Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013995

Physical Location & Seq

Genomic Coordinates Forward (+)

21390269 .. 21392272

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGAAATGTCATAGTGAGAGGATTCAAACTCTAAACTTGGTTGCAAGGCACAGTATTCAATTCTATCAATTTTATTATTATCGATCACTTAAGTTACAAGTCCGGTTCACGAATCAGTATTTACTATTTAAGTTATTCTCAAATTATATATTCAACTCAGGATCTCATAAATACCTCTACTTTAGTCTTATAACACTGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGGTGGAGAAGATCTTGAACTCATCATCAGCACCATCAATGAACTCATCAGCACTCATGAGTGGTAGCTCATCAACAACATGGGAAGAGAAGGCTTTTGCTGAAGATGCAGCAGGGCATGGTCCTCTTGGTGGTTGCATATGGCCTCCAAGATCTTACTCATGCAGTTTTTGTATGAGAGAGTTCAGGTCAGCTCAAGCCTTGGGTGGCCACATGAATGTCCACAGGAGAGATAGAGCTAGACTTAAACAATGCTTTAACCCTAATATTACTGCCACTACACATGATCATCATCATGTCCCACATCATCATCGTCATCATCATATCCATGATGTACATGATCATCATCATCATCAGCAGCAGCAGCCTATAGCCTCCTCAGGTCACAATCTTGACCCTAATAATATCTCGTCAATATCATGTCCTTTCTCTTCACCACCTTCTTCTAGGGTTCCCCCATCTGCAACTAATTTACTAGCTATTCAAAAGGAGAATTCAGGTACTGAAGAACCAGCTTTTTTTCTCTCTCCTCCTTTTTCTTCTACTACTACTGCTACTGCGGCTCCATCTTGGAGAATATCAGGGAAGACTCCATATCCCTTCAAGGTAATTATGATCGATGGCGATCACTTTAATGTGGAAACCGACTTGTCGGTGGGCTTGAATATTTCGGCTGTCAGCAGAAGCAGATCACAAGGTGGTTCTTGTGGGGAAGAAGCAAGCATAAGTTGTAAGAGGCCTAGGAATACTACTAATAGAGCTACTTCTTCATCATTTCCATTTTTTCTACAACCAGAAGTAGAGGTAACTAGAGCACTTGCGGCAAGCTCCATGGAAGATTTGGATCGATTGAGCTCAGGCTTGTTGTATTATTGGCTAGCTAATCATCTTGATCATGTTAATTGTTGCACACTTTCAATTTCTGTTTTTTCTCCTCCACCTTTTTCCATCTCTTTCTTGGAAAAACCCTTAATTAAAGATTCAAGGGTAACAGAACATGCCAGATTGAGGTTCCATGTGCACATAATTGAATTCAAGATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

431

Amino Acids

48.22

Weight (kDa)

