Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013995

Physical Location & Seq

Genomic Coordinates Forward (+)

25977691 .. 25978964

Gene Structure 1274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G239500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAACAAGCTCAGTGTCTGGTGTGGCAAATTAGCAGGAAAGATCAGATCTTCAAGTGCTCGTTATCATCACCATCATCAATGAACTCAACAACATGGGAAGAGAAGGCTTTTGCTGCAGATGCAGCTGGGCATGGTCCTCTTGGGGGTTGTATATGGCCTCCAAGATCTTATTCCTGCAGCTTTTGTATGAGAGAATTCAGGTCAGCTCAAGCCCTAGGGGGCCACATGAATGTCCACAGGAGAGACAGAGCCAGACTTAAGCAATGCCTTAACCCCAATAACACTGCTCACCATCATCATAGCCATGAGGCCCATCATCATCATCAACTTTCTAAACCATCTGATCATGATCATGATGATCATCATCAACCTATAACTTCCTCAATATCATGTCCTTTCGCATCACCTTCTAGGGCTCCCTCAGCTTTAGTCTCTATTCAGAAGGAGAATTCCTCAGGTGCTGAACGCGCTTTTCTCTCTCATCATTCTGCTACTTCTGCTCCATCTAAGTCTGATCATCAATTGGAAAAGAATATCATGACCAGAGAAGAAGAAGATTCTAGGTGCCTGCTAGGTAGTTATGATCATGGTGATTTTAATGTTGAGACCGATTTGTCTGTGGGGTTAAATATTTCGGTTGTTAACCGAAACAGATCACAAGGTGGGTCTTGTCGGGAAGAGGCAAGCATCAGTTGTAAAAGGCCAAAGACTGCTACTGCGGCTATTTCTTCATTTCCATTTTTTCTCCAATCAGAAGCAGAGGTGACTGGGCTTATGGCTAGCTCCTCCATGGAAGATTTGGATCTTGAGCTCAGGCTTGGTGACCCTCCCAAGGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

282

Amino Acids

31.02

Weight (kDa)

6.57

Isoelectric Point (pI)

