Rroxscaffold_4G00315180

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004174
Physical Location & Seq
Reverse (-)
39395058 .. 39400797
5740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315180.1

Sequence Viewer

Length: 3162 bp
ATGGCTGCCTCACTTGTGCGCCTCAACCCCCAACACACTCCACTCCTCCACAGCTTCAACACGACGTCGTCCATGGCGGCCATCATAAGAGTAAGAAACAAACCGACACTCCTCAAATTAATTACGCTTAATTCACTTTTCATAGTCTTTGAAGCTTTAATTTCACATGATTATCATTTCAAATTCGCTCGTTTCCCTGGGACTCTATGTGAACTCTATAATGATACTATTGTGACTTCCTCCACAATGGAAGTTGATACCGGAACTCCGAATTCACAAATTCCAGGTCAGCAGAAAAAAAGAAGGACCGGAGTTTTGTTGTCCGAGACTTTTAGTAATGGTAATGGCGCTTTTTCCTTACCCTACCTACCAACTCTTGAAGCAGCTGATTACTATACGCAGCCTTCTTTGAAGGAATTGGCTGCTCGAGAACGTTTGGATCCTGGTTATTCTACCCGAGTTTTGGACTTTACGGTTGGGAGGTTTGGTTATGGATCTGTCAAGTATCCTGGGGAGACTGATGTTAGGTGTTTAGAATTAGATAGAATTGTCAAGTTCCGCAGGCATGAGGTGATTGTATATGAAGATGAGAGTGCCAAGCCTTTGGTTGGCCAGGGCCTTAACAAGCCTGCTGAAGTAACTTTGATGCTACAAACAAGGGTATCGTGTGTTGACCAGAGACAGAGAGAAAATATCGTGAAAATATTGAGACAAAGTGTGGAGGGACAAGGAGCTCATTTTGTTTCGTTTCATCCAGAAAATGGGGAATGGAAATTCTTTGTTAACCATTTTAGCAGATTTGGGTTGACTGAAGAAGATGAAGAAGATATGATGATGGAAGATACTGATGTAGCTGAAGATCCTCCGGAATTGAACCACGATGAGATCTCTGATGCTGATGAAGAAAACCAAATGGATCCTACTGGAATTGTGCTCTCGCATTCTCTTCCTGCTCATCTTGGGCTTGACCCCATCAAGATGAAAGAAATGAGAATGTTGATGTTTTCTGATTTGGATGAGGAAGCCGAAGATATGAAAGAATTACCTGCACATTATAATCCATCATTTGGTAAAGAATACTCAAGATCTCCTTTAGAAAATGCTCAAGGGATGAGTTATCGATCTACTCCACCAGCTGTGCGAAAGACCCCTCTAGCATTGCTTGAGTACAAGCATGGTAGTTTTGACTCAAACTCTCCTGGAGCCATTCTAATGGCCCAGGAAAATAAAGCCTTGCCATTGAAGACACTAAAAGAAGGTTTTAAGCTTGATCTCAGTAGTGAAACACCAGTAACTGGAAAAGATTCTCGCAACATAGTTGATGCAGGTTTGTTAATGGGTAGGTCTTTTCGAGTAGGATGGGGCCCAAATGGAATTCTTGTCCATGCTAGCACACCAATAGGCAGTAATGGTTCCCAAAGGGTGCTGTCATCTGTAATTAATATAGAGAAGGTTGCTATTGACAATGTTGTCAGAGATAAAAATAACAAGGTTAGAGCTGAACTTGTTGAAACAGCTATCACTTCTCCATTGAGCTTCACAAGGGACTATATTTGCAGGAGTTATGTAGATATTAATGAGAGGCAGCTGGAGGTTCCTGGTTTATCTTCCTCTGCTTGTTTGGTTTTGACACATCAAATTATGATTTGGGAATTGATAAAAGTTCTTTTCTCTGAAAGGGAAAATGGCGAGAAAATGGAATCTTTTGGTGCTGATGATGAGGAAGAAATGCTGGATGAAGCTGTGGAACTGGCTGCTTCTCAGGGAGACGTGAGATTGGCTTGTTTGTTAAGTCAGTCTGGTGGGTCCATAGTTAATCGTTCTGACATTGCACAACAGCTTGAGCTTTGGAGGATCAATGGACTGGATTTCAGTTTCATTGAGAAAGATAGGATAAGGCTTTATGAGTTGCTTGCGGGTAATGTCCACGGTGCTTTTCATGGTATGGAAGTTGATTGGAAGAGGTTTCTTGGGTTATTGATGTGGTATCACTTACCACCTAATATTCCATTACCCATTGTTTTCCGCACATATCATGATCTTCTTAATGAGAATAAGGCTCCATATCCTGTTCCTGTTTACATTGATGGACGTGTAGAAGAGACTGTGGATCGGAGTGCAGAGAAACGTTATGACCTATCATATTACCTTATGATGCTACATGGCAGTGAAGATAGTGAAGTTGATTTCCTGAAGACCATGTTCAGTGCTTTCTCGTCAACATATGATCCACTTGATTACCATATGATCTGGCATCAGCGTGCTGTGTTGGAAGCAGTTGGGGTCGTCAGTGCCAATGATCTTCATGTTCTTGACATGGGATTTGTTTCCCAGTTGTTGTGTCTTGGGCAATGTCATTGGGCCATCTATGTGGTCCTTCACATGACCCATTGTGAAGACTTTCCATATCTTCATGCTAATCTTATTCGGGAAATTTTGTTCCAATATTGTGATTCTTGGAGCTCACAAATATCACAACGCCAATTCATTGAGGACTTGGGTATTCCTAAAGCATGGCTTCATGAGGCTATGATGGATGACTCTATGTTCAGTTTGAAATCCTTATTTAATCCCCTTCCTGCTGTGCCTCAATATGCAGTTTATTTCAATTATTATGGGGATCTTTCAAAGGCACTTGAATGCTTCATTGAATGTGCAAACTGGCAGAAAGCGCATTCTATTTTCGTAACTTCTGTTGCTCACACATTATTCTTGTCAGCCAAACACTCAGAGATATGGAGGCTAGCAACTTCCATGGAGGACCACAAATCAGAAATTGAAAATTGGGACTTGGGAGCTGGCATCTACATTTCATTCTATCTAACAAGAAGTTCATTGCAGGGAGCTGACGATGCCATGAGTGAACTGGGTTCTGTTGAAAGCAAAATTGCTGCTTCCAGAGAGTTTCTTGGTCAGTTAAACTTGTCTTTGACTGTTTGGGGTGCCAAGCTACCAATGGATGTGAGAGTCGTCTATTCGAAGATGGCGGATGAAATATGCAACTTGCTTTTGTCTGATATTAGCGAGGGCCCAACACGAGATGTTCAGTTAAGTTGCTTTGACACCGTTTTCAGTGCGCCCATACCTCAGGACCTTCGCTCAAATCATTTGCAAGATGCAGTGTCTCTCTTTACATGCTTTCTATCCGAAGTTGCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009733 GO:0009870 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015267 GO:0015288 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0022803 GO:0022829 GO:0022857 GO:0023052 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045088 GO:0045089 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0055085 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2 Nup96

Protein Analysis

1053

Amino Acids

118.89

Weight (kDa)

5.04

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoporin2 PF04096 129 - 269 4.9e-38 Nup98-96 autopeptidase S59
Nup96 PF12110 578 - 844 1.7e-70 Nuclear protein 96
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1056
AasI GACNNNNNNGTC 1 cut(s) 1469
AatII GACGTC 1 cut(s) 68
Acc36I ACCTGC 2 cut(s) 1054, 1316
AccB1I GGYRCC 1 cut(s) 2942
AccB7I CCANNNNNTGG 3 cut(s) 761, 1067, 1295
AccIII TCCGGA 1 cut(s) 865
AciI CCGC 5 cut(s) 77, 559, 1916, 2026, 2987
AclI AACGTT 2 cut(s) 433, 2128
AcoI YGGCCR 2 cut(s) 78, 610
