MD15G1399200.v1.1

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0004174
Physical Location & Seq
Forward (+)
50011301 .. 50017471
6171 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1399200.v1.1.491

Sequence Viewer

Length: 3099 bp
ATGGGCATTGATTCTGGAACTCCTCCTAATTCACATATTGCATGTCAACACAAGAAACGAAGGGTTTCTCAGGACACTTGCTTTTCTTTGTCTGGGACTTTTAGCCATCTTGAAGCATCTGTACCCTGTTTACCAACTTTAGAAGCAGCTGATTACTATACGCAGCCCTCTTTAAAGGATTTGGCTGCTCGAGAATATGCAGATCCTGGTTTTTGTAGCCGAGTGTTGGACTTCACAGTTGGGAGACTTGGTTATGGCTCTGTCAAGTATCCTGGGAAAACTGACATAAGGTGTTTGGAATTAGATAATATCGTCAAGTTCCACAGACACGAGGTAATCGTATATGAAGATGAAGCTGTCAAGCCTTTGGTTGGCCAAGGCCTTAACAAGCCTGCTGAAGTAACTTTGGTTCTGCAAACAAGACCATCAACTATTGACGAGAGACAAAAATATAATATTGTGAAAAAGTTGAGGCAGAGTGCGGAGGGACAAGGAGCTCGCTTTATTTCGTTTAATCCAGAGAGCGGGGAATGGAAATTCTTTGTTCACCATTTCAGCAGATTTGGGTTGAATGAAGATGATGAAGAAGACATCATGATGGAAGATAGTGCTTCAGCTCAAGATCTTGTGGAAATGAACCATGGTGAGATTTCTGATTGTGATGAAGAAAGCCAAATGGATCCCACTGGAATTGTGCTTTCGCATTCTCTACCTGTACATCTTGGGCTTGACCCCATAAAGATGAAAGAAATGAGAATGTTGATGTTCCATGATGAGGAAGAGGAGGCTGAGGATTTGAATCATATCCCTGCACATTATAATTCATCCTTTGCTTCTCAGAGGATGAGTCAGAGATCCACTCCACCAGTTGTGCGAAAAACCCCACTGGCATTGCTAGAGTACAAGCATGGTAATTTTGACTCAAATTCTCCTGGAGCCATTCTAATGGCCCAAGAAAATAAGGCCATGCCCCCTAAGACATTGAAAGAAGGTTTTAAGCTTGATCTCAAGCATGAAACACCAGTAACCAGAAAACATTCTTGCAACATAGTTGATGCTGGTTTGTTTATGGGTAAGTCATTTCGAGTAGGATGGGGCCCAAATGGAACCCTTGTCCATGCTGGAACACCAGTCGGGAGTAATAGTTCTCCAATGATGCTATCATCCATAATCAATATAGAGAAGGTTGCCATTGACAGTGTTGTTCGAGATGAAAACAACAAAGTTAGGGAGGAACTTGTTGACATGGCTATTGATTCTCCTTTAGATCTTCACAAGGGAATATCTCATCAGACAAAGGAGATTGAAGTTGGATCATTCAACCTGAGGCTTCAAAATCTTGTCTCCAACCGTCTGATGCTTCCACAGATTTGTAGGAGCTATGTAGATATTATTGAGAAGCAGCTGGAAGTTCCCAGCCTATCTTCCTCTGCCCGTTTGGTTTTGACACACCAAATAATGATTTGGGAGTTGATAAAAGTTCTCTTTTCTGATAGGGAAATGGGTGGAAAATTGAAATCTTTGGGTGCTGATAGTGAGGAAGAAATGGTTCAAGATGTGAAGGAAGCTTCTCAACAAATAGACCTGGAAGCTTTACCTCTTATTCGGAGGGCAGAGTTTAGCTATTGGTTGCAAGAGAATGTTTCCCATCGAGTACAAGAAAAGATAAGCTCCTTGAATGAGTCCAGTTATCTAGAATATATATTGTTACTTTTGAGTGGGCGTCAGTTGGATGCTGCTGTGGAACTTGCTGCTTCTCGGGGAGACGTGAGATTGGCTTGTTTGTTGAGTCAGGCCGGTGGGTCCATAGTCAATCGTACTGACGTTGCCCAACAACTTGATCGTTGGAGGATCAATGGGCTCGATTTCGACTTCATTGAGAAAGACAGGATAAGGCTCTATGAGTTGCTTGCTGGTAATATCCATGGTGCTTTTCATGATGTTAACGTTGATTGGAAGAGGTTTCTAGGGTTGTTGATGTGGTATCATTTAGAACCTAGCACTTCACTGCCTACGATTTTTCACACCTATCAACATCTTCTTGATGATGGTAAGGCTCCATACCCAGTTCCAGTCTACATTGATGAAGGACTGGTAGAAGAGGCTGGGAATTTGAATGCGGCGAAACGTTATGATCTATCGTATTATCTGATGCTGCTTCATGCCAGTGAAGAAAGTGAAGTTGGCTTTCTGAAGCCCATGTTTAGTGCCTTCTCCTCAACACACGATCCACTGGATTACCATATGATCTGGCATCAGCGTGCAGTGTTGGAAGCAGTTGGTGCTATCAGCTCTAAGGATCTTCATGTTCTTGACATGGGATTTGTTACCCAGTTGTTGTGTCTTGGGCAATGTCATTGGGCCATCTATGTGGTCCTTCACATGCCCCAATCTGAAGATTTTCCATATCTCCATTCTAATCTTATTCGGGAAATCTTGTTCCAATATTGTGAATCCTGGAGTTCACAAGAATCACAACGCCAAGCCATTGTAGACTTGGGTATTCCTAAGGCATGGCTTCATGAGGCTATGGCTGTGTATTTCAATTACTATGGGGATCTTGCGAAGGCTCTTGAACACTTTCTTGAATGTGCAAATTGGCAGAGAGCACATACTATTTTCGTAACTTCTGTGGCTCCCAAATTATTCTTGTCTGTCGAACACTCAGATATATGGAGAATTGCAACTTCCATGGAGGACCACAAATCAGAAATTGAAAATTGGGACCTCGGAGCTGGGATTTATATTTCATTCTATTCGATTAGAAGTTCATTGCAGGATGTGAACGATACCATGAATCAAATGGATTCACTTGAAAGCAGAAATTCTGCTTGTAGAGAATTTCTTGGTCAGTTAAACCAGTCTTTGGCTGTTTGGGGTGTCAGGTTACCAATTGATGTGAGGGTAGTATATTCGAAGATGGCGGACGAGATATGCAATTTGCTTTTATCTGATATTGGCGAGGGACCAACACGAGATGTTCAATTAAGTTGCTTTGACACTGTTTTTAGTGCTCCCATTCCTGAAGACAATCGCTCGAGCCATTTGCAAGAGGCAGTGTCTCTCTTTACATGCTTTCTTTCAGAGGTTGCTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009733 GO:0009870 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015267 GO:0015288 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0022803 GO:0022829 GO:0022857 GO:0023052 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045088 GO:0045089 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0055085 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2 Nup96

Protein Analysis

1033

Amino Acids

116.64

Weight (kDa)

5.19

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoporin2 PF04096 50 - 190 1.1e-37 Nup98-96 autopeptidase S59
Nup96 PF12110 567 - 847 2.1e-78 Nuclear protein 96
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 819
AccB7I CCANNNNNTGG 1 cut(s) 2866
AccBSI CCGCTC 1 cut(s) 525
AccI GTMKAC 2 cut(s) 2076, 2493
AciI CCGC 4 cut(s) 482, 525, 2120, 2924
AclI AACGTT 2 cut(s) 1947, 2128
AclWI GGATC 9 cut(s) 197, 674, 687, 849, 1321, 1859, 2222, 2307, 2565
AcoI YGGCCR 1 cut(s) 373
AcsI RAATTY 5 cut(s) 536, 925, 2110, 2824, 2840
AcuI CTGAAG 5 cut(s) 417, 597, 2213, 2415, 3045
AcyI GRCGYC 1 cut(s) 1723