58.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06070
fragaria_vesca	FvH4_7g23040
malus_domestica	MD01G1139000.v1.1 MD07G1203300.v1.1
prunus_persica	Prupe.2G239500_v2.0.a1
pyrus_communis	pycom07g19020
rosa_chinensis	RchiOBHm_Chr1g0368281
rosa_laevigata	RLG00000027224
rosa_multiflora	Rmu_sc0006033.1_g000016 Rmu_sc0009391.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288700
rosa_rugosa	Rorug01G0339900
rosa_samantha	Rh1AG347300 Rh1BG310300 Rh1CG325700 Rh1DG342100
rosa_wichuraiana	Rw1G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	616
AccB1I	GGYRCC	1 cut(s)	567
AccII	CGCG	1 cut(s)	471
AciI	CCGC	1 cut(s)	722
AclWI	GGATC	1 cut(s)	813
AcsI	RAATTY	2 cut(s)	197, 451
AdeI	CACNNNGTG	1 cut(s)	665
AfiI	CCNNNNNNNGG	2 cut(s)	146, 835
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
AluBI	AGCT	7 cut(s)	11, 128, 183, 209, 428, 786, 814
AluI	AGCT	7 cut(s)	11, 128, 183, 209, 428, 786, 814
Alw21I	GWGCWC	2 cut(s)	62, 816
Alw26I	GTCTC	3 cut(s)	240, 439, 602
AlwI	GGATC	1 cut(s)	813
AlwNI	CAGNNNCTG	2 cut(s)	19, 464
AoxI	GGCC	4 cut(s)	158, 223, 312, 704
ApeKI	GCWGC	3 cut(s)	116, 125, 180
ApoI	RAATTY	2 cut(s)	197, 451
AspA2I	CCTAGG	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	473
AspS9I	GGNCC	3 cut(s)	137, 223, 313
AsuHPI	GGTGA	6 cut(s)	63, 284, 399, 605, 778, 836
AsuNHI	GCTAGC	1 cut(s)	782
AvaII	GGWCC	1 cut(s)	137
AvrII	CCTAGG	1 cut(s)	217
AxyI	CCTNAGG	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	567
BanII	GRGCYC	2 cut(s)	421, 816
Bbv12I	GWGCWC	2 cut(s)	62, 816
BbvCI	CCTCAGC	1 cut(s)	424
BbvI	GCAGC	3 cut(s)	103, 137, 192
BccI	CCATC	5 cut(s)	82, 303, 324, 349, 514
BclI	TGATCA	5 cut(s)	346, 352, 361, 517, 586
BcoDI	GTCTC	3 cut(s)	240, 439, 602
BfaI	CTAG	5 cut(s)	218, 414, 564, 575, 783
BfmI	CTRYAG	2 cut(s)	117, 178
BfrI	CTTAAG	1 cut(s)	260
BglII	AGATCT	2 cut(s)	48, 167
BisI	GCNGC	4 cut(s)	117, 126, 181, 723
BlnI	CCTAGG	1 cut(s)	217
BlsI	GCNGC	4 cut(s)	118, 127, 182, 724
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	3 cut(s)	137, 223, 313
BmiI	GGNNCC	3 cut(s)	224, 420, 569
BmrI	ACTGGG	1 cut(s)	780
BmsI	GCATC	3 cut(s)	112, 413, 699
BmtI	GCTAGC	1 cut(s)	786
BmuI	ACTGGG	1 cut(s)	780
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
Bpu10I	CCTNAGC	2 cut(s)	424, 815
BpuEI	CTTGAG	2 cut(s)	195, 830
BsaBI	GATNNNNATC	4 cut(s)	351, 363, 366, 804
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	3 cut(s)	217, 792, 834
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 835
Bse1I	ACTGG	1 cut(s)	775
Bse21I	CCTNAGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	272
Bse8I	GATNNNNATC	4 cut(s)	351, 363, 366, 804
BseDI	CCNNGG	3 cut(s)	217, 792, 834
BseJI	GATNNNNATC	4 cut(s)	351, 363, 366, 804
BseLI	CCNNNNNNNGG	2 cut(s)	146, 835
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	4 cut(s)	26, 438, 471, 829
BseNI	ACTGG	1 cut(s)	775
BseRI	GAGGAG	1 cut(s)	778
BseXI	GCAGC	3 cut(s)	103, 137, 192