AcsI RAATTY 6 cut(s) 182, 271, 279, 773, 1374, 2433
AcuI CTGAAG 4 cut(s) 654, 831, 876, 2213
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 1 cut(s) 1169
AfiI CCNNNNNNNGG 5 cut(s) 463, 608, 761, 1067, 1295
AflIII ACRYGT 1 cut(s) 2092
AjiI CACGTC 2 cut(s) 1771, 2093
AjnI CCWGG 8 cut(s) 196, 283, 442, 508, 612, 1198, 1218, 1597
AloI GAACNNNNNNTCC 2 cut(s) 2423, 2455
Alw21I GWGCWC 3 cut(s) 736, 936, 2465
Alw26I GTCTC 7 cut(s) 320, 509, 673, 703, 1761, 2096, 3129
AlwNI CAGNNNCTG 1 cut(s) 1295
Ama87I CYCGRG 2 cut(s) 426, 456
Aor13HI TCCGGA 1 cut(s) 865
AoxI GGCC 7 cut(s) 78, 610, 616, 1215, 1363, 2361, 3028
ApaI GGGCCC 2 cut(s) 1367, 3032
ApeKI GCWGC 7 cut(s) 5, 383, 400, 422, 1585, 1754, 2891
ApoI RAATTY 6 cut(s) 182, 271, 279, 773, 1374, 2433
ArsI GACNNNNNNTTYG 6 cut(s) 271, 298, 303, 330, 2306, 2338
AseI ATTAAT 3 cut(s) 119, 1440, 1575
Asp700I GAANNNNTTC 2 cut(s) 1303, 2400
AspLEI GCGC 4 cut(s) 21, 350, 2674, 3079
AsuHPI GGTGA 1 cut(s) 583
AsuII TTCGAA 1 cut(s) 2978
AsuNHI GCTAGC 2 cut(s) 1388, 2743
AvaI CYCGRG 2 cut(s) 426, 456
AvaII GGWCC 5 cut(s) 306, 1806, 2374, 2761, 3091
AxyI CCTNAGG 1 cut(s) 3087
BaeGI GKGCMC 2 cut(s) 1367, 3032
BaeI ACNNNNGTAYC 6 cut(s) 216, 249, 645, 678, 834, 867
BalI TGGCCA 1 cut(s) 612
BamHI GGATCC 2 cut(s) 439, 916
BanI GGYRCC 1 cut(s) 2942
BanII GRGCYC 4 cut(s) 736, 1367, 2465, 3032
BauI CACGAG 1 cut(s) 3036
BbsI GAAGAC 3 cut(s) 1250, 2201, 2403
Bbv12I GWGCWC 3 cut(s) 736, 936, 2465
BbvI GCAGC 6 cut(s) 395, 409, 412, 1597, 1741, 2878
BccI CCATC 9 cut(s) 89, 829, 980, 1069, 1353, 2081, 2372, 2527, 2977
BciT130I CCWGG 8 cut(s) 198, 285, 444, 510, 614, 1200, 1220, 1599
BciVI GTATCC 1 cut(s) 516
BcoDI GTCTC 7 cut(s) 320, 509, 673, 703, 1761, 2096, 3129
BfaI CTAG 3 cut(s) 1154, 1389, 2744
BfoI RGCGCY 1 cut(s) 351
BfuAI ACCTGC 2 cut(s) 1054, 1316
BfuI GTATCC 1 cut(s) 516
BglII AGATCT 2 cut(s) 885, 1085
BisI GCNGC 8 cut(s) 6, 78, 384, 401, 423, 1586, 1755, 2892
BlsI GCNGC 8 cut(s) 7, 79, 385, 402, 424, 1587, 1756, 2893
Bme1390I CCNGG 8 cut(s) 198, 285, 444, 510, 614, 1200, 1220, 1599
Bme18I GGWCC 5 cut(s) 306, 1806, 2374, 2761, 3091
BmeT110I CYCGRG 2 cut(s) 426, 456
BmgBI CACGTC 2 cut(s) 1771, 2093
BmrFI CCNGG 8 cut(s) 198, 285, 444, 510, 614, 1200, 1220, 1599
