RchiOBHm_Chr1g0336931

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004174
Physical Location & Seq
Forward (+)
28580433 .. 28587642
7210 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56486

Sequence Viewer

Length: 3285 bp
ATGATTTCTCATACCTCGCACTCCTCTATCAGCCACCATGGCTGCCTCACTTGTGCGGCTCAACCCCCAGCACACTCCACTCCTCCACAGCTTCAACACGACGTCGTCCATGGCGGCCATCATAAGAGGACTGTTTCTGAACTCTATAGTGATACTATTGTGACTTCCTCTGCAATGGAAGTTGATGCCGGAACTCCGAATTCACAAATTCCAGCTCAACACAAAAAAAGAAGGACCGGAGTTTCATTGTGCGAGACTTTTAGTAATGGTAATGGCGCTTCGTTACCCTATTTACCAACTCTTGAAGCAGCTGATTACTATATGCAGCCTTCTTTGACGGAACTGGCTGCTCGAGAACGTGTAGATCCTGGTTATTCTACCCGAGTTTTGGACTTTACGGTTGGGAGGTTTGGTTATGGATCTGTCAAGTATCCTGGGGAGACTGATGTTAGGTGTTTAGAATTAGATAGAATTGTCAAGTTCCGCAGGCATGAGGTGATTGTATATGAAGATGAGAGTGCCAAGCCTTTGGTTGGCCAGGGCCTTAACAAGCCTGCTGAAGTAACTTTGATGCTACAAACAAGGGTATCGTGTGTTGACCAGAGACAGAAAGAGAATATTGTGAAAATATTGAGACAAAGTGTGGAGGGACAAGGAGCTCATTTTGTTTCGTTTAATCCAGAAAATGAGGAATGGAAATTCTTTGTTAACCATTTTAGCAGATTTGGGTTGACTGAAGAAGATGAAGAAGATATGATGATGGAAGATACTGCTGTAGCTGAAGACCCTCCGGAATTGAACCATGATGATATCTCTGATGCTGATGAAGAAAACCAAATGGATCCTACTGGAATTGTGCTCTCGCATTCTCTTCCTGCTCATCTTGGGCTTGACCCCATCAAGATGCAAGAAATGAGAATGTTGATGTTTTCTGATTTGGATGAGGAAGCCGAGGATATGAAAGAATTACCTGCACATTATAATCCATCATTTGGTAAAGAATACTCAAGATCTCCTTTAGAAAATGCTCAAAGGATGAGTTATCGATCTACTCCACCAGCTGTGCGAAAGACCCCTCTAGCATTGCTTGAGTACAAGCATGGTAGTTTTGACTCAAACTCTCCTGGAGCCATTCTAATGGCCCAGGAAAATAAAGCCTTGCCATTGAAGACACTAAAAGAAGGTTTTAAGCTTGATCTCAGTAGTGAAACACCAGTAACTAGAAAAGATTCTCGCAACATAGTTGATGCAGGTTTGTTAATGGGTAGGTCTTTTCGAGTAGGATGGGGCCCAAATGGAATTCTTGTCCATGCTGGCACACCAATAGGCAGTAATGGTTCCCAAAGGGTGCTGTCATCTGTAATTAATATGGAGAAGGTTGCTATTGACAATGTAGTCAGAGATAAAAATAACAAGGTTAGAGCAGAACTTGTTGAAACGGCTATCACTTCTCCATTGGAGCTTCACAAGGGACTGTTTCATGAAACAAAAGAAGTTGAAGTTGGATCCTTCAGTCTGAGACTTCAGAAGCTTGTCTCGAATCGGTTTATGCTATCAGATATTTGCAGGAGTTATGTAGATATTATTGAGAGGCAGCTGGAGGTTCCTGGTTTATCTTCCTCTGCATGTTTGGTTTTGCCACATCAAATTATGATTTGGGAATTGATAAAAGTTCTTTTCTCTGAAAGGGAAAATGGCGAGAAAATGGAATCTTTTGGTGCTGATGATGAGGTAGAAATGGTGCAGGATGAGAAGCTCCCTTCACAGGAAACTGACCCGGAAGCATTACCTCTAATTAGGAGGGCCGAGTTCAGTTACTGGTTGCAAGAAAATGTGCGCCATCGAGTAGAAGAAATCATCTCCTTGAATGAGTCCAATTATCTGCAATCCATATTATTACTTCTGAGTGGGCGGCAGCTGGATGAAGCTGTGGAACTGGCTGCTTCTCAGGGAGACGTGAGATTGGCTTGTTTGTTAAGTCAGTCTGGTGGGTCCATAGTTAATCGTTCTGACATTGCACAGCAGCTTGAGCTTTGGAGGATCAATGGACTGGATTTCAGTTTCATTGAGAAAGATAGGATAAGGCTTTATGAGTTGCTTGCGGGTAATGTCCACGGTGCTTTTCATGATATTGAAGTTGATTGGAAGAGGTTTCTTGGGTTATTGATGTGGTATCACTTACCACCTAATATTCCATTACCCATTGTTTTCCGCACATATCATGATCTTCTTAATGAGAATAAGGCTCCATATCCTGTTCCTGTTTACATGGATGGACGTGTAGAAGAGACTGTGGATCGGAGTGCAGAGAAACGTTATGACATATCATATTACCTTATGATGCTACATGGAAGTGAAGATAGTGAAGTTGATTTCCTGAAGACCATGTTCAGTGCTTTCTCGTCAACATATGATCCACTTGATTACCATATGATCTGGCATCAGCGTGCTGTGTTGGAAGCAGTTGGGGTCATCAGTGCCAATGATCTTCATGTTCTTGACATGGGATTTGTTTCCCAGTTGTTGTGTCTTGGGCAATGTCATTGGGCCATCTATGTGGTCCTTCACATGACCCATTGTGAAGACTTTCCATATCTTCATGCTAATCTTATTCGGGAAATTTTGTTCCAATATTGTGATTCTTGGAGCTCACAAATATCACAACGCCAATTCATTGAGGACTTGGGTATTCCTAAAGCATGGCTTCATGAGGCTATGGCAGTTTATTTCAATTATTATGGGGATCTTTCAAAGGCACTTGAACACTTCATTGAATGTGCAAACTGGCAGAAAGCGCATTCTATTTTCGTAACTTCTGTTGCTCACACATTATTCTTGTCAGCCAAACACTCAGAGATATGGAGGCTAGCAACTTCCATGGAGGACCACAAATCAGAAATTGAAAATTGGGACTTGGGAGCTGGCATCTACATTTCATTCTATCTAACAAGAAGTTCATTGCAGGGAGCTGACGATGCCATGAGTGAACTGGGTTCTGTTGAAAGCAAAAATGCTGCTTCCAGAGAGTTTCTTGGTCAGTTAAACTTGTCTTTGGCTGTTTGGGGTGCCAAGCTACCAATGGATGTGAGAGTCGTCTATTCGAAGATGGCGGATGAAATATGCAACTTGCTTTTGTCTGATATTAGCGAGGGCCCAACACGAGATGTTCAGTTAAGTTGCTTTGACACCGTTTTCAGTGCGCCCATACCTCAGGACCTTCGCTCAAATCATTTGCAAGATGTAGTGTCTCTCTTCACATGCTTTCTATCCGAAGTTGCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0007154 GO:0007165 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009733 GO:0009870 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015267 GO:0015288 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0022803 GO:0022829 GO:0022857 GO:0023052 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045088 GO:0045089 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0055085 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2 Nup96

Protein Analysis

1094

Amino Acids

123.61

Weight (kDa)

5.1

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoporin2 PF04096 104 - 244 8.7e-38 Nup98-96 autopeptidase S59
Nup96 PF12110 630 - 909 4.3e-76 Nuclear protein 96
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 981
AasI GACNNNNNNGTC 1 cut(s) 1394
AatII GACGTC 1 cut(s) 105
Acc36I ACCTGC 2 cut(s) 979, 1241
AccB1I GGYRCC 1 cut(s) 3065
AccB7I CCANNNNNTGG 1 cut(s) 992
AccIII TCCGGA 1 cut(s) 790
AciI CCGC 7 cut(s) 56, 114, 484, 1912, 2102, 2212, 3110