8.87

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06070
fragaria_vesca	FvH4_7g23040
malus_domestica	MD01G1139000.v1.1 MD07G1203300.v1.1
prunus_persica	Prupe.2G239500_v2.0.a1
pyrus_communis	pycom07g19020
rosa_chinensis	RchiOBHm_Chr1g0368281
rosa_laevigata	RLG00000027224
rosa_multiflora	Rmu_sc0006033.1_g000016 Rmu_sc0009391.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288700
rosa_rugosa	Rorug01G0339900
rosa_samantha	Rh1AG347300 Rh1BG310300 Rh1CG325700 Rh1DG342100
rosa_wichuraiana	Rw1G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	191
AciI	CCGC	2 cut(s)	806, 1067
AclWI	GGATC	2 cut(s)	169, 1098
AcoI	YGGCCR	1 cut(s)	454
AcsI	RAATTY	2 cut(s)	739, 1277
AcuI	CTGAAG	2 cut(s)	369, 771
AdeI	CACNNNGTG	1 cut(s)	944
AfaI	GTAC	2 cut(s)	582, 748
AfiI	CCNNNNNNNGG	2 cut(s)	377, 1254
AflII	CTTAAG	1 cut(s)	89
AluBI	AGCT	9 cut(s)	315, 440, 485, 725, 761, 1007, 1074, 1101, 1127
AluI	AGCT	9 cut(s)	315, 440, 485, 725, 761, 1007, 1074, 1101, 1127
Alw21I	GWGCWC	3 cut(s)	1063, 1103, 1269
Alw26I	GTCTC	1 cut(s)	205
Alw44I	GTGCAC	1 cut(s)	1265
AlwI	GGATC	2 cut(s)	169, 1098
AlwNI	CAGNNNCTG	1 cut(s)	749
AoxI	GGCC	3 cut(s)	389, 454, 983
ApaLI	GTGCAC	1 cut(s)	1265
ApeKI	GCWGC	4 cut(s)	356, 604, 607, 610
ApoI	RAATTY	2 cut(s)	739, 1277
AseI	ATTAAT	1 cut(s)	1287
AspA2I	CCTAGG	1 cut(s)	986
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	672
AsuNHI	GCTAGC	1 cut(s)	1123
AvaII	GGWCC	1 cut(s)	368
AvrII	CCTAGG	1 cut(s)	986
AxyI	CCTNAGG	1 cut(s)	625
BaeGI	GKGCMC	1 cut(s)	1269
BalI	TGGCCA	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	1103
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	3 cut(s)	1063, 1103, 1269
BbvI	GCAGC	4 cut(s)	368, 616, 619, 622
BccI	CCATC	5 cut(s)	289, 712, 820, 860, 1202
BclI	TGATCA	3 cut(s)	532, 586, 1138
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	6 cut(s)	486, 693, 722, 987, 1056, 1124
BfmI	CTRYAG	1 cut(s)	615
BfrI	CTTAAG	1 cut(s)	89
BglII	AGATCT	2 cut(s)	258, 398
BisI	GCNGC	6 cut(s)	357, 605, 608, 611, 807, 1068
BlnI	CCTAGG	1 cut(s)	986
BlsI	GCNGC	6 cut(s)	358, 606, 609, 612, 808, 1069
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	3 cut(s)	699, 810, 1259
BmsI	GCATC	1 cut(s)	343
BmtI	GCTAGC	1 cut(s)	1127
BpiI	GAAGAC	1 cut(s)	839
Bpu10I	CCTNAGC	1 cut(s)	1102
BpuEI	CTTGAG	1 cut(s)	426
Bsa29I	ATCGAT	3 cut(s)	82, 864, 1093
BsaBI	GATNNNNATC	4 cut(s)	537, 591, 870, 1089
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	3 cut(s)	447, 986, 1077
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	793, 823
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 1254
Bse1I	ACTGG	1 cut(s)	201
Bse21I	CCTNAGG	1 cut(s)	625
Bse8I	GATNNNNATC	4 cut(s)	537, 591, 870, 1089
BseCI	ATCGAT	3 cut(s)	82, 864, 1093
BseDI	CCNNGG	3 cut(s)	447, 986, 1077
BseJI	GATNNNNATC	4 cut(s)	537, 591, 870, 1089
BseLI	CCNNNNNNNGG	2 cut(s)	377, 1254
BseMII	CTCAG	3 cut(s)	171, 639, 1116
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	3 cut(s)	613, 765, 1170
BseSI	GKGCMC	1 cut(s)	1269
BseXI	GCAGC	4 cut(s)	368, 616, 619, 622
BshFI	GGCC	3 cut(s)	391, 456, 985
BshVI	ATCGAT	3 cut(s)	82, 864, 1093