BmrI ACTGGG 2 cut(s) 2326, 2876
BmsI GCATC 8 cut(s) 636, 883, 1312, 2145, 2263, 2811, 2842, 3106
BmtI GCTAGC 2 cut(s) 1392, 2747
BmuI ACTGGG 2 cut(s) 2326, 2876
BpiI GAAGAC 3 cut(s) 1250, 2201, 2403
BpmI CTGGAG 2 cut(s) 1221, 1610
Bpu14I TTCGAA 1 cut(s) 2978
BpuEI CTTGAG 4 cut(s) 1066, 1089, 1184, 1862
Bsa29I ATCGAT 1 cut(s) 1120
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 8 cut(s) 72, 196, 197, 509, 613, 1218, 1927, 2754
BsaWI WCCGGW 3 cut(s) 260, 308, 865
BsaXI ACNNNNNCTCC 6 cut(s) 93, 123, 250, 280, 472, 502
Bsc4I CCNNNNNNNGG 5 cut(s) 463, 608, 761, 1067, 1295
Bse1I ACTGG 8 cut(s) 928, 1289, 1300, 1755, 1869, 2332, 2666, 2871
Bse21I CCTNAGG 1 cut(s) 3087
Bse3DI GCAATG 4 cut(s) 1157, 1827, 2357, 2834
BseAI TCCGGA 1 cut(s) 865
BseBI CCWGG 8 cut(s) 198, 285, 444, 510, 614, 1200, 1220, 1599
BseCI ATCGAT 1 cut(s) 1120
BseDI CCNNGG 8 cut(s) 72, 196, 197, 509, 613, 1218, 1927, 2754
BseGI GGATG 8 cut(s) 751, 1021, 1116, 1364, 1741, 2542, 2965, 2995
BseLI CCNNNNNNNGG 5 cut(s) 463, 608, 761, 1067, 1295
BseMI GCAATG 4 cut(s) 1157, 1827, 2357, 2834
BseMII CTCAG 4 cut(s) 1288, 1775, 2742, 3101
BseNI ACTGG 8 cut(s) 928, 1289, 1300, 1755, 1869, 2332, 2666, 2871
BseRI GAGGAG 2 cut(s) 35, 101
BseSI GKGCMC 2 cut(s) 1367, 3032
BseXI GCAGC 6 cut(s) 395, 409, 412, 1597, 1741, 2878
BsgI GTGCAG 2 cut(s) 1032, 2139
BshFI GGCC 7 cut(s) 80, 612, 618, 1217, 1365, 2363, 3030
BshNI GGYRCC 1 cut(s) 2942
BshVI ATCGAT 1 cut(s) 1120
BsiHKAI GWGCWC 3 cut(s) 736, 936, 2465
BsiHKCI CYCGRG 2 cut(s) 426, 456
BsiSI CCGG 3 cut(s) 261, 309, 866
BslFI GGGAC 4 cut(s) 214, 738, 1559, 2801
BslI CCNNNNNNNGG 5 cut(s) 463, 608, 761, 1067, 1295
BsmAI GTCTC 7 cut(s) 320, 509, 673, 703, 1761, 2096, 3129
BsmBI CGTCTC 1 cut(s) 1761
BsmFI GGGAC 4 cut(s) 214, 738, 1559, 2801
BsmI GAATGC 3 cut(s) 940, 2645, 2674
BsnI GGCC 7 cut(s) 80, 612, 618, 1217, 1365, 2363, 3030
BsoBI CYCGRG 2 cut(s) 426, 456
Bsp119I TTCGAA 1 cut(s) 2978
Bsp120I GGGCCC 2 cut(s) 1363, 3028
Bsp1286I GDGCHC 5 cut(s) 736, 936, 1367, 2465, 3032
Bsp13I TCCGGA 1 cut(s) 865
Bsp19I CCATGG 2 cut(s) 72, 2754
BspACI CCGC 5 cut(s) 77, 559, 1916, 2026, 2987
BspANI GGCC 7 cut(s) 80, 612, 618, 1217, 1365, 2363, 3030
