Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013995

Physical Location & Seq

Genomic Coordinates Forward (+)

28121362 .. 28122312

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1203300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAACAAGTTCAGTGCTGGGTGTGGCTAAACAGCAGGAAAGAGAAGATCTTGAACTCATCATCAGCACCATCAATGAACTCATCAGCACTCATGAGTAGTAGCTCATCAAGAACATGGGAAGAGAAGGCTTTTGCTGAAGATGCAGCAGGGCATGGCCCTCTTGGTGGTTGCATATGGCCTCCAAGATCTTACTCCTGCAGTTTTTGTATGAGAGAGTTCAGGTCAGCTCAAGCCTTGGGTGGCCACATGAATGTCCACAGGAGAGATAGAGCTAGACTTAAGCAATGCTTTAACCCTAATATTACTGCCACTACACATGATCATCATCATGTCCCACATCATCATCGTCATCATCATATCCATGATGTACATGATCATCATGATCATCATCAACCTATAGCTTCCTCAGGTCACAATCTTGACCCTAATAATATCTCGTCAATATCATGTCCTTTTTCTTCACCACGTTCTTCTAGGGTTCCCTCATCTGCAGCTAATTTACTAGCTATTCAAAAGGAGAATTCAGGTACTGAAGAACCAGCTTTTTTTCTCTCTCCTCTTTCTTCTACTACTACTGCTACCGCAGCTCCATCTTGGTCATCAGATAATTCAAAACCTGATGACCAATTGGAAAAGGAGAATATCAGGGAAGACTCCATATCCCTTCAAGGTAATTATGATCATGGCGATCACTTTAATGTGGAAACCAACTTGTCGGTGGGCTTGAATATTTCGGCTGTCAGCAGAAGCAGATCACAAGGTGGTTCTTGTGGGGAAGAAGCAAGCATAAGTTGTAAGAGGCCTAGGAATACTACTAATAGAGCTATTTCTTCATCATTTCCATTTTTTCTACAACCAGAAGTAGAGGTAACTACAGCACTTGCGGCAAGCTCCATGGAAGATTTGGATCTTGAGCTCAGGCTTGGTGACCCTCCCAAGGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

317

Amino Acids

34.83

Weight (kDa)

6.41

Isoelectric Point (pI)