BseYI	CCCAGC	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	4 cut(s)	160, 225, 314, 706
BshNI	GGYRCC	1 cut(s)	567
BsiHKAI	GWGCWC	2 cut(s)	62, 816
BslI	CCNNNNNNNGG	2 cut(s)	146, 835
BsmAI	GTCTC	3 cut(s)	240, 439, 602
BsnI	GGCC	4 cut(s)	160, 225, 314, 706
Bso31I	GGTCTC	1 cut(s)	602
Bsp1286I	GDGCHC	3 cut(s)	62, 421, 816
Bsp19I	CCATGG	1 cut(s)	792
BspACI	CCGC	1 cut(s)	722
BspANI	GGCC	4 cut(s)	160, 225, 314, 706
BspCNI	CTCAG	4 cut(s)	25, 437, 470, 828
BspFNI	CGCG	1 cut(s)	471
BspHI	TCATGA	3 cut(s)	349, 355, 540
BspLI	GGNNCC	3 cut(s)	224, 420, 569
BspMAI	CTGCAG	2 cut(s)	121, 182
BspOI	GCTAGC	1 cut(s)	786
BspPI	GGATC	1 cut(s)	813
BspT107I	GGYRCC	1 cut(s)	567
BspTI	CTTAAG	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	775
BssECI	CCNNGG	3 cut(s)	217, 792, 834
BssT1I	CCWWGG	3 cut(s)	217, 792, 834
Bst6I	CTCTTC	2 cut(s)	96, 675
BstAFI	CTTAAG	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	572, 688, 784
BstDEI	CTNAG	5 cut(s)	12, 424, 457, 510, 815
BstDSI	CCRYGG	1 cut(s)	792
BstEII	GGTNACC	1 cut(s)	824
BstFNI	CGCG	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	473
BstMAI	GTCTC	3 cut(s)	240, 439, 602
BstMWI	GCNNNNNNNGC	7 cut(s)	116, 122, 125, 425, 470, 500, 722
BstPI	GGTNACC	1 cut(s)	824
BstSFI	CTRYAG	2 cut(s)	117, 178
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	3 cut(s)	103, 137, 192
BstX2I	RGATCY	3 cut(s)	48, 167, 805
BstYI	RGATCY	3 cut(s)	48, 167, 805
Bsu36I	CCTNAGG	1 cut(s)	457
BsuRI	GGCC	4 cut(s)	160, 225, 314, 706
BtgI	CCRYGG	1 cut(s)	792
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	20, 285
Cac8I	GCNNGC	3 cut(s)	572, 688, 784
CaiI	CAGNNNCTG	2 cut(s)	19, 464
CciI	TCATGA	3 cut(s)	349, 355, 540
CfoI	GCGC	1 cut(s)	473
Cfr13I	GGNCC	3 cut(s)	137, 223, 313
DdeI	CTNAG	5 cut(s)	12, 424, 457, 510, 815
DraIII	CACNNNGTG	1 cut(s)	665
DrdI	GACNNNNNNGTC	1 cut(s)	616
DseDI	GACNNNNNNGTC	1 cut(s)	616
Eam1104I	CTCTTC	2 cut(s)	96, 675
EarI	CTCTTC	2 cut(s)	96, 675
Ecl136II	GAGCTC	1 cut(s)	814
Eco130I	CCWWGG	3 cut(s)	217, 792, 834
Eco24I	GRGCYC	2 cut(s)	421, 816
Eco31I	GGTCTC	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	137
Eco53kI	GAGCTC	1 cut(s)	814
Eco81I	CCTNAGG	1 cut(s)	457
Eco91I	GGTNACC	1 cut(s)	824
EcoICRI	GAGCTC	1 cut(s)	814
EcoO65I	GGTNACC	1 cut(s)	824
EcoRI	GAATTC	2 cut(s)	197, 451
EcoT14I	CCWWGG	3 cut(s)	217, 792, 834
EcoT38I	GRGCYC	2 cut(s)	421, 816
ErhI	CCWWGG	3 cut(s)	217, 792, 834
FbaI	TGATCA	5 cut(s)	346, 352, 361, 517, 586
Fnu4HI	GCNGC	4 cut(s)	117, 126, 181, 723
FriOI	GRGCYC	2 cut(s)	421, 816
Fsp4HI	GCNGC	4 cut(s)	117, 126, 181, 723
FspBI	CTAG	5 cut(s)	218, 414, 564, 575, 783
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	4 cut(s)	117, 126, 181, 723
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	4 cut(s)	160, 225, 314, 706
HhaI	GCGC	1 cut(s)	473
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HinfI	GANTC	1 cut(s)	560
HpaI	GTTAAC	1 cut(s)	646