BspCNI CTCAG 4 cut(s) 1287, 1774, 2741, 3100
BspDI ATCGAT 1 cut(s) 1120
BspEI TCCGGA 1 cut(s) 865
BspHI TCATGA 2 cut(s) 2035, 2521
BspMI ACCTGC 2 cut(s) 1054, 1316
BspOI GCTAGC 2 cut(s) 1392, 2747
BspT104I TTCGAA 1 cut(s) 2978
BspT107I GGYRCC 1 cut(s) 2942
BsrDI GCAATG 4 cut(s) 1157, 1827, 2357, 2834
BsrI ACTGG 8 cut(s) 928, 1289, 1300, 1755, 1869, 2332, 2666, 2871
BssECI CCNNGG 8 cut(s) 72, 196, 197, 509, 613, 1218, 1927, 2754
BssNI GRCGYC 1 cut(s) 65
BssSI CACGAG 1 cut(s) 3036
BssT1I CCWWGG 2 cut(s) 72, 2754
Bst2BI CACGAG 1 cut(s) 3036
Bst2UI CCWGG 8 cut(s) 198, 285, 444, 510, 614, 1200, 1220, 1599
Bst4CI ACNGT 5 cut(s) 475, 1931, 2107, 2935, 3067
Bst6I CTCTTC 3 cut(s) 951, 1955, 2094
BstACI GRCGYC 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 2978
BstC8I GCNNGC 7 cut(s) 563, 630, 1390, 1914, 2262, 2745, 2800
BstDEI CTNAG 4 cut(s) 1274, 1761, 2728, 3087
BstDSI CCRYGG 3 cut(s) 72, 1927, 2754
BstF5I GGATG 8 cut(s) 751, 1021, 1116, 1364, 1741, 2542, 2965, 2995
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 4 cut(s) 21, 350, 2674, 3079
BstMAI GTCTC 7 cut(s) 320, 509, 673, 703, 1761, 2096, 3129
BstMWI GCNNNNNNNGC 2 cut(s) 2671, 2852
BstNI CCWGG 8 cut(s) 198, 285, 444, 510, 614, 1200, 1220, 1599
BstNSI RCATGY 1 cut(s) 3138
BstSCI CCNGG 8 cut(s) 196, 283, 442, 508, 612, 1198, 1218, 1597
BstSLI GKGCMC 2 cut(s) 1367, 3032
BstV1I GCAGC 6 cut(s) 395, 409, 412, 1597, 1741, 2878
BstV2I GAAGAC 3 cut(s) 1250, 2201, 2403
BstX2I RGATCY 7 cut(s) 439, 494, 859, 885, 916, 1085, 2620
BstXI CCANNNNNNTGG 3 cut(s) 604, 1213, 2371
BstYI RGATCY 7 cut(s) 439, 494, 859, 885, 916, 1085, 2620
Bsu15I ATCGAT 1 cut(s) 1120
Bsu36I CCTNAGG 1 cut(s) 3087
BsuI GTATCC 1 cut(s) 516
BsuRI GGCC 7 cut(s) 80, 612, 618, 1217, 1365, 2363, 3030
BsuTUI ATCGAT 1 cut(s) 1120
BtgI CCRYGG 3 cut(s) 72, 1927, 2754
BtrI CACGTC 2 cut(s) 1771, 2093
BtsCI GGATG 8 cut(s) 751, 1021, 1116, 1364, 1741, 2542, 2965, 2995
BtsI GCAGTG 2 cut(s) 2173, 3126
BtsIMutI CAGTG 5 cut(s) 2173, 2212, 2296, 3079, 3126
BveI ACCTGC 2 cut(s) 1054, 1316
Cac8I GCNNGC 7 cut(s) 563, 630, 1390, 1914, 2262, 2745, 2800
CaiI CAGNNNCTG 1 cut(s) 1295
CciI TCATGA 2 cut(s) 2035, 2521
CfoI GCGC 4 cut(s) 21, 350, 2674, 3079
ClaI ATCGAT 1 cut(s) 1120