AclI AACGTT 1 cut(s) 2314
AcoI YGGCCR 2 cut(s) 115, 535
AcsI RAATTY 5 cut(s) 199, 207, 698, 1299, 2619
AcuI CTGAAG 6 cut(s) 579, 756, 801, 1495, 1508, 2399
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 1094
AfiI CCNNNNNNNGG 4 cut(s) 388, 533, 992, 1765
AflIII ACRYGT 2 cut(s) 358, 2278
AjiI CACGTC 2 cut(s) 1957, 2279
AjnI CCWGG 6 cut(s) 367, 433, 537, 1123, 1143, 1606
AjuI GAANNNNNNNTTGG 2 cut(s) 1485, 1517
AloI GAACNNNNNNTCC 2 cut(s) 2609, 2641
Alw21I GWGCWC 3 cut(s) 661, 861, 2651
Alw26I GTCTC 9 cut(s) 248, 434, 598, 628, 1513, 1540, 1947, 2282, 3252
AlwNI CAGNNNCTG 1 cut(s) 1818
Ama87I CYCGRG 2 cut(s) 351, 381
Aor13HI TCCGGA 1 cut(s) 790
AoxI GGCC 8 cut(s) 115, 535, 541, 1140, 1288, 1803, 2547, 3151
ApaI GGGCCC 2 cut(s) 1292, 3155
ApeKI GCWGC 9 cut(s) 42, 308, 325, 347, 1594, 1915, 1940, 2023, 3014
ApoI RAATTY 5 cut(s) 199, 207, 698, 1299, 2619
ArsI GACNNNNNNTTYG 2 cut(s) 2492, 2524
AseI ATTAAT 1 cut(s) 1365
Asp700I GAANNNNTTC 2 cut(s) 1228, 2586
AspLEI GCGC 4 cut(s) 278, 1839, 2797, 3202
AsuC2I CCSGG 1 cut(s) 1778
AsuHPI GGTGA 1 cut(s) 508
AsuII TTCGAA 1 cut(s) 3101
AsuNHI GCTAGC 1 cut(s) 2866
AvaI CYCGRG 2 cut(s) 351, 381
AvaII GGWCC 5 cut(s) 234, 1992, 2560, 2884, 3214
AxyI CCTNAGG 1 cut(s) 3210
BaeGI GKGCMC 2 cut(s) 1292, 3155
BaeI ACNNNNGTAYC 6 cut(s) 144, 177, 570, 603, 759, 792
BalI TGGCCA 1 cut(s) 537
BamHI GGATCC 2 cut(s) 841, 1505
BanI GGYRCC 1 cut(s) 3065
BanII GRGCYC 4 cut(s) 661, 1292, 2651, 3155
BarI GAAGNNNNNNTAC 2 cut(s) 262, 294
BauI CACGAG 1 cut(s) 3159
BbsI GAAGAC 4 cut(s) 789, 1175, 2387, 2589
Bbv12I GWGCWC 3 cut(s) 661, 861, 2651
BbvI GCAGC 9 cut(s) 29, 320, 334, 337, 1606, 1927, 1927, 2035, 3001
BccI CCATC 9 cut(s) 126, 754, 905, 994, 1278, 1848, 2267, 2558, 3100
BceAI ACGGC 1 cut(s) 1455
BciT130I CCWGG 6 cut(s) 369, 435, 539, 1125, 1145, 1608
BciVI GTATCC 1 cut(s) 441
BcnI CCSGG 1 cut(s) 1778
BcoDI GTCTC 9 cut(s) 248, 434, 598, 628, 1513, 1540, 1947, 2282, 3252
BfaI CTAG 3 cut(s) 1079, 1221, 2867
BfmI CTRYAG 2 cut(s) 145, 774
BfoI RGCGCY 1 cut(s) 279
BfuAI ACCTGC 2 cut(s) 979, 1241
BfuI GTATCC 1 cut(s) 441
BglI GCCNNNNNGGC 1 cut(s) 39
BglII AGATCT 1 cut(s) 1010
Bme1390I CCNGG 7 cut(s) 369, 435, 539, 1125, 1145, 1608, 1778
Bme18I GGWCC 5 cut(s) 234, 1992, 2560, 2884, 3214
