Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013995

Physical Location & Seq

Genomic Coordinates Reverse (-)

1828150 .. 1829186

Gene Structure 1037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATGGATAGAGGAGAATGCTTGATGTCGATGAAGCTTAGACCGATGGTGACGAGGCCATCTTCGGATGGGACTTTATTTTGGCCGTTTAGGGAAGAGAGAGCGTTTGCGTCAGCTGAGGAGTATGGCGGCGGAGGTGGTTGCATGTGGCCACCGAGGTCTTACTCATGCAGCTTTTGCGGGAGAGAGTTCAAGTCGGCGCAAGCACTAGGCGGTCATATGAACGTTCATCGAAGAGACCGAGCTCGACTCAAACAACAATCATTATCACCTTCATCAACTGACCAAGCCACACCTCCTGAATGTGATCGTCAACAACAAGTTCTTGATGTGGGATCAAAGGTTCTTGTTCAAGAAGAAACAAGAAAGCCTAACGGAACCAAGAGGGAGATAAGTGATGTTTGTAATAACAACGTTTTAGAAAGTTCTATGAAAAGATATGAACATGACAATGGTGAAGTCAAGACTGACTTATCGGTCGGTCTACTGAGTACTGAGTTTGATCCTCGGAAGAAGCAACTAATCAACGGATCATCTTCGTCATGGAAGAGGGCAAAGACGGATGTGTCAAGATTTCCAATGATGTTAGGGTTGGTCATTGGAATTTCCGAGATCAACGGCCATCATGAGGAGTTGGATCTTGAGCTAAGGCTAGGAGCTGATCCGCCTAAGGTTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

226

Amino Acids

25.34

Weight (kDa)

7.63

Isoelectric Point (pI)