Csp6I GTAC 1 cut(s) 1168
CviQI GTAC 1 cut(s) 1168
DdeI CTNAG 4 cut(s) 1274, 1761, 2728, 3087
DrdI GACNNNNNNGTC 1 cut(s) 1469
DseDI GACNNNNNNGTC 1 cut(s) 1469
EaeI YGGCCR 2 cut(s) 78, 610
Eam1104I CTCTTC 3 cut(s) 951, 1955, 2094
EarI CTCTTC 3 cut(s) 951, 1955, 2094
EciI GGCGGA 1 cut(s) 3002
Ecl136II GAGCTC 2 cut(s) 734, 2463
Eco130I CCWWGG 2 cut(s) 72, 2754
Eco24I GRGCYC 4 cut(s) 736, 1367, 2465, 3032
Eco47I GGWCC 5 cut(s) 306, 1806, 2374, 2761, 3091
Eco53kI GAGCTC 2 cut(s) 734, 2463
Eco57I CTGAAG 4 cut(s) 654, 831, 876, 2213
Eco81I CCTNAGG 1 cut(s) 3087
Eco88I CYCGRG 2 cut(s) 426, 456
EcoICRI GAGCTC 2 cut(s) 734, 2463
EcoO109I RGGNCCY 4 cut(s) 616, 1363, 3028, 3091
EcoRI GAATTC 2 cut(s) 271, 1374
EcoRII CCWGG 8 cut(s) 196, 283, 442, 508, 612, 1198, 1218, 1597
EcoT14I CCWWGG 2 cut(s) 72, 2754
EcoT38I GRGCYC 4 cut(s) 736, 1367, 2465, 3032
ErhI CCWWGG 2 cut(s) 72, 2754
Esp3I CGTCTC 1 cut(s) 1761
FalI AAGNNNNNCTT 4 cut(s) 1075, 1107, 2502, 2534
FaqI GGGAC 4 cut(s) 214, 738, 1559, 2801
FauI CCCGC 1 cut(s) 1909
FauNDI CATATG 2 cut(s) 2224, 2244
Fnu4HI GCNGC 8 cut(s) 6, 78, 384, 401, 423, 1586, 1755, 2892
FokI GGATG 8 cut(s) 738, 1028, 1123, 1371, 1748, 2549, 2972, 3002
FriOI GRGCYC 4 cut(s) 736, 1367, 2465, 3032
Fsp4HI GCNGC 8 cut(s) 6, 78, 384, 401, 423, 1586, 1755, 2892
FspBI CTAG 3 cut(s) 1154, 1389, 2744
GlaI GCGC 4 cut(s) 20, 349, 2673, 3078
GluI GCNGC 8 cut(s) 6, 78, 384, 401, 423, 1586, 1755, 2892
GsuI CTGGAG 2 cut(s) 1221, 1610
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 7 cut(s) 80, 612, 618, 1217, 1365, 2363, 3030
HapII CCGG 3 cut(s) 261, 309, 866
HhaI GCGC 4 cut(s) 21, 350, 2674, 3079
Hin1I GRCGYC 1 cut(s) 65
Hin6I GCGC 4 cut(s) 19, 348, 2672, 3077
HinP1I GCGC 4 cut(s) 19, 348, 2672, 3077
HincII GTYRAC 4 cut(s) 673, 784, 807, 2220
HindII GTYRAC 4 cut(s) 673, 784, 807, 2220
HindIII AAGCTT 2 cut(s) 153, 1265
HinfI GANTC 7 cut(s) 202, 1187, 1304, 1700, 2453, 2540, 2967
HpaI GTTAAC 1 cut(s) 784
HpaII CCGG 3 cut(s) 261, 309, 866
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 8 cut(s) 212, 673, 784, 807, 1927, 2080, 2220, 2864
Hpy8I GTNNAC 8 cut(s) 212, 673, 784, 807, 1927, 2080, 2220, 2864
Hpy99I CGWCG 2 cut(s) 67, 70
HpyAV CCTTC 8 cut(s) 297, 406, 414, 1250, 1444, 2387, 2585, 3104
