Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013995

Physical Location & Seq

Genomic Coordinates Forward (+)

24862776 .. 24863774

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1139000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAACAAGTTCAGTGCTGGGGGTGGCTAAACAGCAGGAAAGAGAAGATCTTCAACTCACCATCATCGTCATCGATGAACTCATCAACACTCATGAGTGGTAGCTCATCAACATGGGAAGAGAAGGCTTTCGCTGAAGATGCGGCAGGGCATGGTCCTCTTGGTGGTTGCATATGGCCTCCAATATCTTACTCTTGCAGTTTTTGTATGAGAGAGTTCAGGTCAGCTCAAGCCCTAGGCGGTCACATGAATGTCCACAGGAGAGACAGAGCTAGACTTAAGCAATGCCTTAACCATAATACTACTGTCACTACACATGATCCTCATCATGTCCCACACCATTATCATATCCATGATGCACATGATCATCATTATGTTCCACATCAACATCATATCCACGATACACATGACCATCATCATCATCAACATCATCAGCCTATAGCCTCCACAGTTCACAATCTTGACCCTAATAACATCTCGTCAATATCATATCCATTTTCTTCACCTTCTTCTTCTAGGGTTCCCTCGTCTGCAGATAATTTACTTGCTATTCAAAAGGAGAATTCAGGTACTGAAGAACCAACTTTTTTTCTCTCTCCTCCTTTTTCATCTACTACTGCTGCTACTGTAGCTCCATCTTGGTCATCAGATAATTCAAAACCCGATGACCAATTGGAAAAGGAGAATATGATCAGGGAAGATGACTCCGTATCACTTCTAGGTAATTATGATCATGGTGATCACTATAATGTCGAAACCGATTTGTCGATGGGCTTGAATATCTCGGTTGTTAGCAGAAGTAGATCACAAGGAGGGTCTTGTGGGGAAGAAGCAAGCATGAGTTGTAAGAGGCCTAAGACTACAACTAATGCAGCTATTTCTTCATCATTTCCATTTTCTCTGCAATCAGAAATAGAGGTAACTGGAGCACTTGTGGCAAGCTCCATGGAAGATTTGGATCTCGAGCTCAGGCTTGGTGACCCTCCAAAGGTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

333

Amino Acids

36.73

Weight (kDa)

5.96

Isoelectric Point (pI)