55.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	55 - 79	1.1e-06	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06070
fragaria_vesca	FvH4_7g23040
malus_domestica	MD01G1139000.v1.1 MD07G1203300.v1.1
prunus_persica	Prupe.2G239500_v2.0.a1
pyrus_communis	pycom07g19020
rosa_chinensis	RchiOBHm_Chr1g0368281
rosa_laevigata	RLG00000027224
rosa_multiflora	Rmu_sc0006033.1_g000016 Rmu_sc0009391.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288700
rosa_rugosa	Rorug01G0339900
rosa_samantha	Rh1AG347300 Rh1BG310300 Rh1CG325700 Rh1DG342100
rosa_wichuraiana	Rw1G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	476, 565
AccI	GTMKAC	1 cut(s)	484
AciI	CCGC	5 cut(s)	129, 132, 180, 213, 665
AclI	AACGTT	2 cut(s)	225, 414
AclWI	GGATC	5 cut(s)	343, 497, 538, 645, 656
AcoI	YGGCCR	3 cut(s)	83, 149, 619
AcsI	RAATTY	1 cut(s)	603
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	2 cut(s)	193, 353
AloI	GAACNNNNNNTCC	2 cut(s)	327, 359
AluBI	AGCT	6 cut(s)	37, 116, 174, 245, 646, 659
AluI	AGCT	6 cut(s)	37, 116, 174, 245, 646, 659
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	5 cut(s)	343, 497, 538, 645, 656
AoxI	GGCC	4 cut(s)	56, 83, 149, 619
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	202
AsuHPI	GGTGA	3 cut(s)	61, 261, 467
AxyI	CCTNAGG	1 cut(s)	669
BalI	TGGCCA	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	4 cut(s)	40, 62, 67, 630
BceAI	ACGGC	2 cut(s)	70, 634
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	3 cut(s)	209, 653, 679
BisI	GCNGC	2 cut(s)	130, 172
BlsI	GCNGC	2 cut(s)	131, 173
BmcAI	AGTACT	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	379
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
Bpu10I	CCTNAGC	2 cut(s)	117, 647
BpuEI	CTTGAG	1 cut(s)	662
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	155, 506
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse21I	CCTNAGG	1 cut(s)	669
BseDI	CCNNGG	2 cut(s)	155, 506
BseGI	GGATG	2 cut(s)	73, 568
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	3 cut(s)	108, 479, 486
BseRI	GAGGAG	3 cut(s)	27, 134, 644
BseXI	GCAGC	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	480
BshFI	GGCC	4 cut(s)	58, 85, 151, 621
BsiEI	CGRYCG	1 cut(s)	480
BsiHKAI	GWGCWC	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	4 cut(s)	58, 85, 151, 621
Bso31I	GGTCTC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	7 cut(s)	307, 335, 502, 530, 612, 637, 661
BspACI	CCGC	5 cut(s)	129, 132, 180, 213, 665
BspANI	GGCC	4 cut(s)	58, 85, 151, 621
BspCNI	CTCAG	3 cut(s)	109, 480, 487
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	1 cut(s)	379
BspPI	GGATC	5 cut(s)	343, 497, 538, 645, 656
BspTNI	GGTCTC	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	155, 506
BssMI	GATC	7 cut(s)	307, 335, 502, 530, 612, 637, 661
Bst6I	CTCTTC	3 cut(s)	90, 229, 542
BstAPI	GCANNNNNTGC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	6 cut(s)	38, 117, 488, 495, 647, 669
BstF5I	GGATG	2 cut(s)	73, 568
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	7 cut(s)	310, 338, 505, 533, 615, 640, 664
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	7 cut(s)	307, 335, 502, 530, 612, 637, 661
BstMCI	CGRYCG	1 cut(s)	480
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstNSI	RCATGY	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
Bsu36I	CCTNAGG	1 cut(s)	669
BsuRI	GGCC	4 cut(s)	58, 85, 151, 621
BtsCI	GGATG	2 cut(s)	73, 568
Cac8I	GCNNGC	1 cut(s)	204
CciI	TCATGA	1 cut(s)	625
CfoI	GCGC	1 cut(s)	202
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	5 cut(s)	145, 168, 446, 543, 626
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	6 cut(s)	38, 117, 488, 495, 647, 669
DpnI	GATC	7 cut(s)	309, 337, 504, 532, 614, 639, 663
DpnII	GATC	7 cut(s)	307, 335, 502, 530, 612, 637, 661
DrdI	GACNNNNNNGTC	2 cut(s)	476, 565
DseDI	GACNNNNNNGTC	2 cut(s)	476, 565
EaeI	YGGCCR	3 cut(s)	83, 149, 619
Eam1104I	CTCTTC	3 cut(s)	90, 229, 542
EarI	CTCTTC	3 cut(s)	90, 229, 542
EciI	GGCGGA	2 cut(s)	147, 654
Ecl136II	GAGCTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	245
Eco81I	CCTNAGG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	247
FaeI	CATG	5 cut(s)	148, 171, 449, 546, 629
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	5 cut(s)	144, 167, 445, 542, 625
FauI	CCCGC	1 cut(s)	173
FauNDI	CATATG	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	484
Fnu4HI	GCNGC	2 cut(s)	130, 172
FokI	GGATG	2 cut(s)	80, 575
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	130, 172
FspBI	CTAG	3 cut(s)	209, 653, 679
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	2 cut(s)	130, 172
HaeIII	GGCC	4 cut(s)	58, 85, 151, 621
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	5 cut(s)	148, 171, 449, 546, 629
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	2 cut(s)	314, 676
HindII	GTYRAC	2 cut(s)	314, 676
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	1 cut(s)	249
HpaI	GTTAAC	1 cut(s)	676
HphI	GGTGA	3 cut(s)	61, 261, 467
Hpy166II	GTNNAC	3 cut(s)	314, 485, 676
Hpy188I	TCNGA	3 cut(s)	67, 510, 610
Hpy188III	TCNNGA	7 cut(s)	299, 326, 353, 463, 570, 626, 641
Hpy8I	GTNNAC	3 cut(s)	314, 485, 676
HpyAV	CCTTC	1 cut(s)	282
HpyCH4IV	ACGT	2 cut(s)	225, 414
HpyCH4V	TGCA	2 cut(s)	144, 171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	6 cut(s)	38, 117, 488, 495, 647, 669
HpySE526I	ACGT	2 cut(s)	225, 414
Hsp92II	CATG	5 cut(s)	148, 171, 449, 546, 629
HspAI	GCGC	1 cut(s)	200
KspAI	GTTAAC	1 cut(s)	676
Kzo9I	GATC	7 cut(s)	307, 335, 502, 530, 612, 637, 661
LmnI	GCTCC	1 cut(s)	656
LpnPI	CCDG	1 cut(s)	312
Lsp1109I	GCAGC	1 cut(s)	183
MaeI	CTAG	3 cut(s)	209, 653, 679
MaeII	ACGT	2 cut(s)	225, 414
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	7 cut(s)	309, 337, 504, 532, 614, 639, 663
MboI	GATC	7 cut(s)	307, 335, 502, 530, 612, 637, 661
MboII	GAAGA	7 cut(s)	54, 107, 246, 368, 523, 528, 559
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	1 cut(s)	247
MlsI	TGGCCA	1 cut(s)	151
MluCI	AATT	1 cut(s)	603
MluNI	TGGCCA	1 cut(s)	151
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	615
Mox20I	TGGCCA	1 cut(s)	151
MscI	TGGCCA	1 cut(s)	151
MseI	TTAA	1 cut(s)	675
MslI	CAYNNNNRTG	1 cut(s)	450
Msp20I	TGGCCA	1 cut(s)	151
MspA1I	CMGCKG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	177
NdeI	CATATG	1 cut(s)	219
NdeII	GATC	7 cut(s)	307, 335, 502, 530, 612, 637, 661
NlaIII	CATG	5 cut(s)	148, 171, 449, 546, 629
NlaIV	GGNNCC	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	148
PagI	TCATGA	1 cut(s)	625
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PctI	GAATGC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	131, 173
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	247
Psp1406I	AACGTT	2 cut(s)	225, 414
PspN4I	GGNNCC	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
RseI	CAYNNNNRTG	1 cut(s)	450
SacI	GAGCTC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	2 cut(s)	130, 172
Sau3AI	GATC	7 cut(s)	307, 335, 502, 530, 612, 637, 661
ScaI	AGTACT	1 cut(s)	493
SchI	GAGTC	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	1 cut(s)	603
SsiI	CCGC	5 cut(s)	129, 132, 180, 213, 665
SspMI	CTAG	3 cut(s)	209, 653, 679
SstI	GAGCTC	1 cut(s)	247
TaiI	ACGT	2 cut(s)	228, 417
TaqI	TCGA	3 cut(s)	29, 232, 247
TaqII	GACCGA	4 cut(s)	58, 255, 466, 470
TasI	AATT	1 cut(s)	603
TatI	WGTACW	1 cut(s)	491
TauI	GCSGC	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	6 cut(s)	47, 218, 236, 264, 446, 456
TspGWI	ACGGA	3 cut(s)	390, 543, 575
XapI	RAATTY	1 cut(s)	603
XceI	RCATGY	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	484
XspI	CTAG	3 cut(s)	209, 653, 679
ZrmI	AGTACT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.