AfaI GTAC 5 cut(s) 123, 717, 902, 1656, 1819
AfiI CCNNNNNNNGG 5 cut(s) 226, 371, 524, 775, 2866
AjiI CACGTC 1 cut(s) 1768
AjnI CCWGG 5 cut(s) 205, 271, 931, 1584, 2456
AjuI GAANNNNNNNTTGG 2 cut(s) 2166, 2198
AloI GAACNNNNNNTCC 4 cut(s) 1129, 1161, 2423, 2455
Alw21I GWGCWC 3 cut(s) 499, 2611, 3016
Alw26I GTCTC 5 cut(s) 238, 436, 1348, 1758, 3066
AlwI GGATC 9 cut(s) 197, 674, 687, 849, 1321, 1859, 2222, 2307, 2565
AlwNI CAGNNNCTG 1 cut(s) 206
Ama87I CYCGRG 3 cut(s) 189, 1758, 3037
AoxI GGCC 7 cut(s) 373, 379, 948, 963, 1096, 1794, 2361
ApaI GGGCCC 1 cut(s) 1100
ApeKI GCWGC 7 cut(s) 146, 163, 185, 1402, 1736, 1751, 2155
ApoI RAATTY 5 cut(s) 536, 925, 2110, 2824, 2840
ArsI GACNNNNNNTTYG 2 cut(s) 2306, 2338
Asp700I GAANNNNTTC 5 cut(s) 64, 1036, 1548, 2400, 2580
AspS9I GGNCC 9 cut(s) 949, 1096, 1097, 1803, 2361, 2374, 2698, 2725, 2966
AsuHPI GGTGA 2 cut(s) 539, 656
AsuII TTCGAA 1 cut(s) 2915
AvaI CYCGRG 3 cut(s) 189, 1758, 3037
AvaII GGWCC 5 cut(s) 1803, 2374, 2698, 2725, 2966
AxyI CCTNAGG 2 cut(s) 1325, 2508
BaeGI GKGCMC 1 cut(s) 1100
BalI TGGCCA 1 cut(s) 375
BamHI GGATCC 1 cut(s) 679
BanII GRGCYC 3 cut(s) 499, 1100, 1863
BarI GAAGNNNNNNTAC 2 cut(s) 105, 137
BauI CACGAG 2 cut(s) 329, 2973
BbsI GAAGAC 2 cut(s) 594, 3033
Bbv12I GWGCWC 3 cut(s) 499, 2611, 3016
BbvCI CCTCAGC 1 cut(s) 789
BbvI GCAGC 7 cut(s) 158, 172, 175, 1414, 1723, 1738, 2142
BccI CCATC 8 cut(s) 114, 433, 592, 1086, 1656, 2042, 2372, 2914
BcgI CGANNNNNNTGC 2 cut(s) 3028, 3062
BciT130I CCWGG 5 cut(s) 207, 273, 933, 1586, 2458
BciVI GTATCC 1 cut(s) 279
BcoDI GTCTC 5 cut(s) 238, 436, 1348, 1758, 3066
BfaI CTAG 4 cut(s) 896, 1694, 1967, 1998
BfuI GTATCC 1 cut(s) 279
BglII AGATCT 2 cut(s) 622, 1267
BisI GCNGC 8 cut(s) 147, 164, 186, 1403, 1737, 1752, 2121, 2156
BlsI GCNGC 8 cut(s) 148, 165, 187, 1404, 1738, 1753, 2122, 2157
Bme1390I CCNGG 5 cut(s) 207, 273, 933, 1586, 2458
Bme18I GGWCC 5 cut(s) 1803, 2374, 2698, 2725, 2966
BmeT110I CYCGRG 3 cut(s) 189, 1758, 3037
BmgBI CACGTC 1 cut(s) 1768
BmgT120I GGNCC 9 cut(s) 949, 1096, 1097, 1803, 2361, 2374, 2698, 2725, 2966
BmrFI CCNGG 5 cut(s) 207, 273, 933, 1586, 2458
BmrI ACTGGG 2 cut(s) 2060, 2326
BmsI GCATC 7 cut(s) 125, 1045, 1146, 1347, 1723, 2142, 2263