HphI	GGTGA	6 cut(s)	63, 284, 399, 605, 778, 836
Hpy166II	GTNNAC	2 cut(s)	238, 646
Hpy188I	TCNGA	5 cut(s)	48, 346, 444, 517, 757
Hpy188III	TCNNGA	5 cut(s)	350, 356, 541, 677, 809
Hpy8I	GTNNAC	2 cut(s)	238, 646
HpyAV	CCTTC	3 cut(s)	100, 420, 439
HpyCH4V	TGCA	3 cut(s)	119, 125, 180
HpyF10VI	GCNNNNNNNGC	7 cut(s)	116, 122, 125, 425, 470, 500, 722
HpyF3I	CTNAG	5 cut(s)	12, 424, 457, 510, 815
HspAI	GCGC	1 cut(s)	471
Ksp22I	TGATCA	5 cut(s)	346, 352, 361, 517, 586
KspAI	GTTAAC	1 cut(s)	646
LmnI	GCTCC	3 cut(s)	424, 508, 791
Lsp1109I	GCAGC	3 cut(s)	103, 137, 192
LweI	GCATC	3 cut(s)	112, 413, 699
MaeI	CTAG	5 cut(s)	218, 414, 564, 575, 783
MaeIII	GTNAC	2 cut(s)	766, 824
MboII	GAAGA	8 cut(s)	43, 113, 563, 566, 569, 692, 723, 809
MfeI	CAATTG	1 cut(s)	524
MflI	RGATCY	3 cut(s)	48, 167, 805
MhlI	GDGCHC	3 cut(s)	62, 421, 816
MluCI	AATT	4 cut(s)	30, 197, 451, 524
MseI	TTAA	5 cut(s)	261, 273, 600, 629, 645
MslI	CAYNNNNRTG	3 cut(s)	231, 306, 354
MspA1I	CMGCKG	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	260
MunI	CAATTG	1 cut(s)	524
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	7 cut(s)	116, 122, 125, 425, 470, 500, 722
NcoI	CCATGG	1 cut(s)	792
NheI	GCTAGC	1 cut(s)	782
NlaIV	GGNNCC	3 cut(s)	224, 420, 569
NmuCI	GTSAC	2 cut(s)	766, 824
PagI	TCATGA	3 cut(s)	349, 355, 540
PfeI	GAWTC	1 cut(s)	560
PkrI	GCNGC	4 cut(s)	118, 127, 182, 724
Psp124BI	GAGCTC	1 cut(s)	816
PspEI	GGTNACC	1 cut(s)	824
PspFI	CCCAGC	1 cut(s)	128
PspN4I	GGNNCC	3 cut(s)	224, 420, 569
PspPI	GGNCC	3 cut(s)	137, 223, 313
PstI	CTGCAG	2 cut(s)	121, 182
PstNI	CAGNNNCTG	2 cut(s)	19, 464
PsuI	RGATCY	3 cut(s)	48, 167, 805
PvuII	CAGCTG	1 cut(s)	128
RseI	CAYNNNNRTG	3 cut(s)	231, 306, 354
SacI	GAGCTC	1 cut(s)	816
SaqAI	TTAA	5 cut(s)	261, 273, 600, 629, 645
SatI	GCNGC	4 cut(s)	117, 126, 181, 723
Sau96I	GGNCC	3 cut(s)	137, 223, 313
SduI	GDGCHC	3 cut(s)	62, 421, 816
SfaNI	GCATC	3 cut(s)	112, 413, 699
SfcI	CTRYAG	2 cut(s)	117, 178
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	3 cut(s)	231, 306, 354
SmlI	CTYRAG	3 cut(s)	210, 260, 809
SmoI	CTYRAG	3 cut(s)	210, 260, 809
Sse9I	AATT	4 cut(s)	30, 197, 451, 524
SsiI	CCGC	1 cut(s)	722
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	5 cut(s)	218, 414, 564, 575, 783
SstI	GAGCTC	1 cut(s)	816
StyI	CCWWGG	3 cut(s)	217, 792, 834
TaqII	GACCGA	1 cut(s)	626
TasI	AATT	4 cut(s)	30, 197, 451, 524
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	5 cut(s)	261, 273, 600, 629, 645
Tru9I	TTAA	5 cut(s)	261, 273, 600, 629, 645
TscAI	CASTG	2 cut(s)	20, 292
TseFI	GTSAC	2 cut(s)	766, 824
TseI	GCWGC	3 cut(s)	116, 125, 180
Tsp45I	GTSAC	2 cut(s)	766, 824
TspDTI	ATGAA	3 cut(s)	98, 245, 723
TspRI	CASTG	2 cut(s)	20, 292
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	2 cut(s)	197, 451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	799
XmaJI	CCTAGG	1 cut(s)	217
XspI	CTAG	5 cut(s)	218, 414, 564, 575, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.