BsiHKAI	GWGCWC	3 cut(s)	1063, 1103, 1269
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	2 cut(s)	377, 1254
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	3 cut(s)	391, 456, 985
Bso31I	GGTCTC	1 cut(s)	205
Bsp1286I	GDGCHC	3 cut(s)	1063, 1103, 1269
Bsp1407I	TGTACA	1 cut(s)	580
Bsp19I	CCATGG	1 cut(s)	1077
BspACI	CCGC	2 cut(s)	806, 1067
BspANI	GGCC	3 cut(s)	391, 456, 985
BspCNI	CTCAG	3 cut(s)	170, 638, 1115
BspDI	ATCGAT	3 cut(s)	82, 864, 1093
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	699, 810, 1259
BspOI	GCTAGC	1 cut(s)	1127
BspPI	GGATC	2 cut(s)	169, 1098
BspTI	CTTAAG	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	3 cut(s)	447, 986, 1077
BssT1I	CCWWGG	3 cut(s)	447, 986, 1077
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	2 cut(s)	327, 682
BstAFI	CTTAAG	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	580
BstC8I	GCNNGC	3 cut(s)	967, 1072, 1125
BstDEI	CTNAG	3 cut(s)	157, 625, 1102
BstDSI	CCRYGG	1 cut(s)	1077
BstMAI	GTCTC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	4 cut(s)	353, 610, 806, 1067
BstNSI	RCATGY	1 cut(s)	1247
BstSFI	CTRYAG	1 cut(s)	615
BstSLI	GKGCMC	1 cut(s)	1269
BstV1I	GCAGC	4 cut(s)	368, 616, 619, 622
BstV2I	GAAGAC	1 cut(s)	839
BstX2I	RGATCY	3 cut(s)	161, 258, 398
BstYI	RGATCY	3 cut(s)	161, 258, 398
Bsu15I	ATCGAT	3 cut(s)	82, 864, 1093
Bsu36I	CCTNAGG	1 cut(s)	625
BsuRI	GGCC	3 cut(s)	391, 456, 985
BsuTUI	ATCGAT	3 cut(s)	82, 864, 1093
BtgI	CCRYGG	1 cut(s)	1077
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	3 cut(s)	967, 1072, 1125
CaiI	CAGNNNCTG	1 cut(s)	749
CciI	TCATGA	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	368
ClaI	ATCGAT	3 cut(s)	82, 864, 1093
Csp6I	GTAC	2 cut(s)	581, 747
CviQI	GTAC	2 cut(s)	581, 747
DdeI	CTNAG	3 cut(s)	157, 625, 1102
DraIII	CACNNNGTG	1 cut(s)	944
EaeI	YGGCCR	1 cut(s)	454
Eam1104I	CTCTTC	2 cut(s)	327, 682
EarI	CTCTTC	2 cut(s)	327, 682
Ecl136II	GAGCTC	1 cut(s)	1101
Eco130I	CCWWGG	3 cut(s)	447, 986, 1077
Eco147I	AGGCCT	1 cut(s)	985
Eco24I	GRGCYC	1 cut(s)	1103
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	368
Eco53kI	GAGCTC	1 cut(s)	1101
Eco57I	CTGAAG	2 cut(s)	369, 771
Eco81I	CCTNAGG	1 cut(s)	625
EcoICRI	GAGCTC	1 cut(s)	1101
EcoRI	GAATTC	2 cut(s)	739, 1277
EcoT14I	CCWWGG	3 cut(s)	447, 986, 1077
EcoT38I	GRGCYC	1 cut(s)	1103
ErhI	CCWWGG	3 cut(s)	447, 986, 1077
FaqI	GGGAC	1 cut(s)	530
FauNDI	CATATG	1 cut(s)	386
FbaI	TGATCA	3 cut(s)	532, 586, 1138
Fnu4HI	GCNGC	6 cut(s)	357, 605, 608, 611, 807, 1068
FriOI	GRGCYC	1 cut(s)	1103
Fsp4HI	GCNGC	6 cut(s)	357, 605, 608, 611, 807, 1068
FspBI	CTAG	6 cut(s)	486, 693, 722, 987, 1056, 1124
GluI	GCNGC	6 cut(s)	357, 605, 608, 611, 807, 1068
HaeIII	GGCC	3 cut(s)	391, 456, 985
HapII	CCGG	1 cut(s)	103
HinfI	GANTC	4 cut(s)	22, 112, 835, 1226
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	672
Hpy166II	GTNNAC	3 cut(s)	108, 469, 1267
Hpy188III	TCNNGA	7 cut(s)	109, 159, 262, 304, 638, 1136, 1282
Hpy8I	GTNNAC	3 cut(s)	108, 469, 1267
HpyAV	CCTTC	3 cut(s)	331, 696, 856
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	7 cut(s)	44, 356, 384, 411, 710, 1155, 1267
