Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013995

Physical Location & Seq

Genomic Coordinates Forward (+)

18065225 .. 18066657

Gene Structure 1433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTTGAAGCAGTACTGCTACTCCTCGTCGTCGCGATCGTCGATGAACTCAGTCATGAGTATCTCATCCGCGACATGGGAAGAGAAGGCTTTCGCTGAAGACGCAGCTGGTGCGCTTGGTGGCGGTGGTTGCATATGGCCGCCGAGGTCTTATTCTTGCAGTTTTTGTATGAGGGAGTTCAGGTCGGCTCAAGCTCTTGGGGGTCACATGAATGTTCACAGAAGAGACAGAGCTAGACTCAAGCAATGCCTCCACAACACTAGTGGTACTGCTACTCCTAAACTAGCTACAGATCATGTCCCTCATCACCTTAGAAATCATAGCCATGGCTTTGGTGCGATGACTTGCCCTTTTTCAGCTCCTAGGGCTTTTATCTCTCCTTATTCTTCTTCAAATTCTTGCTCAACTGCTGCTGCTGCTGCTGCCGCTGCCGCTGATCGATCGGAGAAGAATATCATGGTGATGGGGTCATCATCAGACGAAGAAGACCAATCTGTTATTAGCCTGATGGGAGGTGATCAAGTTGGGGAATATGTCGAAACCGATTTGACAGTGGGGTTGATTAACACAGTTGTTAGAGGAAACAGACAATTAGCTGGGTCTTGTGGGGAAGAGGCAAGCACTTGTAAAAGGCCTAAGATTGCTTCTGCTATGAACTCAGCACCATTTCCATTCTTTCTCCGACCTGCAGAGGTAAGTGGACTTATGGCTACAGCTAACTCCATGGAAGATTTGGATCTTGAGCTCAGGCTTGGTGACCCAACTCCCAAGATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

260

Amino Acids

27.65

Weight (kDa)

