Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012066

Physical Location & Seq

Genomic Coordinates Forward (+)

6977702 .. 6979942

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06990.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACCCTCTTATCCTTCACCCCCTCTCGCCACCTCAACCCCACCACCACTTGCTTCTCTATCCTACGCCCTCCCCCCCTCATCAACCCACTTTCCTCCTCCCTCTTCTTCTCCTCCCCCACCTCTTCCCCTCCAACACTTCCCATCTACCGCCTCCCACGCCCCTCCCTCCCCCTCCTCTCCCCTCCACGCGCCGCCTCTTCTTCCGCCGTCGATTTCCTCTTGCATGATGCTTCCGCCACCGCCCTCGTTCTCGCCGGCGCCTACACTCTCGTCCTCTGCTTCGATTATCTCACCAAGCGAAACGTCCTCCAACAGAGTCTGAGCAGAAAATTGGTCCACATATCATCTGGGTTGCTCTTCGTGCTTTCCTGGCCAATTTTCAGCACATCAACAGAAGCTCGCTACTTTGCCACTGTGGTTCCTCTCTTTAATGGCTTGAGGCTTCTTCTTAGCGGCCTCTCCTTGGTGCCCAATGAAGGATTAGTCAAATCGGTCACTCGTGAAGGAAACCCAAAGGAATTGCTTAGGGGACCCTTGTATTATGTTCTGATACTGATTGTATGCGCTCTAGTGTTTTGGCGTGAGTCTCCGGTTGGAGTGATCTCCTTAGCAATGATGTGTGGGGGTGATGGTGTTGCTGATATCATGGGTAGAAGATTTGGGTCCATAAAGATCCCCTATAATCAAAAGAAGAGTTGGGCTGGGAGCATTTCCATGTTCGTCTTTGGGTCCTTGGTTTCCCTTGCGATGCTCTACTATTACTCGTGTTTAGGATATTTCAATTTGGATTGGGCGAAGACGGTACAAAAGGTTGTATTCGTTTCTTTGGTGGCTACAGCAGTAGAATCCATTCCAATTACAGAGGTAGTGGATGACAATATATCTGTTCCGTTAGCAAGTATGGCAGCCGCATATTTAAGTTTCTCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006766 GO:0006775 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0010189 GO:0010276 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

33.89

Weight (kDa)