BmuI ACTGGG 2 cut(s) 2060, 2326
BpiI GAAGAC 2 cut(s) 594, 3033
BplI GAGNNNNNCTC 2 cut(s) 844, 876
BpmI CTGGAG 2 cut(s) 954, 2479
Bpu10I CCTNAGC 1 cut(s) 789
Bpu14I TTCGAA 1 cut(s) 2915
BpuEI CTTGAG 2 cut(s) 603, 992
BsaAI YACGTR 1 cut(s) 3096
BsaBI GATNNNNATC 1 cut(s) 798
BsaHI GRCGYC 1 cut(s) 1723
BsaJI CCNNGG 6 cut(s) 272, 376, 640, 1924, 2691, 2728
BsaXI ACNNNNNCTCC 4 cut(s) 235, 265, 1129, 1159
Bsc4I CCNNNNNNNGG 5 cut(s) 226, 371, 524, 775, 2866
Bse118I RCCGGY 1 cut(s) 1796
Bse21I CCTNAGG 2 cut(s) 1325, 2508
Bse3DI GCAATG 3 cut(s) 890, 2357, 2771
Bse8I GATNNNNATC 1 cut(s) 798
BseBI CCWGG 5 cut(s) 207, 273, 933, 1586, 2458
BseDI CCNNGG 6 cut(s) 272, 376, 640, 1924, 2691, 2728
BseGI GGATG 6 cut(s) 824, 849, 1097, 1163, 1738, 2785
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 5 cut(s) 226, 371, 524, 775, 2866
BseMI GCAATG 3 cut(s) 890, 2357, 2771
BseMII CTCAG 5 cut(s) 83, 780, 851, 1316, 2679
BseRI GAGGAG 3 cut(s) 12, 797, 2206
BseSI GKGCMC 1 cut(s) 1100
BseXI GCAGC 7 cut(s) 158, 172, 175, 1414, 1723, 1738, 2142
BseYI CCCAGC 3 cut(s) 1415, 2105, 2735
BsgI GTGCAG 2 cut(s) 795, 2283
BshFI GGCC 7 cut(s) 375, 381, 950, 965, 1098, 1796, 2363
BsiHKAI GWGCWC 3 cut(s) 499, 2611, 3016
BsiHKCI CYCGRG 3 cut(s) 189, 1758, 3037
BsiSI CCGG 1 cut(s) 1797
BslFI GGGAC 4 cut(s) 109, 501, 2738, 2979
BslI CCNNNNNNNGG 5 cut(s) 226, 371, 524, 775, 2866
BsmAI GTCTC 5 cut(s) 238, 436, 1348, 1758, 3066
BsmBI CGTCTC 1 cut(s) 1758
BsmFI GGGAC 4 cut(s) 109, 501, 2738, 2979
BsmI GAATGC 2 cut(s) 703, 2122
BsnI GGCC 7 cut(s) 375, 381, 950, 965, 1098, 1796, 2363
BsoBI CYCGRG 3 cut(s) 189, 1758, 3037
Bsp119I TTCGAA 1 cut(s) 2915
Bsp120I GGGCCC 1 cut(s) 1096
Bsp1286I GDGCHC 5 cut(s) 499, 1100, 1863, 2611, 3016
Bsp1407I TGTACA 1 cut(s) 715
Bsp19I CCATGG 3 cut(s) 640, 1924, 2691
BspACI CCGC 4 cut(s) 482, 525, 2120, 2924
BspANI GGCC 7 cut(s) 375, 381, 950, 965, 1098, 1796, 2363
BspCNI CTCAG 5 cut(s) 82, 781, 850, 1317, 2678
BspHI TCATGA 3 cut(s) 594, 1936, 2521
BspPI GGATC 9 cut(s) 197, 674, 687, 849, 1321, 1859, 2222, 2307, 2565
BspT104I TTCGAA 1 cut(s) 2915
BsrBI CCGCTC 1 cut(s) 525
BsrDI GCAATG 3 cut(s) 890, 2357, 2771
BsrFI RCCGGY 1 cut(s) 1796
BsrGI TGTACA 1 cut(s) 715
BssAI RCCGGY 1 cut(s) 1796