HpyF10VI	GCNNNNNNNGC	4 cut(s)	353, 610, 806, 1067
HpyF3I	CTNAG	3 cut(s)	157, 625, 1102
Ksp22I	TGATCA	3 cut(s)	532, 586, 1138
LmnI	GCTCC	2 cut(s)	814, 1079
Lsp1109I	GCAGC	4 cut(s)	368, 616, 619, 622
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	6 cut(s)	486, 693, 722, 987, 1056, 1124
MaeIII	GTNAC	4 cut(s)	93, 629, 1051, 1234
MflI	RGATCY	3 cut(s)	161, 258, 398
MhlI	GDGCHC	3 cut(s)	1063, 1103, 1269
MlsI	TGGCCA	1 cut(s)	456
MluNI	TGGCCA	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	829
Mox20I	TGGCCA	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	456
MseI	TTAA	9 cut(s)	90, 129, 492, 504, 879, 1146, 1217, 1221, 1287
MslI	CAYNNNNRTG	4 cut(s)	462, 540, 573, 879
Msp20I	TGGCCA	1 cut(s)	456
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	4 cut(s)	353, 610, 806, 1067
NcoI	CCATGG	1 cut(s)	1077
NdeI	CATATG	1 cut(s)	386
NheI	GCTAGC	1 cut(s)	1123
NlaIV	GGNNCC	3 cut(s)	699, 810, 1259
NmuCI	GTSAC	1 cut(s)	629
NspI	RCATGY	1 cut(s)	1247
PacI	TTAATTAA	1 cut(s)	1221
PagI	TCATGA	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	985
PfeI	GAWTC	3 cut(s)	22, 112, 1226
PkrI	GCNGC	6 cut(s)	358, 606, 609, 612, 808, 1069
PleI	GAGTC	1 cut(s)	829
PpsI	GAGTC	1 cut(s)	829
PshBI	ATTAAT	1 cut(s)	1287
PsiI	TTATAA	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	1103
PspN4I	GGNNCC	3 cut(s)	699, 810, 1259
PspPI	GGNCC	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	3 cut(s)	161, 258, 398
RsaI	GTAC	2 cut(s)	582, 748
RsaNI	GTAC	2 cut(s)	581, 747
RseI	CAYNNNNRTG	4 cut(s)	462, 540, 573, 879
SacI	GAGCTC	1 cut(s)	1103
SaqAI	TTAA	9 cut(s)	90, 129, 492, 504, 879, 1146, 1217, 1221, 1287
SatI	GCNGC	6 cut(s)	357, 605, 608, 611, 807, 1068
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	1 cut(s)	829
SduI	GDGCHC	3 cut(s)	1063, 1103, 1269
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	1 cut(s)	615
SinI	GGWCC	1 cut(s)	368
SmiMI	CAYNNNNRTG	4 cut(s)	462, 540, 573, 879
SmlI	CTYRAG	2 cut(s)	89, 441
SmoI	CTYRAG	2 cut(s)	89, 441
SseBI	AGGCCT	1 cut(s)	985
SsiI	CCGC	2 cut(s)	806, 1067
SspI	AATATT	2 cut(s)	514, 913
SspMI	CTAG	6 cut(s)	486, 693, 722, 987, 1056, 1124
SstI	GAGCTC	1 cut(s)	1103
StuI	AGGCCT	1 cut(s)	985
StyI	CCWWGG	3 cut(s)	447, 986, 1077
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	3 cut(s)	82, 864, 1093
TatI	WGTACW	1 cut(s)	580
TauI	GCSGC	2 cut(s)	809, 1070
TfiI	GAWTC	3 cut(s)	22, 112, 1226
Tru1I	TTAA	9 cut(s)	90, 129, 492, 504, 879, 1146, 1217, 1221, 1287
Tru9I	TTAA	9 cut(s)	90, 129, 492, 504, 879, 1146, 1217, 1221, 1287
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	629
TseI	GCWGC	4 cut(s)	356, 604, 607, 610
Tsp45I	GTSAC	1 cut(s)	629
TspDTI	ATGAA	4 cut(s)	17, 302, 476, 1005
TspRI	CASTG	1 cut(s)	201
Vha464I	CTTAAG	1 cut(s)	89
VneI	GTGCAC	1 cut(s)	1265
VpaK11BI	GGWCC	1 cut(s)	368
VspI	ATTAAT	1 cut(s)	1287
XapI	RAATTY	2 cut(s)	739, 1277
XceI	RCATGY	1 cut(s)	1247
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1084, 1201
XmaJI	CCTAGG	1 cut(s)	986
XspI	CTAG	6 cut(s)	486, 693, 722, 987, 1056, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.