BmeT110I CYCGRG 2 cut(s) 351, 381
BmgBI CACGTC 2 cut(s) 1957, 2279
BmrFI CCNGG 7 cut(s) 369, 435, 539, 1125, 1145, 1608, 1778
BmrI ACTGGG 2 cut(s) 2512, 2999
BmsI GCATC 9 cut(s) 175, 561, 808, 894, 1237, 2331, 2449, 2934, 2965
BmtI GCTAGC 1 cut(s) 2870
BmuI ACTGGG 2 cut(s) 2512, 2999
BpiI GAAGAC 4 cut(s) 789, 1175, 2387, 2589
BpmI CTGGAG 2 cut(s) 1146, 1619
Bpu14I TTCGAA 1 cut(s) 3101
BpuEI CTTGAG 3 cut(s) 991, 1109, 2048
BpuMI CCSGG 1 cut(s) 1778
Bsa29I ATCGAT 1 cut(s) 1045
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 8 cut(s) 37, 109, 434, 538, 951, 1143, 2113, 2877
BsaWI WCCGGW 2 cut(s) 236, 790
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 4 cut(s) 388, 533, 992, 1765
Bse1I ACTGG 9 cut(s) 348, 853, 1214, 1823, 1941, 2055, 2518, 2789, 2994
Bse21I CCTNAGG 1 cut(s) 3210
Bse3DI GCAATG 5 cut(s) 180, 1082, 2013, 2543, 2957
BseAI TCCGGA 1 cut(s) 790
BseBI CCWGG 6 cut(s) 369, 435, 539, 1125, 1145, 1608
BseCI ATCGAT 1 cut(s) 1045
BseDI CCNNGG 8 cut(s) 37, 109, 434, 538, 951, 1143, 2113, 2877
BseGI GGATG 8 cut(s) 946, 1041, 1289, 1753, 1927, 2278, 3088, 3118
BseLI CCNNNNNNNGG 4 cut(s) 388, 533, 992, 1765
BseMI GCAATG 5 cut(s) 180, 1082, 2013, 2543, 2957
BseMII CTCAG 6 cut(s) 1213, 1508, 1895, 1961, 2865, 3224
BseNI ACTGG 9 cut(s) 348, 853, 1214, 1823, 1941, 2055, 2518, 2789, 2994
BseRI GAGGAG 2 cut(s) 13, 72
BseSI GKGCMC 2 cut(s) 1292, 3155
BseXI GCAGC 9 cut(s) 29, 320, 334, 337, 1606, 1927, 1927, 2035, 3001
BseYI CCCAGC 1 cut(s) 67
BsgI GTGCAG 3 cut(s) 957, 1763, 2325
BshFI GGCC 8 cut(s) 117, 537, 543, 1142, 1290, 1805, 2549, 3153
BshNI GGYRCC 1 cut(s) 3065
BshVI ATCGAT 1 cut(s) 1045
BsiHKAI GWGCWC 3 cut(s) 661, 861, 2651
BsiHKCI CYCGRG 2 cut(s) 351, 381
BsiSI CCGG 4 cut(s) 189, 237, 791, 1778
BslFI GGGAC 3 cut(s) 663, 1485, 2924
BslI CCNNNNNNNGG 4 cut(s) 388, 533, 992, 1765
BsmAI GTCTC 9 cut(s) 248, 434, 598, 628, 1513, 1540, 1947, 2282, 3252
BsmBI CGTCTC 1 cut(s) 1947
BsmFI GGGAC 3 cut(s) 663, 1485, 2924
BsmI GAATGC 2 cut(s) 865, 2797
BsnI GGCC 8 cut(s) 117, 537, 543, 1142, 1290, 1805, 2549, 3153
BsoBI CYCGRG 2 cut(s) 351, 381
Bsp119I TTCGAA 1 cut(s) 3101
Bsp120I GGGCCC 2 cut(s) 1288, 3151
Bsp1286I GDGCHC 5 cut(s) 661, 861, 1292, 2651, 3155
Bsp13I TCCGGA 1 cut(s) 790
Bsp19I CCATGG 3 cut(s) 37, 109, 2877