BssECI CCNNGG 6 cut(s) 272, 376, 640, 1924, 2691, 2728
BssNI GRCGYC 1 cut(s) 1723
BssSI CACGAG 2 cut(s) 329, 2973
BssT1I CCWWGG 4 cut(s) 376, 640, 1924, 2691
Bst2BI CACGAG 2 cut(s) 329, 2973
Bst2UI CCWGG 5 cut(s) 207, 273, 933, 1586, 2458
Bst4CI ACNGT 4 cut(s) 238, 1199, 1352, 3004
Bst6I CTCTTC 3 cut(s) 774, 1952, 2094
BstACI GRCGYC 1 cut(s) 1723
BstAPI GCANNNNNTGC 1 cut(s) 2282
BstAUI TGTACA 1 cut(s) 715
BstBAI YACGTR 1 cut(s) 3096
BstBI TTCGAA 1 cut(s) 2915
BstC8I GCNNGC 4 cut(s) 393, 499, 1911, 2262
BstDEI CTNAG 8 cut(s) 69, 789, 837, 975, 1325, 2295, 2508, 2665
BstDSI CCRYGG 3 cut(s) 640, 1924, 2691
BstEII GGTNACC 1 cut(s) 2886
BstF5I GGATG 6 cut(s) 824, 849, 1097, 1163, 1738, 2785
BstMAI GTCTC 5 cut(s) 238, 436, 1348, 1758, 3066
BstMWI GCNNNNNNNGC 1 cut(s) 2282
BstNI CCWGG 5 cut(s) 207, 273, 933, 1586, 2458
BstNSI RCATGY 3 cut(s) 45, 2386, 3075
BstPI GGTNACC 1 cut(s) 2886
BstSCI CCNGG 5 cut(s) 205, 271, 931, 1584, 2456
BstSLI GKGCMC 1 cut(s) 1100
BstSNI TACGTA 1 cut(s) 3096
BstV1I GCAGC 7 cut(s) 158, 172, 175, 1414, 1723, 1738, 2142
BstV2I GAAGAC 2 cut(s) 594, 3033
BstX2I RGATCY 7 cut(s) 202, 622, 679, 854, 1267, 2299, 2557
BstXI CCANNNNNNTGG 2 cut(s) 946, 2371
BstYI RGATCY 7 cut(s) 202, 622, 679, 854, 1267, 2299, 2557
Bsu36I CCTNAGG 2 cut(s) 1325, 2508
BsuI GTATCC 1 cut(s) 279
BsuRI GGCC 7 cut(s) 375, 381, 950, 965, 1098, 1796, 2363
BtgI CCRYGG 3 cut(s) 640, 1924, 2691
BtrI CACGTC 1 cut(s) 1768
BtsCI GGATG 6 cut(s) 824, 849, 1097, 1163, 1738, 2785
BtsI GCAGTG 3 cut(s) 2006, 2271, 3063
BtsIMutI CAGTG 9 cut(s) 684, 884, 1204, 2006, 2173, 2231, 2271, 3000, 3063
Cac8I GCNNGC 4 cut(s) 393, 499, 1911, 2262
CaiI CAGNNNCTG 1 cut(s) 206
CciI TCATGA 3 cut(s) 594, 1936, 2521
Cfr10I RCCGGY 1 cut(s) 1796
Cfr13I GGNCC 9 cut(s) 949, 1096, 1097, 1803, 2361, 2374, 2698, 2725, 2966
CseI GACGC 1 cut(s) 1712
Csp6I GTAC 5 cut(s) 122, 716, 901, 1655, 1818
CspCI CAANNNNNGTGG 4 cut(s) 673, 708, 873, 908
CviQI GTAC 5 cut(s) 122, 716, 901, 1655, 1818
DdeI CTNAG 8 cut(s) 69, 789, 837, 975, 1325, 2295, 2508, 2665
DraI TTTAAA 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 373
Eam1104I CTCTTC 3 cut(s) 774, 1952, 2094
EarI CTCTTC 3 cut(s) 774, 1952, 2094
EciI GGCGGA 1 cut(s) 2939
Ecl136II GAGCTC 1 cut(s) 497