HpyCH4III ACNGT 5 cut(s) 475, 1931, 2107, 2935, 3067
HpyCH4IV ACGT 5 cut(s) 65, 433, 1770, 2092, 2128
HpyF10VI GCNNNNNNNGC 2 cut(s) 2671, 2852
HpyF3I CTNAG 4 cut(s) 1274, 1761, 2728, 3087
HpySE526I ACGT 5 cut(s) 65, 433, 1770, 2092, 2128
Hsp92I GRCGYC 1 cut(s) 65
HspAI GCGC 4 cut(s) 19, 348, 2672, 3077
Kpn2I TCCGGA 1 cut(s) 865
KspAI GTTAAC 1 cut(s) 784
LmnI GCTCC 6 cut(s) 731, 1202, 2065, 2460, 2795, 2843
Lsp1109I GCAGC 6 cut(s) 395, 409, 412, 1597, 1741, 2878
LweI GCATC 8 cut(s) 636, 883, 1312, 2145, 2263, 2811, 2842, 3106
MaeI CTAG 3 cut(s) 1154, 1389, 2744
MaeII ACGT 5 cut(s) 65, 433, 1770, 2092, 2128
MaeIII GTNAC 4 cut(s) 232, 637, 1291, 2686
MflI RGATCY 7 cut(s) 439, 494, 859, 885, 916, 1085, 2620
MhlI GDGCHC 5 cut(s) 736, 936, 1367, 2465, 3032
MlsI TGGCCA 1 cut(s) 612
MluNI TGGCCA 1 cut(s) 612
MlyI GAGTC 4 cut(s) 196, 1181, 2534, 2976
MmeI TCCRAC 1 cut(s) 2250
Mox20I TGGCCA 1 cut(s) 612
MroI TCCGGA 1 cut(s) 865
MroXI GAANNNNTTC 2 cut(s) 1303, 2400
MscI TGGCCA 1 cut(s) 612
MslI CAYNNNNRTG 6 cut(s) 977, 1211, 2166, 2259, 2369, 2638
Msp20I TGGCCA 1 cut(s) 612
MspA1I CMGCKG 3 cut(s) 386, 1136, 1588
MspI CCGG 3 cut(s) 261, 309, 866
MspR9I CCNGG 8 cut(s) 198, 285, 444, 510, 614, 1200, 1220, 1599
Mva1269I GAATGC 3 cut(s) 940, 2645, 2674
MvaI CCWGG 8 cut(s) 198, 285, 444, 510, 614, 1200, 1220, 1599
MwoI GCNNNNNNNGC 2 cut(s) 2671, 2852
NcoI CCATGG 2 cut(s) 72, 2754
NdeI CATATG 2 cut(s) 2224, 2244
NheI GCTAGC 2 cut(s) 1388, 2743
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 3138
NspV TTCGAA 1 cut(s) 2978
PaeR7I CTCGAG 1 cut(s) 426
PagI TCATGA 2 cut(s) 2035, 2521
PasI CCCWGGG 1 cut(s) 197
PctI GAATGC 3 cut(s) 940, 2645, 2674
PdmI GAANNNNTTC 2 cut(s) 1303, 2400
PfeI GAWTC 3 cut(s) 1304, 1700, 2453
PflFI GACNNNGTC 1 cut(s) 67
PflMI CCANNNNNTGG 3 cut(s) 761, 1067, 1295
PfoI TCCNGGA 1 cut(s) 1198
PkrI GCNGC 8 cut(s) 7, 79, 385, 402, 424, 1587, 1756, 2893
PleI GAGTC 4 cut(s) 196, 1181, 2534, 2975
PpsI GAGTC 4 cut(s) 196, 1181, 2534, 2975
PpuMI RGGWCCY 1 cut(s) 3091
PshBI ATTAAT 3 cut(s) 119, 1440, 1575
PsiI TTATAA 1 cut(s) 1056
Psp124BI GAGCTC 2 cut(s) 736, 2465
Psp1406I AACGTT 2 cut(s) 433, 2128
Psp5II RGGWCCY 1 cut(s) 3091