BspACI CCGC 7 cut(s) 56, 114, 484, 1912, 2102, 2212, 3110
BspANI GGCC 8 cut(s) 117, 537, 543, 1142, 1290, 1805, 2549, 3153
BspCNI CTCAG 6 cut(s) 1212, 1509, 1896, 1960, 2864, 3223
BspDI ATCGAT 1 cut(s) 1045
BspEI TCCGGA 1 cut(s) 790
BspHI TCATGA 4 cut(s) 1480, 2125, 2221, 2707
BspMI ACCTGC 2 cut(s) 979, 1241
BspOI GCTAGC 1 cut(s) 2870
BspT104I TTCGAA 1 cut(s) 3101
BspT107I GGYRCC 1 cut(s) 3065
BsrDI GCAATG 5 cut(s) 180, 1082, 2013, 2543, 2957
BsrI ACTGG 9 cut(s) 348, 853, 1214, 1823, 1941, 2055, 2518, 2789, 2994
BssECI CCNNGG 8 cut(s) 37, 109, 434, 538, 951, 1143, 2113, 2877
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 3159
BssT1I CCWWGG 3 cut(s) 37, 109, 2877
Bst2BI CACGAG 1 cut(s) 3159
Bst2UI CCWGG 6 cut(s) 369, 435, 539, 1125, 1145, 1608
Bst4CI ACNGT 6 cut(s) 133, 400, 1476, 2117, 2293, 3190
Bst6I CTCTTC 4 cut(s) 876, 2141, 2280, 3257
BstACI GRCGYC 1 cut(s) 102
BstBI TTCGAA 1 cut(s) 3101
BstC8I GCNNGC 7 cut(s) 488, 555, 1315, 2100, 2448, 2868, 2923
BstDEI CTNAG 6 cut(s) 1199, 1517, 1904, 1947, 2851, 3210
BstDSI CCRYGG 4 cut(s) 37, 109, 2113, 2877
BstF5I GGATG 8 cut(s) 946, 1041, 1289, 1753, 1927, 2278, 3088, 3118
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 4 cut(s) 278, 1839, 2797, 3202
BstMAI GTCTC 9 cut(s) 248, 434, 598, 628, 1513, 1540, 1947, 2282, 3252
BstMWI GCNNNNNNNGC 4 cut(s) 39, 2029, 2794, 2975
BstNI CCWGG 6 cut(s) 369, 435, 539, 1125, 1145, 1608
BstNSI RCATGY 2 cut(s) 1629, 3261
BstSCI CCNGG 7 cut(s) 367, 433, 537, 1123, 1143, 1606, 1776
BstSFI CTRYAG 2 cut(s) 145, 774
BstSLI GKGCMC 2 cut(s) 1292, 3155
BstV1I GCAGC 9 cut(s) 29, 320, 334, 337, 1606, 1927, 1927, 2035, 3001
BstV2I GAAGAC 4 cut(s) 789, 1175, 2387, 2589
BstX2I RGATCY 6 cut(s) 364, 419, 841, 1010, 1505, 2743
BstXI CCANNNNNNTGG 3 cut(s) 529, 1138, 2557
BstYI RGATCY 6 cut(s) 364, 419, 841, 1010, 1505, 2743
Bsu15I ATCGAT 1 cut(s) 1045
Bsu36I CCTNAGG 1 cut(s) 3210
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 8 cut(s) 117, 537, 543, 1142, 1290, 1805, 2549, 3153
BsuTUI ATCGAT 1 cut(s) 1045
BtgI CCRYGG 4 cut(s) 37, 109, 2113, 2877
BtrI CACGTC 2 cut(s) 1957, 2279
BtsCI GGATG 8 cut(s) 946, 1041, 1289, 1753, 1927, 2278, 3088, 3118
BtsIMutI CAGTG 3 cut(s) 2398, 2482, 3202
BveI ACCTGC 2 cut(s) 979, 1241