9.32

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04490 AT5G04490
fragaria_vesca	FvH4_7g06990 FvH4_7g06990 FvH4_7g06990
malus_domestica	MD07G1076000.v1.1
prunus_persica	Prupe.2G096700_v2.0.a1 Prupe.2G096700_v2.0.a1
pyrus_communis	pycom07g05990
rosa_chinensis	RchiOBHm_Chr1g0336921
rosa_laevigata	RLG00000029322
rosa_roxburghii	Rroxscaffold_4G00315190
rosa_rugosa	Rorug01G0128900 Rorug01G0128900
rosa_samantha	Rh1AG149900 Rh1CG141100 Rh1DG157000
rosa_wichuraiana	Rw1G012110 Rw1G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	260, 469
AccII	CGCG	1 cut(s)	192
AciI	CCGC	7 cut(s)	151, 195, 207, 237, 243, 456, 912
AclWI	GGATC	1 cut(s)	670
AcoI	YGGCCR	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	1 cut(s)	807
AfiI	CCNNNNNNNGG	2 cut(s)	466, 479
AgsI	TTSAA	1 cut(s)	784
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	1 cut(s)	401
AluI	AGCT	1 cut(s)	401
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	1 cut(s)	670
AlwNI	CAGNNNCTG	1 cut(s)	322
AoxI	GGCC	2 cut(s)	374, 457
ApeKI	GCWGC	1 cut(s)	908
Asp700I	GAANNNNTTC	1 cut(s)	852
AspLEI	GCGC	3 cut(s)	194, 263, 569
AspS9I	GGNCC	4 cut(s)	337, 533, 666, 732
AsuHPI	GGTGA	3 cut(s)	10, 286, 641
AvaII	GGWCC	4 cut(s)	337, 533, 666, 732
BaeGI	GKGCMC	1 cut(s)	474
BalI	TGGCCA	1 cut(s)	376
BanI	GGYRCC	2 cut(s)	260, 469
BauI	CACGAG	2 cut(s)	501, 766
BbsI	GAAGAC	1 cut(s)	806
BbvI	GCAGC	1 cut(s)	920
BccI	CCATC	2 cut(s)	152, 626
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	837
BfoI	RGCGCY	1 cut(s)	264
BisI	GCNGC	4 cut(s)	195, 457, 909, 912
BlsI	GCNGC	4 cut(s)	196, 458, 910, 913
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	4 cut(s)	337, 533, 666, 732
BmgT120I	GGNCC	4 cut(s)	337, 533, 666, 732
BmiI	GGNNCC	7 cut(s)	262, 423, 471, 534, 535, 667, 733
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	2 cut(s)	220, 741
BpiI	GAAGAC	1 cut(s)	806
Bpu10I	CCTNAGC	2 cut(s)	527, 610
BpuEI	CTTGAG	1 cut(s)	460
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	465, 735
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 479
Bse118I	RCCGGY	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	465, 735
BseGI	GGATG	1 cut(s)	880
BseLI	CCNNNNNNNGG	2 cut(s)	466, 479
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	1 cut(s)	314
BseRI	GAGGAG	3 cut(s)	88, 103, 167
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	920
BseYI	CCCAGC	1 cut(s)	704
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	376, 459
BshNI	GGYRCC	2 cut(s)	260, 469
BsiSI	CCGG	2 cut(s)	258, 593
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	2 cut(s)	466, 479
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	1 cut(s)	546
BsnI	GGCC	2 cut(s)	376, 459
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	603, 675
BspACI	CCGC	7 cut(s)	151, 195, 207, 237, 243, 456, 912
BspANI	GGCC	2 cut(s)	376, 459
BspCNI	CTCAG	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	7 cut(s)	262, 423, 471, 534, 535, 667, 733
BspPI	GGATC	1 cut(s)	670
BspQI	GCTCTTC	1 cut(s)	365
BspT107I	GGYRCC	2 cut(s)	260, 469
BsrDI	GCAATG	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	465, 735
BssMI	GATC	2 cut(s)	603, 675
BssNI	GRCGYC	1 cut(s)	261
BssSI	CACGAG	2 cut(s)	501, 766
BssT1I	CCWWGG	2 cut(s)	465, 735
Bst2BI	CACGAG	2 cut(s)	501, 766
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	418, 805
Bst6I	CTCTTC	5 cut(s)	110, 130, 205, 365, 689
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	259, 403
BstDEI	CTNAG	4 cut(s)	323, 452, 527, 610
BstF5I	GGATG	1 cut(s)	880
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	3 cut(s)	194, 263, 569
BstKTI	GATC	2 cut(s)	606, 678
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	2 cut(s)	603, 675
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 364, 373, 905
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	1 cut(s)	837
BstSLI	GKGCMC	1 cut(s)	474
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	920
BstV2I	GAAGAC	1 cut(s)	806
BstX2I	RGATCY	1 cut(s)	675
BstYI	RGATCY	1 cut(s)	675
BsuRI	GGCC	2 cut(s)	376, 459
BtgZI	GCGATG	1 cut(s)	764
BtsCI	GGATG	1 cut(s)	880
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	2 cut(s)	259, 403
CaiI	CAGNNNCTG	1 cut(s)	322
CfoI	GCGC	3 cut(s)	194, 263, 569
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	4 cut(s)	337, 533, 666, 732
Csp6I	GTAC	1 cut(s)	806
CviAII	CATG	3 cut(s)	227, 649, 718
CviJI	RGCY	8 cut(s)	376, 401, 438, 445, 459, 704, 836, 911
CviKI_1	RGCY	8 cut(s)	376, 401, 438, 445, 459, 704, 836, 911
CviQI	GTAC	1 cut(s)	806
DdeI	CTNAG	4 cut(s)	323, 452, 527, 610
DinI	GGCGCC	1 cut(s)	262
DpnI	GATC	2 cut(s)	605, 677
DpnII	GATC	2 cut(s)	603, 675
EaeI	YGGCCR	1 cut(s)	374
Eam1104I	CTCTTC	5 cut(s)	110, 130, 205, 365, 689
EarI	CTCTTC	5 cut(s)	110, 130, 205, 365, 689
