 1712, 1874, 1889, 2642
PflFI GACNNNGTC 1 cut(s) 104
PflMI CCANNNNNTGG 2 cut(s) 689, 995
PfoI TCCNGGA 1 cut(s) 1126
PleI GAGTC 4 cut(s) 124, 1109, 2287, 3101
PpsI GAGTC 4 cut(s) 124, 1109, 2287, 3101
PshBI ATTAAT 1 cut(s) 1368
PsiI TTATAA 2 cut(s) 147, 984
Psp124BI GAGCTC 2 cut(s) 664, 2654
Psp1406I AACGTT 1 cut(s) 2317
Psp6I CCWGG 5 cut(s) 370, 436, 1126, 1146, 1609
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 5 cut(s) 370, 436, 1126, 1146, 1609
PspOMI GGGCCC 2 cut(s) 1291, 3154
PstNI CAGNNNCTG 1 cut(s) 1821
PsuI RGATCY 8 cut(s) 367, 422, 787, 813, 844, 1013, 1508, 2746
PsyI GACNNNGTC 1 cut(s) 104
PvuII CAGCTG 3 cut(s) 314, 1064, 1600
RsaI GTAC 1 cut(s) 1097
RsaNI GTAC 1 cut(s) 1096
RseI CAYNNNNRTG 5 cut(s) 905, 1139, 2355, 2448, 2558
SacI GAGCTC 2 cut(s) 664, 2654
SchI GAGTC 4 cut(s) 124, 1109, 2287, 3102
ScrFI CCNGG 6 cut(s) 372, 438, 1128, 1148, 1611, 1781
SduI GDGCHC 5 cut(s) 664, 864, 1295, 2654, 3158
SfcI CTRYAG 1 cut(s) 777
Sfr274I CTCGAG 1 cut(s) 354
SfuI TTCGAA 1 cut(s) 3104
SinI GGWCC 4 cut(s) 234, 1995, 2563, 2887
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 5 cut(s) 905, 1139, 2355, 2448, 2558
SmlI CTYRAG 4 cut(s) 354, 1009, 1091, 2030
SmoI CTYRAG 4 cut(s) 354, 1009, 1091, 2030
SsiI CCGC 7 cut(s) 56, 114, 487, 1915, 2105, 2215, 3113
SspI AATATT 2 cut(s) 633, 2636
SspMI CTAG 3 cut(s) 1082, 1224, 2870
SstI GAGCTC 2 cut(s) 664, 2654
StyD4I CCNGG 6 cut(s) 370, 436, 1126, 1146, 1609, 1779
StyI CCWWGG 3 cut(s) 37, 109, 2880
TaaI ACNGT 4 cut(s) 403, 1479, 2120, 3193
TaiI ACGT 5 cut(s) 105, 364, 1962, 2284, 2320
TaqI TCGA 7 cut(s) 355, 1048, 1279, 1541, 1846, 1923, 3104
TatI WGTACW 1 cut(s) 1095
TauI GCSGC 2 cut(s) 59, 1918
TfiI GAWTC 6 cut(s) 1232, 1543, 1712, 1874, 1889, 2642
TscAI CASTG 5 cut(s) 2362, 2401, 2485, 3205, 3252
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 8 cut(s) 42, 311, 328, 350, 1597, 1918, 1943, 3017
Tsp45I GTSAC 1 cut(s) 160
TspRI CASTG 5 cut(s) 2362, 2401, 2485, 3205, 3252
Tth111I GACNNNGTC 1 cut(s) 104
Van91I CCANNNNNTGG 2 cut(s) 689, 995
VpaK11BI GGWCC 4 cut(s) 234, 1995, 2563, 2887
VspI ATTAAT 1 cut(s) 1368
XapI RAATTY 5 cut(s) 199, 207, 701, 1302, 2622
XceI RCATGY 1 cut(s) 3264
XcmI CCANNNNNNNNNTGG 2 cut(s) 2989, 3079
XhoI CTCGAG 1 cut(s) 354
XmnI GAANNNNTTC 2 cut(s) 1231, 2589
XspI CTAG 3 cut(s) 1082, 1224, 2870
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.