71.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06070
fragaria_vesca	FvH4_7g23040
malus_domestica	MD01G1139000.v1.1 MD07G1203300.v1.1
prunus_persica	Prupe.2G239500_v2.0.a1
pyrus_communis	pycom07g19020
rosa_chinensis	RchiOBHm_Chr1g0368281
rosa_laevigata	RLG00000027224
rosa_multiflora	Rmu_sc0006033.1_g000016 Rmu_sc0009391.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288700
rosa_rugosa	Rorug01G0339900
rosa_samantha	Rh1AG347300 Rh1BG310300 Rh1CG325700 Rh1DG342100
rosa_wichuraiana	Rw1G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	143, 240
AclWI	GGATC	2 cut(s)	314, 966
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	2 cut(s)	156, 594
AfaI	GTAC	1 cut(s)	571
AfiI	CCNNNNNNNGG	2 cut(s)	164, 988
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	4 cut(s)	55, 554, 657, 778
AluBI	AGCT	7 cut(s)	105, 227, 272, 632, 875, 942, 967
AluI	AGCT	7 cut(s)	105, 227, 272, 632, 875, 942, 967
Alw21I	GWGCWC	2 cut(s)	931, 969
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	2 cut(s)	314, 966
AlwNI	CAGNNNCTG	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	962
AoxI	GGCC	2 cut(s)	176, 851
ApeKI	GCWGC	2 cut(s)	620, 872
ApoI	RAATTY	1 cut(s)	562
Asp700I	GAANNNNTTC	3 cut(s)	9, 50, 128
AspA2I	CCTAGG	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	4 cut(s)	51, 495, 749, 989
AvaI	CYCGRG	1 cut(s)	962
AvaII	GGWCC	1 cut(s)	155
AvrII	CCTAGG	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	969
Bbv12I	GWGCWC	2 cut(s)	931, 969
BbvI	GCAGC	2 cut(s)	607, 884
BccI	CCATC	4 cut(s)	70, 420, 643, 763
BclI	TGATCA	4 cut(s)	364, 690, 730, 739
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	4 cut(s)	236, 273, 516, 719
BfmI	CTRYAG	3 cut(s)	438, 531, 627
BfrI	CTTAAG	1 cut(s)	278
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	3 cut(s)	144, 621, 873
BlnI	CCTAGG	1 cut(s)	235
BlsI	GCNGC	3 cut(s)	145, 622, 874
Bme18I	GGWCC	1 cut(s)	155
BmeT110I	CYCGRG	1 cut(s)	962
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	522
BmsI	GCATC	2 cut(s)	130, 346
BpmI	CTGGAG	1 cut(s)	945
Bpu10I	CCTNAGC	1 cut(s)	968
BpuEI	CTTGAG	1 cut(s)	213
Bsa29I	ATCGAT	1 cut(s)	74
BsaBI	GATNNNNATC	2 cut(s)	324, 957
BsaJI	CCNNGG	2 cut(s)	235, 945
BsaXI	ACNNNNNCTCC	4 cut(s)	616, 646, 918, 948
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 988
Bse1I	ACTGG	1 cut(s)	928
Bse3DI	GCAATG	1 cut(s)	290
Bse8I	GATNNNNATC	2 cut(s)	324, 957
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	235, 945
BseJI	GATNNNNATC	2 cut(s)	324, 957
BseLI	CCNNNNNNNGG	2 cut(s)	164, 988
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	1 cut(s)	982
BseNI	ACTGG	1 cut(s)	928
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	2 cut(s)	607, 884
BseYI	CCCAGC	1 cut(s)	18
BshFI	GGCC	2 cut(s)	178, 853
BshVI	ATCGAT	1 cut(s)	74
BsiHKAI	GWGCWC	2 cut(s)	931, 969
BsiHKCI	CYCGRG	1 cut(s)	962
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	2 cut(s)	164, 988
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	178, 853
BsoBI	CYCGRG	1 cut(s)	962
Bsp1286I	GDGCHC	2 cut(s)	931, 969
Bsp143I	GATC	8 cut(s)	48, 319, 364, 690, 730, 739, 803, 958
Bsp19I	CCATGG	1 cut(s)	945
BspACI	CCGC	2 cut(s)	143, 240
BspANI	GGCC	2 cut(s)	178, 853
BspCNI	CTCAG	1 cut(s)	981
BspDI	ATCGAT	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	522
BspMAI	CTGCAG	1 cut(s)	535
BspPI	GGATC	2 cut(s)	314, 966
BspTI	CTTAAG	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	928
BssECI	CCNNGG	2 cut(s)	235, 945
BssMI	GATC	8 cut(s)	48, 319, 364, 690, 730, 739, 803, 958
BssT1I	CCWWGG	2 cut(s)	235, 945
Bst4CI	ACNGT	3 cut(s)	307, 451, 628
Bst6I	CTCTTC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	835, 940
BstDEI	CTNAG	2 cut(s)	855, 968
BstDSI	CCRYGG	1 cut(s)	945
BstEII	GGTNACC	1 cut(s)	977
BstKTI	GATC	8 cut(s)	51, 322, 367, 693, 733, 742, 806, 961
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	8 cut(s)	48, 319, 364, 690, 730, 739, 803, 958
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 629, 935
BstPI	GGTNACC	1 cut(s)	977
BstSFI	CTRYAG	3 cut(s)	438, 531, 627
BstV1I	GCAGC	2 cut(s)	607, 884
BstX2I	RGATCY	2 cut(s)	48, 958
BstYI	RGATCY	2 cut(s)	48, 958
Bsu15I	ATCGAT	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	178, 853
BsuTUI	ATCGAT	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	945
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	835, 940
CaiI	CAGNNNCTG	1 cut(s)	572
CciI	TCATGA	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	155