EciI	GGCGGA	2 cut(s)	196, 226
Eco130I	CCWWGG	2 cut(s)	465, 735
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	4 cut(s)	337, 533, 666, 732
EcoO109I	RGGNCCY	2 cut(s)	533, 732
EcoRII	CCWGG	1 cut(s)	371
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	2 cut(s)	465, 735
EgeI	GGCGCC	1 cut(s)	262
EheI	GGCGCC	1 cut(s)	262
ErhI	CCWWGG	2 cut(s)	465, 735
FaeI	CATG	3 cut(s)	230, 652, 721
FalI	AAGNNNNNCTT	1 cut(s)	913
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	3 cut(s)	226, 648, 717
Fnu4HI	GCNGC	4 cut(s)	195, 457, 909, 912
FokI	GGATG	1 cut(s)	887
Fsp4HI	GCNGC	4 cut(s)	195, 457, 909, 912
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	3 cut(s)	193, 262, 568
GluI	GCNGC	4 cut(s)	195, 457, 909, 912
GsaI	CCCAGC	1 cut(s)	708
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	376, 459
HapII	CCGG	2 cut(s)	258, 593
HhaI	GCGC	3 cut(s)	194, 263, 569
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	230, 652, 721
Hin6I	GCGC	3 cut(s)	192, 261, 567
HinP1I	GCGC	3 cut(s)	192, 261, 567
HinfI	GANTC	3 cut(s)	319, 587, 848
HpaII	CCGG	2 cut(s)	258, 593
HphI	GGTGA	3 cut(s)	10, 286, 641
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	324, 552
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	25, 473, 500
HpyCH4III	ACNGT	2 cut(s)	418, 805
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 364, 373, 905
HpyF3I	CTNAG	4 cut(s)	323, 452, 527, 610
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	230, 652, 721
HspAI	GCGC	3 cut(s)	192, 261, 567
KasI	GGCGCC	1 cut(s)	260
KflI	GGGWCCC	1 cut(s)	533
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	603, 675
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	1 cut(s)	708
LpnPI	CCDG	6 cut(s)	271, 336, 358, 385, 606, 690
Lsp1109I	GCAGC	1 cut(s)	920
LweI	GCATC	2 cut(s)	220, 741
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	2 cut(s)	605, 677
MboI	GATC	2 cut(s)	603, 675
MflI	RGATCY	1 cut(s)	675
MhlI	GDGCHC	1 cut(s)	474
MlsI	TGGCCA	1 cut(s)	376
MluCI	AATT	5 cut(s)	332, 378, 521, 784, 858
MluNI	TGGCCA	1 cut(s)	376
Mly113I	GGCGCC	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	328, 596
MmeI	TCCRAC	3 cut(s)	158, 337, 577
Mox20I	TGGCCA	1 cut(s)	376
MreI	CGCCGGCG	1 cut(s)	257
MroNI	GCCGGC	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	852
MscI	TGGCCA	1 cut(s)	376
MseI	TTAA	2 cut(s)	432, 920
MslI	CAYNNNNRTG	1 cut(s)	716
Msp20I	TGGCCA	1 cut(s)	376
MspI	CCGG	2 cut(s)	258, 593
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	159, 364, 373, 905
NaeI	GCCGGC	1 cut(s)	259
NarI	GGCGCC	1 cut(s)	261
NdeII	GATC	2 cut(s)	603, 675
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	3 cut(s)	230, 652, 721
NlaIV	GGNNCC	7 cut(s)	262, 423, 471, 534, 535, 667, 733
NmuCI	GTSAC	1 cut(s)	496
PciSI	GCTCTTC	1 cut(s)	365
PdiI	GCCGGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	1 cut(s)	848
PkrI	GCNGC	4 cut(s)	196, 458, 910, 913
PleI	GAGTC	2 cut(s)	327, 595
PluTI	GGCGCC	1 cut(s)	264
PpsI	GAGTC	2 cut(s)	327, 595
PpuMI	RGGWCCY	2 cut(s)	533, 732
Psp5II	RGGWCCY	2 cut(s)	533, 732
Psp6I	CCWGG	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	704
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	7 cut(s)	262, 423, 471, 534, 535, 667, 733
PspPI	GGNCC	4 cut(s)	337, 533, 666, 732
PspPPI	RGGWCCY	2 cut(s)	533, 732
PstNI	CAGNNNCTG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	675
RsaI	GTAC	1 cut(s)	807
RsaNI	GTAC	1 cut(s)	806
RseI	CAYNNNNRTG	1 cut(s)	716
SapI	GCTCTTC	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	432, 920
SatI	GCNGC	4 cut(s)	195, 457, 909, 912
Sau3AI	GATC	2 cut(s)	603, 675
Sau96I	GGNCC	4 cut(s)	337, 533, 666, 732
SchI	GAGTC	2 cut(s)	328, 596
ScrFI	CCNGG	1 cut(s)	373
SduI	GDGCHC	1 cut(s)	474
SetI	ASST	6 cut(s)	36, 125, 309, 403, 816, 870
SfaNI	GCATC	2 cut(s)	220, 741
SfcI	CTRYAG	1 cut(s)	837
SfoI	GGCGCC	1 cut(s)	262
SgrAI	CRCCGGYG	1 cut(s)	257
SinI	GGWCC	4 cut(s)	337, 533, 666, 732
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	5 cut(s)	332, 378, 521, 784, 858
SsiI	CCGC	7 cut(s)	151, 195, 207, 237, 243, 456, 912
SspDI	GGCGCC	1 cut(s)	260
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	1 cut(s)	371
StyI	CCWWGG	2 cut(s)	465, 735
TaaI	ACNGT	2 cut(s)	418, 805
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	2 cut(s)	213, 285
TaqII	GACCGA	1 cut(s)	484
TasI	AATT	5 cut(s)	332, 378, 521, 784, 858
TauI	GCSGC	3 cut(s)	197, 459, 914
TfiI	GAWTC	1 cut(s)	848
Tru1I	TTAA	2 cut(s)	432, 920
Tru9I	TTAA	2 cut(s)	432, 920
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	1 cut(s)	908
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	1 cut(s)	492
TspGWI	ACGGA	1 cut(s)	882
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	4 cut(s)	337, 533, 666, 732
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.