Eco105I TACGTA 1 cut(s) 3096
Eco130I CCWWGG 4 cut(s) 376, 640, 1924, 2691
Eco147I AGGCCT 1 cut(s) 381
Eco24I GRGCYC 3 cut(s) 499, 1100, 1863
Eco47I GGWCC 5 cut(s) 1803, 2374, 2698, 2725, 2966
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 5 cut(s) 417, 597, 2213, 2415, 3045
Eco81I CCTNAGG 2 cut(s) 1325, 2508
Eco88I CYCGRG 3 cut(s) 189, 1758, 3037
Eco91I GGTNACC 1 cut(s) 2886
EcoICRI GAGCTC 1 cut(s) 497
EcoO109I RGGNCCY 2 cut(s) 1096, 2725
EcoO65I GGTNACC 1 cut(s) 2886
EcoRII CCWGG 5 cut(s) 205, 271, 931, 1584, 2456
EcoT14I CCWWGG 4 cut(s) 376, 640, 1924, 2691
EcoT38I GRGCYC 3 cut(s) 499, 1100, 1863
ErhI CCWWGG 4 cut(s) 376, 640, 1924, 2691
Esp3I CGTCTC 1 cut(s) 1758
FaqI GGGAC 4 cut(s) 109, 501, 2738, 2979
FauI CCCGC 1 cut(s) 518
FauNDI CATATG 1 cut(s) 2244
FblI GTMKAC 2 cut(s) 2076, 2493
Fnu4HI GCNGC 8 cut(s) 147, 164, 186, 1403, 1737, 1752, 2121, 2156
FokI GGATG 6 cut(s) 811, 856, 1104, 1150, 1745, 2792
FriOI GRGCYC 3 cut(s) 499, 1100, 1863
Fsp4HI GCNGC 8 cut(s) 147, 164, 186, 1403, 1737, 1752, 2121, 2156
FspBI CTAG 4 cut(s) 896, 1694, 1967, 1998
GluI GCNGC 8 cut(s) 147, 164, 186, 1403, 1737, 1752, 2121, 2156
GsaI CCCAGC 3 cut(s) 1419, 2109, 2739
GsuI CTGGAG 2 cut(s) 954, 2479
HaeIII GGCC 7 cut(s) 375, 381, 950, 965, 1098, 1796, 2363
HapII CCGG 1 cut(s) 1797
HgaI GACGC 1 cut(s) 1712
Hin1I GRCGYC 1 cut(s) 1723
HincII GTYRAC 3 cut(s) 47, 1243, 1945
HindII GTYRAC 3 cut(s) 47, 1243, 1945
HindIII AAGCTT 3 cut(s) 998, 1566, 1590
HpaI GTTAAC 1 cut(s) 1945
HpaII CCGG 1 cut(s) 1797
HphI GGTGA 2 cut(s) 539, 656
Hpy166II GTNNAC 9 cut(s) 47, 131, 547, 1243, 1945, 2077, 2465, 2494, 2785
Hpy8I GTNNAC 9 cut(s) 47, 131, 547, 1243, 1945, 2077, 2465, 2494, 2785
HpyAV CCTTC 8 cut(s) 54, 983, 1177, 1555, 2081, 2221, 2387, 2560
HpyCH4III ACNGT 4 cut(s) 238, 1199, 1352, 3004
HpyCH4IV ACGT 5 cut(s) 1767, 1824, 1947, 2128, 3095
HpyF10VI GCNNNNNNNGC 1 cut(s) 2282
HpyF3I CTNAG 8 cut(s) 69, 789, 837, 975, 1325, 2295, 2508, 2665
HpySE526I ACGT 5 cut(s) 1767, 1824, 1947, 2128, 3095
Hsp92I GRCGYC 1 cut(s) 1723
KspAI GTTAAC 1 cut(s) 1945
LmnI GCTCC 8 cut(s) 494, 935, 1377, 1676, 2062, 2641, 2732, 3019
Lsp1109I GCAGC 7 cut(s) 158, 172, 175, 1414, 1723, 1738, 2142
LweI GCATC 7 cut(s) 125, 1045, 1146, 1347, 1723, 2142, 2263