ClaI	ATCGAT	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	570
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	2 cut(s)	855, 968
DpnI	GATC	8 cut(s)	50, 321, 366, 692, 732, 741, 805, 960
DpnII	GATC	8 cut(s)	48, 319, 364, 690, 730, 739, 803, 958
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	967
Eco130I	CCWWGG	2 cut(s)	235, 945
Eco147I	AGGCCT	1 cut(s)	853
Eco24I	GRGCYC	1 cut(s)	969
Eco47I	GGWCC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	967
Eco57I	CTGAAG	2 cut(s)	156, 594
Eco88I	CYCGRG	1 cut(s)	962
Eco91I	GGTNACC	1 cut(s)	977
EcoICRI	GAGCTC	1 cut(s)	967
EcoO65I	GGTNACC	1 cut(s)	977
EcoRI	GAATTC	1 cut(s)	562
EcoT14I	CCWWGG	2 cut(s)	235, 945
EcoT38I	GRGCYC	1 cut(s)	969
ErhI	CCWWGG	2 cut(s)	235, 945
FaqI	GGGAC	1 cut(s)	317
FauNDI	CATATG	1 cut(s)	173
FbaI	TGATCA	4 cut(s)	364, 690, 730, 739
Fnu4HI	GCNGC	3 cut(s)	144, 621, 873
FriOI	GRGCYC	1 cut(s)	969
Fsp4HI	GCNGC	3 cut(s)	144, 621, 873
FspBI	CTAG	4 cut(s)	236, 273, 516, 719
GluI	GCNGC	3 cut(s)	144, 621, 873
GsaI	CCCAGC	1 cut(s)	22
GsuI	CTGGAG	1 cut(s)	945
HaeIII	GGCC	2 cut(s)	178, 853
HinfI	GANTC	1 cut(s)	704
HphI	GGTGA	4 cut(s)	51, 495, 749, 989
Hpy166II	GTNNAC	2 cut(s)	256, 454
Hpy188I	TCNGA	2 cut(s)	649, 910
Hpy188III	TCNNGA	3 cut(s)	94, 461, 962
Hpy8I	GTNNAC	2 cut(s)	256, 454
HpyAV	CCTTC	2 cut(s)	118, 516
HpyCH4III	ACNGT	3 cut(s)	307, 451, 628
HpyCH4V	TGCA	6 cut(s)	171, 198, 359, 533, 872, 904
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 629, 935
HpyF3I	CTNAG	2 cut(s)	855, 968
Ksp22I	TGATCA	4 cut(s)	364, 690, 730, 739
Kzo9I	GATC	8 cut(s)	48, 319, 364, 690, 730, 739, 803, 958
LmnI	GCTCC	3 cut(s)	637, 926, 947
LpnPI	CCDG	9 cut(s)	4, 22, 132, 205, 244, 552, 679, 909, 955
Lsp1109I	GCAGC	2 cut(s)	607, 884
LweI	GCATC	2 cut(s)	130, 346
MaeI	CTAG	4 cut(s)	236, 273, 516, 719
MaeIII	GTNAC	4 cut(s)	242, 307, 919, 977
MalI	GATC	8 cut(s)	50, 321, 366, 692, 732, 741, 805, 960
MboI	GATC	8 cut(s)	48, 319, 364, 690, 730, 739, 803, 958
MfeI	CAATTG	1 cut(s)	671
MflI	RGATCY	2 cut(s)	48, 958
MhlI	GDGCHC	2 cut(s)	931, 969
MluCI	AATT	5 cut(s)	538, 562, 652, 671, 724
MlyI	GAGTC	1 cut(s)	698
MroXI	GAANNNNTTC	3 cut(s)	9, 50, 128
MseI	TTAA	2 cut(s)	279, 291
MslI	CAYNNNNRTG	5 cut(s)	112, 249, 351, 372, 747
MspCI	CTTAAG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	671
MwoI	GCNNNNNNNGC	3 cut(s)	140, 629, 935
NcoI	CCATGG	1 cut(s)	945
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	8 cut(s)	48, 319, 364, 690, 730, 739, 803, 958
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	3 cut(s)	242, 307, 977
PaeR7I	CTCGAG	1 cut(s)	962
PagI	TCATGA	1 cut(s)	93
PceI	AGGCCT	1 cut(s)	853
PdmI	GAANNNNTTC	3 cut(s)	9, 50, 128
PkrI	GCNGC	3 cut(s)	145, 622, 874
PleI	GAGTC	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	698
Psp124BI	GAGCTC	1 cut(s)	969
PspEI	GGTNACC	1 cut(s)	977
PspFI	CCCAGC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	2 cut(s)	48, 958
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
RseI	CAYNNNNRTG	5 cut(s)	112, 249, 351, 372, 747
SacI	GAGCTC	1 cut(s)	969
SaqAI	TTAA	2 cut(s)	279, 291
SatI	GCNGC	3 cut(s)	144, 621, 873
Sau3AI	GATC	8 cut(s)	48, 319, 364, 690, 730, 739, 803, 958
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	698
SduI	GDGCHC	2 cut(s)	931, 969
SfaNI	GCATC	2 cut(s)	130, 346
SfcI	CTRYAG	3 cut(s)	438, 531, 627
Sfr274I	CTCGAG	1 cut(s)	962
SinI	GGWCC	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	962
SmiMI	CAYNNNNRTG	5 cut(s)	112, 249, 351, 372, 747
SmlI	CTYRAG	3 cut(s)	228, 278, 962
SmoI	CTYRAG	3 cut(s)	228, 278, 962
Sse9I	AATT	5 cut(s)	538, 562, 652, 671, 724
SseBI	AGGCCT	1 cut(s)	853
SsiI	CCGC	2 cut(s)	143, 240
SspMI	CTAG	4 cut(s)	236, 273, 516, 719
SstI	GAGCTC	1 cut(s)	969
StuI	AGGCCT	1 cut(s)	853
StyI	CCWWGG	2 cut(s)	235, 945
TaaI	ACNGT	3 cut(s)	307, 451, 628
TaqI	TCGA	4 cut(s)	74, 753, 767, 963
TasI	AATT	5 cut(s)	538, 562, 652, 671, 724
TauI	GCSGC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	279, 291
Tru9I	TTAA	2 cut(s)	279, 291
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	3 cut(s)	242, 307, 977
TseI	GCWGC	2 cut(s)	620, 872
Tsp45I	GTSAC	3 cut(s)	242, 307, 977
TspDTI	ATGAA	4 cut(s)	92, 263, 597, 873
TspGWI	ACGGA	1 cut(s)	697
TspRI	CASTG	1 cut(s)	20
Vha464I	CTTAAG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	952
XhoI	CTCGAG	1 cut(s)	962
XmaJI	CCTAGG	1 cut(s)	235
XmnI	GAANNNNTTC	3 cut(s)	9, 50, 128
XspI	CTAG	4 cut(s)	236, 273, 516, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.