Cac8I GCNNGC 7 cut(s) 488, 555, 1315, 2100, 2448, 2868, 2923
CaiI CAGNNNCTG 1 cut(s) 1818
CciI TCATGA 4 cut(s) 1480, 2125, 2221, 2707
CfoI GCGC 4 cut(s) 278, 1839, 2797, 3202
ClaI ATCGAT 1 cut(s) 1045
Csp6I GTAC 1 cut(s) 1093
CviQI GTAC 1 cut(s) 1093
DdeI CTNAG 6 cut(s) 1199, 1517, 1904, 1947, 2851, 3210
DrdI GACNNNNNNGTC 1 cut(s) 1394
DseDI GACNNNNNNGTC 1 cut(s) 1394
EaeI YGGCCR 2 cut(s) 115, 535
Eam1104I CTCTTC 4 cut(s) 876, 2141, 2280, 3257
EarI CTCTTC 4 cut(s) 876, 2141, 2280, 3257
EciI GGCGGA 1 cut(s) 3125
Ecl136II GAGCTC 2 cut(s) 659, 2649
Eco130I CCWWGG 3 cut(s) 37, 109, 2877
Eco24I GRGCYC 4 cut(s) 661, 1292, 2651, 3155
Eco32I GATATC 1 cut(s) 811
Eco47I GGWCC 5 cut(s) 234, 1992, 2560, 2884, 3214
Eco53kI GAGCTC 2 cut(s) 659, 2649
Eco57I CTGAAG 6 cut(s) 579, 756, 801, 1495, 1508, 2399
Eco81I CCTNAGG 1 cut(s) 3210
Eco88I CYCGRG 2 cut(s) 351, 381
EcoICRI GAGCTC 2 cut(s) 659, 2649
EcoO109I RGGNCCY 4 cut(s) 541, 1288, 3151, 3214
EcoRI GAATTC 2 cut(s) 199, 1299
EcoRII CCWGG 6 cut(s) 367, 433, 537, 1123, 1143, 1606
EcoRV GATATC 1 cut(s) 811
EcoT14I CCWWGG 3 cut(s) 37, 109, 2877
EcoT38I GRGCYC 4 cut(s) 661, 1292, 2651, 3155
ErhI CCWWGG 3 cut(s) 37, 109, 2877
Esp3I CGTCTC 1 cut(s) 1947
FalI AAGNNNNNCTT 4 cut(s) 1000, 1032, 2688, 2720
FaqI GGGAC 3 cut(s) 663, 1485, 2924
FauI CCCGC 1 cut(s) 2095
FauNDI CATATG 2 cut(s) 2410, 2430
FokI GGATG 8 cut(s) 953, 1048, 1296, 1760, 1934, 2285, 3095, 3125
FriOI GRGCYC 4 cut(s) 661, 1292, 2651, 3155
FspBI CTAG 3 cut(s) 1079, 1221, 2867
GlaI GCGC 4 cut(s) 277, 1838, 2796, 3201
GsaI CCCAGC 1 cut(s) 71
GsuI CTGGAG 2 cut(s) 1146, 1619
HaeII RGCGCY 1 cut(s) 279
HaeIII GGCC 8 cut(s) 117, 537, 543, 1142, 1290, 1805, 2549, 3153
HapII CCGG 4 cut(s) 189, 237, 791, 1778
HhaI GCGC 4 cut(s) 278, 1839, 2797, 3202
Hin1I GRCGYC 1 cut(s) 102
Hin6I GCGC 4 cut(s) 276, 1837, 2795, 3200
HinP1I GCGC 4 cut(s) 276, 1837, 2795, 3200
HincII GTYRAC 4 cut(s) 598, 709, 732, 2406
HindII GTYRAC 4 cut(s) 598, 709, 732, 2406
HindIII AAGCTT 2 cut(s) 1190, 1529
HinfI GANTC 7 cut(s) 1112, 1229, 1540, 1709, 1871, 2639, 3090
HpaI GTTAAC 1 cut(s) 709
HpaII CCGG 4 cut(s) 189, 237, 791, 1778
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 7 cut(s) 598, 709, 732, 2113, 2266, 2406, 2987
Hpy8I GTNNAC 7 cut(s) 598, 709, 732, 2113, 2266, 2406, 2987