69.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06070
fragaria_vesca	FvH4_7g23040
malus_domestica	MD01G1139000.v1.1 MD07G1203300.v1.1
prunus_persica	Prupe.2G239500_v2.0.a1
pyrus_communis	pycom07g19020
rosa_chinensis	RchiOBHm_Chr1g0368281
rosa_laevigata	RLG00000027224
rosa_multiflora	Rmu_sc0006033.1_g000016 Rmu_sc0009391.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288700
rosa_rugosa	Rorug01G0339900
rosa_samantha	Rh1AG347300 Rh1BG310300 Rh1CG325700 Rh1DG342100
rosa_wichuraiana	Rw1G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	585, 887
AclWI	GGATC	1 cut(s)	918
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	2 cut(s)	159, 555
AdeI	CACNNNGTG	1 cut(s)	764
AfaI	GTAC	2 cut(s)	372, 532
AfiI	CCNNNNNNNGG	2 cut(s)	167, 940
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	5 cut(s)	55, 515, 615, 671, 730
Alw21I	GWGCWC	1 cut(s)	921
AlwI	GGATC	1 cut(s)	918
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	4 cut(s)	157, 179, 244, 803
ApeKI	GCWGC	3 cut(s)	146, 494, 587
ApoI	RAATTY	1 cut(s)	523
Asp700I	GAANNNNTTC	1 cut(s)	9
AspA2I	CCTAGG	1 cut(s)	806
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	456, 941
AvrII	CCTAGG	1 cut(s)	806
AxyI	CCTNAGG	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	921
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	921
BbvI	GCAGC	3 cut(s)	158, 506, 599
BccI	CCATC	2 cut(s)	79, 601
BclI	TGATCA	4 cut(s)	322, 376, 385, 682
BfaI	CTAG	4 cut(s)	276, 477, 506, 807
BfmI	CTRYAG	4 cut(s)	199, 399, 492, 876
BfrI	CTTAAG	1 cut(s)	281
BglII	AGATCT	2 cut(s)	48, 188
BisI	GCNGC	4 cut(s)	147, 495, 588, 888
BlnI	CCTAGG	1 cut(s)	806
BlsI	GCNGC	4 cut(s)	148, 496, 589, 889
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	483
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	920
BpuEI	CTTGAG	2 cut(s)	216, 935
BsaBI	GATNNNNATC	3 cut(s)	327, 390, 909
BsaJI	CCNNGG	4 cut(s)	237, 806, 897, 939
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 940
Bse21I	CCTNAGG	1 cut(s)	409
Bse3DI	GCAATG	1 cut(s)	293
Bse8I	GATNNNNATC	3 cut(s)	327, 390, 909
BseDI	CCNNGG	4 cut(s)	237, 806, 897, 939
BseJI	GATNNNNATC	3 cut(s)	327, 390, 909
BseLI	CCNNNNNNNGG	2 cut(s)	167, 940
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	2 cut(s)	423, 934
BseRI	GAGGAG	1 cut(s)	549
BseXI	GCAGC	3 cut(s)	158, 506, 599
BseYI	CCCAGC	1 cut(s)	18
BshFI	GGCC	4 cut(s)	159, 181, 246, 805
BsiHKAI	GWGCWC	1 cut(s)	921
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	2 cut(s)	167, 940
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	4 cut(s)	159, 181, 246, 805
Bsp1286I	GDGCHC	1 cut(s)	921
Bsp1407I	TGTACA	1 cut(s)	370
Bsp143I	GATC	9 cut(s)	48, 188, 322, 376, 385, 682, 691, 755, 910
Bsp19I	CCATGG	1 cut(s)	897
BspACI	CCGC	2 cut(s)	585, 887
BspANI	GGCC	4 cut(s)	159, 181, 246, 805
BspCNI	CTCAG	2 cut(s)	422, 933
BspHI	TCATGA	2 cut(s)	93, 382
BspLI	GGNNCC	1 cut(s)	483
BspMAI	CTGCAG	2 cut(s)	203, 496
BspPI	GGATC	1 cut(s)	918
BspTI	CTTAAG	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	293
BsrGI	TGTACA	1 cut(s)	370
BssECI	CCNNGG	4 cut(s)	237, 806, 897, 939
BssMI	GATC	9 cut(s)	48, 188, 322, 376, 385, 682, 691, 755, 910
BssT1I	CCWWGG	4 cut(s)	237, 806, 897, 939
Bst6I	CTCTTC	1 cut(s)	117
BstAFI	CTTAAG	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	787, 892
BstDEI	CTNAG	2 cut(s)	409, 920
BstDSI	CCRYGG	1 cut(s)	897
BstEII	GGTNACC	1 cut(s)	929
BstKTI	GATC	9 cut(s)	51, 191, 325, 379, 388, 685, 694, 758, 913
BstMBI	GATC	9 cut(s)	48, 188, 322, 376, 385, 682, 691, 755, 910
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 587, 887
BstPI	GGTNACC	1 cut(s)	929
BstSFI	CTRYAG	4 cut(s)	199, 399, 492, 876
BstV1I	GCAGC	3 cut(s)	158, 506, 599
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	3 cut(s)	48, 188, 910
BstYI	RGATCY	3 cut(s)	48, 188, 910
Bsu36I	CCTNAGG	1 cut(s)	409
BsuRI	GGCC	4 cut(s)	159, 181, 246, 805
BtgI	CCRYGG	1 cut(s)	897
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	787, 892
CaiI	CAGNNNCTG	1 cut(s)	533
CciI	TCATGA	2 cut(s)	93, 382
Cfr13I	GGNCC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	371, 531
CviQI	GTAC	2 cut(s)	371, 531
DdeI	CTNAG	2 cut(s)	409, 920
DpnI	GATC	9 cut(s)	50, 190, 324, 378, 387, 684, 693, 757, 912
DpnII	GATC	9 cut(s)	48, 188, 322, 376, 385, 682, 691, 755, 910
DraIII	CACNNNGTG	1 cut(s)	764
EaeI	YGGCCR	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	919