MaeI CTAG 4 cut(s) 896, 1694, 1967, 1998
MaeII ACGT 5 cut(s) 1767, 1824, 1947, 2128, 3095
MaeIII GTNAC 6 cut(s) 400, 1024, 1707, 2326, 2623, 2886
MbiI CCGCTC 1 cut(s) 525
MfeI CAATTG 1 cut(s) 2892
MflI RGATCY 7 cut(s) 202, 622, 679, 854, 1267, 2299, 2557
MhlI GDGCHC 5 cut(s) 499, 1100, 1863, 2611, 3016
MlsI TGGCCA 1 cut(s) 375
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 4 cut(s) 856, 914, 1691, 1798
MmeI TCCRAC 6 cut(s) 207, 1291, 1371, 1710, 1826, 2250
Mox20I TGGCCA 1 cut(s) 375
MroXI GAANNNNTTC 5 cut(s) 64, 1036, 1548, 2400, 2580
MscI TGGCCA 1 cut(s) 375
MseI TTAA 7 cut(s) 173, 384, 513, 996, 1944, 2855, 2987
MslI CAYNNNNRTG 6 cut(s) 596, 740, 944, 2166, 2259, 2369
Msp20I TGGCCA 1 cut(s) 375
MspA1I CMGCKG 2 cut(s) 149, 1405
MspI CCGG 1 cut(s) 1797
MspR9I CCNGG 5 cut(s) 207, 273, 933, 1586, 2458
MunI CAATTG 1 cut(s) 2892
Mva1269I GAATGC 2 cut(s) 703, 2122
MvaI CCWGG 5 cut(s) 207, 273, 933, 1586, 2458
MwoI GCNNNNNNNGC 1 cut(s) 2282
NcoI CCATGG 3 cut(s) 640, 1924, 2691
NdeI CATATG 1 cut(s) 2244
NmeAIII GCCGAG 1 cut(s) 245
NspI RCATGY 3 cut(s) 45, 2386, 3075
NspV TTCGAA 1 cut(s) 2915
PaeR7I CTCGAG 2 cut(s) 189, 3037
PagI TCATGA 3 cut(s) 594, 1936, 2521
PceI AGGCCT 1 cut(s) 381
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PctI GAATGC 2 cut(s) 703, 2122
PdmI GAANNNNTTC 5 cut(s) 64, 1036, 1548, 2400, 2580
PfeI GAWTC 7 cut(s) 11, 799, 1256, 2453, 2471, 2797, 2807
PflMI CCANNNNNTGG 1 cut(s) 2866
PfoI TCCNGGA 2 cut(s) 931, 2456
PkrI GCNGC 8 cut(s) 148, 165, 187, 1404, 1738, 1753, 2122, 2157
PleI GAGTC 4 cut(s) 855, 914, 1690, 1797
PpsI GAGTC 4 cut(s) 855, 914, 1690, 1797
Ppu21I YACGTR 1 cut(s) 3096
PpuMI RGGWCCY 1 cut(s) 2725
PsiI TTATAA 1 cut(s) 819
Psp124BI GAGCTC 1 cut(s) 499
Psp1406I AACGTT 2 cut(s) 1947, 2128
Psp5II RGGWCCY 1 cut(s) 2725
Psp6I CCWGG 5 cut(s) 205, 271, 931, 1584, 2456
PspEI GGTNACC 1 cut(s) 2886
PspFI CCCAGC 3 cut(s) 1415, 2105, 2735
PspGI CCWGG 5 cut(s) 205, 271, 931, 1584, 2456
PspOMI GGGCCC 1 cut(s) 1096
PspPI GGNCC 9 cut(s) 949, 1096, 1097, 1803, 2361, 2374, 2698, 2725, 2966
PspPPI RGGWCCY 1 cut(s) 2725
PspXI VCTCGAGB 1 cut(s) 3037
PsrI GAACNNNNNNTAC 2 cut(s) 393, 425
PstNI CAGNNNCTG 1 cut(s) 206