Psp6I CCWGG 8 cut(s) 196, 283, 442, 508, 612, 1198, 1218, 1597
PspGI CCWGG 8 cut(s) 196, 283, 442, 508, 612, 1198, 1218, 1597
PspOMI GGGCCC 2 cut(s) 1363, 3028
PspPPI RGGWCCY 1 cut(s) 3091
PstNI CAGNNNCTG 1 cut(s) 1295
PsuI RGATCY 7 cut(s) 439, 494, 859, 885, 916, 1085, 2620
PsyI GACNNNGTC 1 cut(s) 67
PvuII CAGCTG 3 cut(s) 386, 1136, 1588
RsaI GTAC 1 cut(s) 1169
RsaNI GTAC 1 cut(s) 1168
RseI CAYNNNNRTG 6 cut(s) 977, 1211, 2166, 2259, 2369, 2638
SacI GAGCTC 2 cut(s) 736, 2465
SatI GCNGC 8 cut(s) 6, 78, 384, 401, 423, 1586, 1755, 2892
SchI GAGTC 4 cut(s) 196, 1181, 2534, 2976
ScrFI CCNGG 8 cut(s) 198, 285, 444, 510, 614, 1200, 1220, 1599
SduI GDGCHC 5 cut(s) 736, 936, 1367, 2465, 3032
SfaNI GCATC 8 cut(s) 636, 883, 1312, 2145, 2263, 2811, 2842, 3106
Sfr274I CTCGAG 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 2978
SinI GGWCC 5 cut(s) 306, 1806, 2374, 2761, 3091
SlaI CTCGAG 1 cut(s) 426
SmiMI CAYNNNNRTG 6 cut(s) 977, 1211, 2166, 2259, 2369, 2638
SmlI CTYRAG 5 cut(s) 426, 1081, 1104, 1163, 1841
SmoI CTYRAG 5 cut(s) 426, 1081, 1104, 1163, 1841
SsiI CCGC 5 cut(s) 77, 559, 1916, 2026, 2987
SspI AATATT 3 cut(s) 705, 2005, 2447
SspMI CTAG 3 cut(s) 1154, 1389, 2744
SstI GAGCTC 2 cut(s) 736, 2465
StyD4I CCNGG 8 cut(s) 196, 283, 442, 508, 612, 1198, 1218, 1597
StyI CCWWGG 2 cut(s) 72, 2754
TaaI ACNGT 5 cut(s) 475, 1931, 2107, 2935, 3067
TaiI ACGT 5 cut(s) 68, 436, 1773, 2095, 2131
TaqI TCGA 4 cut(s) 427, 1120, 1351, 2978
TatI WGTACW 1 cut(s) 1167
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 3 cut(s) 1304, 1700, 2453
TscAI CASTG 5 cut(s) 2173, 2212, 2296, 3079, 3126
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 7 cut(s) 5, 383, 400, 422, 1585, 1754, 2891
Tsp45I GTSAC 1 cut(s) 232
TspRI CASTG 5 cut(s) 2173, 2212, 2296, 3079, 3126
Tth111I GACNNNGTC 1 cut(s) 67
Van91I CCANNNNNTGG 3 cut(s) 761, 1067, 1295
VpaK11BI GGWCC 5 cut(s) 306, 1806, 2374, 2761, 3091
VspI ATTAAT 3 cut(s) 119, 1440, 1575
XapI RAATTY 6 cut(s) 182, 271, 279, 773, 1374, 2433
XceI RCATGY 1 cut(s) 3138
XcmI CCANNNNNNNNNTGG 2 cut(s) 2863, 2953
XhoI CTCGAG 1 cut(s) 426
XmnI GAANNNNTTC 2 cut(s) 1303, 2400
XspI CTAG 3 cut(s) 1154, 1389, 2744
ZraI GACGTC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.