Eco130I	CCWWGG	4 cut(s)	237, 806, 897, 939
Eco147I	AGGCCT	1 cut(s)	805
Eco24I	GRGCYC	1 cut(s)	921
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	2 cut(s)	159, 555
Eco81I	CCTNAGG	1 cut(s)	409
Eco91I	GGTNACC	1 cut(s)	929
EcoICRI	GAGCTC	1 cut(s)	919
EcoO65I	GGTNACC	1 cut(s)	929
EcoRI	GAATTC	1 cut(s)	523
EcoT14I	CCWWGG	4 cut(s)	237, 806, 897, 939
EcoT38I	GRGCYC	1 cut(s)	921
ErhI	CCWWGG	4 cut(s)	237, 806, 897, 939
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	1 cut(s)	320
FauNDI	CATATG	1 cut(s)	176
FbaI	TGATCA	4 cut(s)	322, 376, 385, 682
Fnu4HI	GCNGC	4 cut(s)	147, 495, 588, 888
FriOI	GRGCYC	1 cut(s)	921
Fsp4HI	GCNGC	4 cut(s)	147, 495, 588, 888
FspBI	CTAG	4 cut(s)	276, 477, 506, 807
GluI	GCNGC	4 cut(s)	147, 495, 588, 888
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	4 cut(s)	159, 181, 246, 805
HinfI	GANTC	1 cut(s)	656
HphI	GGTGA	2 cut(s)	456, 941
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	607
Hpy188III	TCNNGA	6 cut(s)	52, 94, 111, 383, 422, 914
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	2 cut(s)	121, 677
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	4 cut(s)	146, 174, 201, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 587, 887
HpyF3I	CTNAG	2 cut(s)	409, 920
HpySE526I	ACGT	1 cut(s)	469
Ksp22I	TGATCA	4 cut(s)	322, 376, 385, 682
Kzo9I	GATC	9 cut(s)	48, 188, 322, 376, 385, 682, 691, 755, 910
LmnI	GCTCC	2 cut(s)	595, 899
Lsp1109I	GCAGC	3 cut(s)	158, 506, 599
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	4 cut(s)	276, 477, 506, 807
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	3 cut(s)	413, 871, 929
MalI	GATC	9 cut(s)	50, 190, 324, 378, 387, 684, 693, 757, 912
MboI	GATC	9 cut(s)	48, 188, 322, 376, 385, 682, 691, 755, 910
MfeI	CAATTG	1 cut(s)	629
MflI	RGATCY	3 cut(s)	48, 188, 910
MhlI	GDGCHC	1 cut(s)	921
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	5 cut(s)	499, 523, 610, 629, 676
MluNI	TGGCCA	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	650
MnlI	CCTC	8 cut(s)	171, 192, 418, 496, 570, 795, 862, 945
Mox20I	TGGCCA	1 cut(s)	246
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	3 cut(s)	282, 294, 699
MslI	CAYNNNNRTG	4 cut(s)	252, 330, 363, 699
Msp20I	TGGCCA	1 cut(s)	246
MspCI	CTTAAG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	629
MwoI	GCNNNNNNNGC	3 cut(s)	143, 587, 887
NcoI	CCATGG	1 cut(s)	897
NdeI	CATATG	1 cut(s)	176
NdeII	GATC	9 cut(s)	48, 188, 322, 376, 385, 682, 691, 755, 910
NlaIV	GGNNCC	1 cut(s)	483
NmuCI	GTSAC	2 cut(s)	413, 929
PagI	TCATGA	2 cut(s)	93, 382
PceI	AGGCCT	1 cut(s)	805
PdmI	GAANNNNTTC	1 cut(s)	9
PkrI	GCNGC	4 cut(s)	148, 496, 589, 889
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
Psp124BI	GAGCTC	1 cut(s)	921
PspEI	GGTNACC	1 cut(s)	929
PspFI	CCCAGC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	1 cut(s)	158
PstI	CTGCAG	2 cut(s)	203, 496
PstNI	CAGNNNCTG	1 cut(s)	533
PsuI	RGATCY	3 cut(s)	48, 188, 910
RsaI	GTAC	2 cut(s)	372, 532
RsaNI	GTAC	2 cut(s)	371, 531
RseI	CAYNNNNRTG	4 cut(s)	252, 330, 363, 699
SacI	GAGCTC	1 cut(s)	921
SaqAI	TTAA	3 cut(s)	282, 294, 699
SatI	GCNGC	4 cut(s)	147, 495, 588, 888
Sau3AI	GATC	9 cut(s)	48, 188, 322, 376, 385, 682, 691, 755, 910
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	650
SduI	GDGCHC	1 cut(s)	921
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	4 cut(s)	199, 399, 492, 876
SmiMI	CAYNNNNRTG	4 cut(s)	252, 330, 363, 699
SmlI	CTYRAG	3 cut(s)	231, 281, 914
SmoI	CTYRAG	3 cut(s)	231, 281, 914
Sse9I	AATT	5 cut(s)	499, 523, 610, 629, 676
SseBI	AGGCCT	1 cut(s)	805
SsiI	CCGC	2 cut(s)	585, 887
SspI	AATATT	2 cut(s)	304, 733
SspMI	CTAG	4 cut(s)	276, 477, 506, 807
SstI	GAGCTC	1 cut(s)	921
StuI	AGGCCT	1 cut(s)	805
StyI	CCWWGG	4 cut(s)	237, 806, 897, 939
TaiI	ACGT	1 cut(s)	472
TasI	AATT	5 cut(s)	499, 523, 610, 629, 676
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	1 cut(s)	890
Tru1I	TTAA	3 cut(s)	282, 294, 699
Tru9I	TTAA	3 cut(s)	282, 294, 699
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	2 cut(s)	413, 929
TseI	GCWGC	3 cut(s)	146, 494, 587
Tsp45I	GTSAC	2 cut(s)	413, 929
TspDTI	ATGAA	3 cut(s)	92, 266, 825
TspRI	CASTG	1 cut(s)	20
Vha464I	CTTAAG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	523
XcmI	CCANNNNNNNNNTGG	2 cut(s)	718, 904
XmaJI	CCTAGG	1 cut(s)	806
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	4 cut(s)	276, 477, 506, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.