PsuI RGATCY 7 cut(s) 202, 622, 679, 854, 1267, 2299, 2557
PvuII CAGCTG 2 cut(s) 149, 1405
RsaI GTAC 5 cut(s) 123, 717, 902, 1656, 1819
RsaNI GTAC 5 cut(s) 122, 716, 901, 1655, 1818
RseI CAYNNNNRTG 6 cut(s) 596, 740, 944, 2166, 2259, 2369
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 7 cut(s) 173, 384, 513, 996, 1944, 2855, 2987
SatI GCNGC 8 cut(s) 147, 164, 186, 1403, 1737, 1752, 2121, 2156
Sau96I GGNCC 9 cut(s) 949, 1096, 1097, 1803, 2361, 2374, 2698, 2725, 2966
SchI GAGTC 4 cut(s) 856, 914, 1691, 1798
ScrFI CCNGG 5 cut(s) 207, 273, 933, 1586, 2458
SduI GDGCHC 5 cut(s) 499, 1100, 1863, 2611, 3016
SfaNI GCATC 7 cut(s) 125, 1045, 1146, 1347, 1723, 2142, 2263
Sfr274I CTCGAG 2 cut(s) 189, 3037
SfuI TTCGAA 1 cut(s) 2915
SinI GGWCC 5 cut(s) 1803, 2374, 2698, 2725, 2966
SlaI CTCGAG 2 cut(s) 189, 3037
SmiMI CAYNNNNRTG 6 cut(s) 596, 740, 944, 2166, 2259, 2369
SmlI CTYRAG 4 cut(s) 189, 618, 1007, 3037
SmoI CTYRAG 4 cut(s) 189, 618, 1007, 3037
SnaBI TACGTA 1 cut(s) 3096
SseBI AGGCCT 1 cut(s) 381
SsiI CCGC 4 cut(s) 482, 525, 2120, 2924
SspI AATATT 2 cut(s) 457, 2447
SspMI CTAG 4 cut(s) 896, 1694, 1967, 1998
SstI GAGCTC 1 cut(s) 499
StuI AGGCCT 1 cut(s) 381
StyD4I CCNGG 5 cut(s) 205, 271, 931, 1584, 2456
StyI CCWWGG 4 cut(s) 376, 640, 1924, 2691
TaaI ACNGT 4 cut(s) 238, 1199, 1352, 3004
TaiI ACGT 5 cut(s) 1770, 1827, 1950, 2131, 3098
TatI WGTACW 3 cut(s) 715, 900, 1654
TauI GCSGC 1 cut(s) 2123
TfiI GAWTC 7 cut(s) 11, 799, 1256, 2453, 2471, 2797, 2807
Tru1I TTAA 7 cut(s) 173, 384, 513, 996, 1944, 2855, 2987
Tru9I TTAA 7 cut(s) 173, 384, 513, 996, 1944, 2855, 2987
TscAI CASTG 9 cut(s) 691, 891, 1204, 2013, 2173, 2238, 2271, 3007, 3063
TseI GCWGC 7 cut(s) 146, 163, 185, 1402, 1736, 1751, 2155
TspRI CASTG 9 cut(s) 691, 891, 1204, 2013, 2173, 2238, 2271, 3007, 3063
Van91I CCANNNNNTGG 1 cut(s) 2866
VpaK11BI GGWCC 5 cut(s) 1803, 2374, 2698, 2725, 2966
XapI RAATTY 5 cut(s) 536, 925, 2110, 2824, 2840
XbaI TCTAGA 1 cut(s) 1693
XceI RCATGY 3 cut(s) 45, 2386, 3075
XcmI CCANNNNNNNNNTGG 2 cut(s) 2494, 2800
XhoI CTCGAG 2 cut(s) 189, 3037
XmiI GTMKAC 2 cut(s) 2076, 2493
XmnI GAANNNNTTC 5 cut(s) 64, 1036, 1548, 2400, 2580
XspI CTAG 4 cut(s) 896, 1694, 1967, 1998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.