Hpy99I CGWCG 2 cut(s) 104, 107
HpyAV CCTTC 8 cut(s) 225, 339, 1175, 1369, 1519, 1770, 2573, 3227
HpyCH4III ACNGT 6 cut(s) 133, 400, 1476, 2117, 2293, 3190
HpyCH4IV ACGT 5 cut(s) 102, 358, 1956, 2278, 2314
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 2029, 2794, 2975
HpyF3I CTNAG 6 cut(s) 1199, 1517, 1904, 1947, 2851, 3210
HpySE526I ACGT 5 cut(s) 102, 358, 1956, 2278, 2314
Hsp92I GRCGYC 1 cut(s) 102
HspAI GCGC 4 cut(s) 276, 1837, 2795, 3200
Kpn2I TCCGGA 1 cut(s) 790
KspAI GTTAAC 1 cut(s) 709
LmnI GCTCC 8 cut(s) 656, 1127, 1459, 1761, 2251, 2646, 2918, 2966
Lsp1109I GCAGC 9 cut(s) 29, 320, 334, 337, 1606, 1927, 1927, 2035, 3001
LweI GCATC 9 cut(s) 175, 561, 808, 894, 1237, 2331, 2449, 2934, 2965
MaeI CTAG 3 cut(s) 1079, 1221, 2867
MaeII ACGT 5 cut(s) 102, 358, 1956, 2278, 2314
MaeIII GTNAC 6 cut(s) 160, 282, 562, 1216, 1814, 2809
MflI RGATCY 6 cut(s) 364, 419, 841, 1010, 1505, 2743
MhlI GDGCHC 5 cut(s) 661, 861, 1292, 2651, 3155
MlsI TGGCCA 1 cut(s) 537
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 3 cut(s) 1106, 1880, 3099
MmeI TCCRAC 2 cut(s) 1483, 2436
Mox20I TGGCCA 1 cut(s) 537
MroI TCCGGA 1 cut(s) 790
MroXI GAANNNNTTC 2 cut(s) 1228, 2586
MscI TGGCCA 1 cut(s) 537
MslI CAYNNNNRTG 5 cut(s) 902, 1136, 2352, 2445, 2555
Msp20I TGGCCA 1 cut(s) 537
MspA1I CMGCKG 4 cut(s) 311, 1061, 1597, 1918
MspI CCGG 4 cut(s) 189, 237, 791, 1778
MspR9I CCNGG 7 cut(s) 369, 435, 539, 1125, 1145, 1608, 1778
Mva1269I GAATGC 2 cut(s) 865, 2797
MvaI CCWGG 6 cut(s) 369, 435, 539, 1125, 1145, 1608
MwoI GCNNNNNNNGC 4 cut(s) 39, 2029, 2794, 2975
NciI CCSGG 1 cut(s) 1778
NcoI CCATGG 3 cut(s) 37, 109, 2877
NdeI CATATG 2 cut(s) 2410, 2430
NheI GCTAGC 1 cut(s) 2866
NmeAIII GCCGAG 2 cut(s) 976, 1831
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 2 cut(s) 1629, 3261
NspV TTCGAA 1 cut(s) 3101
PaeR7I CTCGAG 1 cut(s) 351
PagI TCATGA 4 cut(s) 1480, 2125, 2221, 2707
PctI GAATGC 2 cut(s) 865, 2797
PdmI GAANNNNTTC 2 cut(s) 1228, 2586
PfeI GAWTC 4 cut(s) 1229, 1540, 1709, 2639
PflFI GACNNNGTC 1 cut(s) 104
PflMI CCANNNNNTGG 1 cut(s) 992
PfoI TCCNGGA 1 cut(s) 1123
PleI GAGTC 3 cut(s) 1106, 1879, 3098
PpsI GAGTC 3 cut(s) 1106, 1879, 3098
PpuMI RGGWCCY 1 cut(s) 3214
PshBI ATTAAT 1 cut(s) 1365
PsiI TTATAA 1 cut(s) 981
Psp124BI GAGCTC 2 cut(s) 661, 2651
Psp1406I AACGTT 1 cut(s) 2314
Psp5II RGGWCCY 1 cut(s) 3214
Psp6I CCWGG 6 cut(s) 367, 433, 537, 1123, 1143, 1606
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 6 cut(s) 367, 433, 537, 1123, 1143, 1606
PspOMI GGGCCC 2 cut(s) 1288, 3151
PspPPI RGGWCCY 1 cut(s) 3214
PstNI CAGNNNCTG 1 cut(s) 1818
PsuI RGATCY 6 cut(s) 364, 419, 841, 1010, 1505, 2743
PsyI GACNNNGTC 1 cut(s) 104
PvuII CAGCTG 4 cut(s) 311, 1061, 1597, 1918
RsaI GTAC 1 cut(s) 1094
RsaNI GTAC 1 cut(s) 1093
RseI CAYNNNNRTG 5 cut(s) 902, 1136, 2352, 2445, 2555
SacI GAGCTC 2 cut(s) 661, 2651
SchI GAGTC 3 cut(s) 1106, 1880, 3099
ScrFI CCNGG 7 cut(s) 369, 435, 539, 1125, 1145, 1608, 1778
SduI GDGCHC 5 cut(s) 661, 861, 1292, 2651, 3155
SfaNI GCATC 9 cut(s) 175, 561, 808, 894, 1237, 2331, 2449, 2934, 2965
SfcI CTRYAG 2 cut(s) 145, 774
Sfr274I CTCGAG 1 cut(s) 351
SfuI TTCGAA 1 cut(s) 3101
SinI GGWCC 5 cut(s) 234, 1992, 2560, 2884, 3214
SlaI CTCGAG 1 cut(s) 351
SmiMI CAYNNNNRTG 5 cut(s) 902, 1136, 2352, 2445, 2555
SmlI CTYRAG 4 cut(s) 351, 1006, 1088, 2027
SmoI CTYRAG 4 cut(s) 351, 1006, 1088, 2027
SsiI CCGC 7 cut(s) 56, 114, 484, 1912, 2102, 2212, 3110
SspI AATATT 4 cut(s) 619, 630, 2191, 2633
SspMI CTAG 3 cut(s) 1079, 1221, 2867
SstI GAGCTC 2 cut(s) 661, 2651
StyD4I CCNGG 7 cut(s) 367, 433, 537, 1123, 1143, 1606, 1776
StyI CCWWGG 3 cut(s) 37, 109, 2877
TaaI ACNGT 6 cut(s) 133, 400, 1476, 2117, 2293, 3190
TaiI ACGT 5 cut(s) 105, 361, 1959, 2281, 2317
TaqI TCGA 6 cut(s) 352, 1045, 1276, 1538, 1843, 3101
TatI WGTACW 1 cut(s) 1092
TauI GCSGC 3 cut(s) 59, 117, 1915
TfiI GAWTC 4 cut(s) 1229, 1540, 1709, 2639
TscAI CASTG 3 cut(s) 2398, 2482, 3202
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 9 cut(s) 42, 308, 325, 347, 1594, 1915, 1940, 2023, 3014
Tsp45I GTSAC 1 cut(s) 160
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 3 cut(s) 2398, 2482, 3202
Tth111I GACNNNGTC 1 cut(s) 104
Van91I CCANNNNNTGG 1 cut(s) 992
VpaK11BI GGWCC 5 cut(s) 234, 1992, 2560, 2884, 3214
VspI ATTAAT 1 cut(s) 1365
XapI RAATTY 5 cut(s) 199, 207, 698, 1299, 2619
XceI RCATGY 2 cut(s) 1629, 3261
XcmI CCANNNNNNNNNTGG 2 cut(s) 2986, 3076
XhoI CTCGAG 1 cut(s) 351
XmnI GAANNNNTTC 2 cut(s) 1228, 2586
XspI CTAG 3 cut(s) 1079, 1221, 2867
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.