7.06

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06070
fragaria_vesca	FvH4_7g23040
malus_domestica	MD01G1139000.v1.1 MD07G1203300.v1.1
prunus_persica	Prupe.2G239500_v2.0.a1
pyrus_communis	pycom07g19020
rosa_chinensis	RchiOBHm_Chr1g0368281
rosa_laevigata	RLG00000027224
rosa_multiflora	Rmu_sc0006033.1_g000016 Rmu_sc0009391.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288700
rosa_rugosa	Rorug01G0339900
rosa_samantha	Rh1AG347300 Rh1BG310300 Rh1CG325700 Rh1DG342100
rosa_wichuraiana	Rw1G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
AccII	CGCG	2 cut(s)	34, 71
AciI	CCGC	5 cut(s)	69, 123, 140, 426, 432
AclWI	GGATC	1 cut(s)	744
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	2 cut(s)	14, 268
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	2 cut(s)	7, 393
AhlI	ACTAGT	1 cut(s)	260
AluBI	AGCT	8 cut(s)	107, 194, 233, 287, 359, 596, 716, 745
AluI	AGCT	8 cut(s)	107, 194, 233, 287, 359, 596, 716, 745
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	744
AoxI	GGCC	2 cut(s)	137, 632
ApeKI	GCWGC	7 cut(s)	104, 410, 413, 416, 419, 422, 428
ApoI	RAATTY	1 cut(s)	394
Asp700I	GAANNNNTTC	1 cut(s)	89
AspA2I	CCTAGG	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	115
AsuHPI	GGTGA	4 cut(s)	299, 472, 527, 767
AvrII	CCTAGG	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	747
BbsI	GAAGAC	2 cut(s)	105, 492
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	7 cut(s)	116, 397, 400, 403, 406, 409, 415
BccI	CCATC	2 cut(s)	457, 502
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	219
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	4 cut(s)	234, 261, 284, 363
BfmI	CTRYAG	3 cut(s)	288, 687, 711
BfuAI	ACCTGC	1 cut(s)	694
BlnI	CCTAGG	1 cut(s)	362
BmcAI	AGTACT	1 cut(s)	14
BpiI	GAAGAC	2 cut(s)	105, 492
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
Bpu10I	CCTNAGC	1 cut(s)	746
BpuEI	CTTGAG	3 cut(s)	174, 224, 761
Bsa29I	ATCGAT	1 cut(s)	439
BsaBI	GATNNNNATC	1 cut(s)	735
BsaJI	CCNNGG	4 cut(s)	143, 325, 362, 723
BsaXI	ACNNNNNCTCC	6 cut(s)	5, 35, 167, 197, 259, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	735
BseCI	ATCGAT	1 cut(s)	439
BseDI	CCNNGG	4 cut(s)	143, 325, 362, 723
BseGI	GGATG	1 cut(s)	65
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	3 cut(s)	63, 672, 760
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	7 cut(s)	116, 397, 400, 403, 406, 409, 415
BseYI	CCCAGC	1 cut(s)	596
Bsh1236I	CGCG	2 cut(s)	34, 71
Bsh1285I	CGRYCG	2 cut(s)	38, 443
BshFI	GGCC	2 cut(s)	139, 634
BshVI	ATCGAT	1 cut(s)	439
BsiEI	CGRYCG	2 cut(s)	38, 443
BsiHKAI	GWGCWC	1 cut(s)	747
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	139, 634
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	7 cut(s)	35, 292, 436, 440, 517, 736, 771
Bsp19I	CCATGG	2 cut(s)	325, 723
Bsp68I	TCGCGA	1 cut(s)	34
BspACI	CCGC	5 cut(s)	69, 123, 140, 426, 432
BspANI	GGCC	2 cut(s)	139, 634
BspCNI	CTCAG	3 cut(s)	62, 671, 759
BspDI	ATCGAT	1 cut(s)	439
BspFNI	CGCG	2 cut(s)	34, 71
BspHI	TCATGA	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	691
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	1 cut(s)	744
BsrDI	GCAATG	1 cut(s)	251
BssECI	CCNNGG	4 cut(s)	143, 325, 362, 723
BssMI	GATC	7 cut(s)	35, 292, 436, 440, 517, 736, 771
BssT1I	CCWWGG	3 cut(s)	325, 362, 723
Bst4CI	ACNGT	2 cut(s)	553, 571
Bst6I	CTCTTC	3 cut(s)	75, 217, 606
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	619
BstDEI	CTNAG	5 cut(s)	49, 311, 636, 658, 746
BstDSI	CCRYGG	2 cut(s)	325, 723
BstEII	GGTNACC	1 cut(s)	755
BstF5I	GGATG	1 cut(s)	65
BstFNI	CGCG	2 cut(s)	34, 71
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	7 cut(s)	38, 295, 439, 443, 520, 739, 774
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	7 cut(s)	35, 292, 436, 440, 517, 736, 771
BstMCI	CGRYCG	2 cut(s)	38, 443
BstPI	GGTNACC	1 cut(s)	755
BstSFI	CTRYAG	3 cut(s)	288, 687, 711
BstUI	CGCG	2 cut(s)	34, 71
BstV1I	GCAGC	7 cut(s)	116, 397, 400, 403, 406, 409, 415
BstV2I	GAAGAC	2 cut(s)	105, 492
BstX2I	RGATCY	1 cut(s)	736
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	736
Bsu15I	ATCGAT	1 cut(s)	439
BsuRI	GGCC	2 cut(s)	139, 634
BsuTUI	ATCGAT	1 cut(s)	439
BtgI	CCRYGG	2 cut(s)	325, 723
BtgZI	GCGATG	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	558
BtuMI	TCGCGA	1 cut(s)	34
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	1 cut(s)	619
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	439
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	13, 267
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	7 cut(s)	55, 75, 208, 296, 326, 457, 724
CviQI	GTAC	2 cut(s)	13, 267
DdeI	CTNAG	5 cut(s)	49, 311, 636, 658, 746
DpnI	GATC	7 cut(s)	37, 294, 438, 442, 519, 738, 773
DpnII	GATC	7 cut(s)	35, 292, 436, 440, 517, 736, 771
EaeI	YGGCCR	1 cut(s)	137
Eam1104I	CTCTTC	3 cut(s)	75, 217, 606
EarI	CTCTTC	3 cut(s)	75, 217, 606
Ecl136II	GAGCTC	1 cut(s)	745
Eco130I	CCWWGG	3 cut(s)	325, 362, 723
Eco147I	AGGCCT	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	747
Eco53kI	GAGCTC	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	117
Eco91I	GGTNACC	1 cut(s)	755
EcoICRI	GAGCTC	1 cut(s)	745
EcoO65I	GGTNACC	1 cut(s)	755
EcoT14I	CCWWGG	3 cut(s)	325, 362, 723
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	3 cut(s)	325, 362, 723
FaeI	CATG	7 cut(s)	58, 78, 211, 299, 329, 460, 727
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	7 cut(s)	54, 74, 207, 295, 325, 456, 723
FauNDI	CATATG	1 cut(s)	134
FbaI	TGATCA	1 cut(s)	517
FokI	GGATG	1 cut(s)	52
FriOI	GRGCYC	1 cut(s)	747
FspBI	CTAG	4 cut(s)	234, 261, 284, 363
GlaI	GCGC	1 cut(s)	114
GsaI	CCCAGC	1 cut(s)	600
HaeIII	GGCC	2 cut(s)	139, 634
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	7 cut(s)	58, 78, 211, 299, 329, 460, 727
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	1 cut(s)	237
HphI	GGTGA	4 cut(s)	299, 472, 527, 767
Hpy166II	GTNNAC	2 cut(s)	217, 701
Hpy188I	TCNGA	3 cut(s)	445, 478, 683
Hpy188III	TCNNGA	3 cut(s)	33, 55, 740
Hpy8I	GTNNAC	2 cut(s)	217, 701
Hpy99I	CGWCG	3 cut(s)	31, 34, 43
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	2 cut(s)	553, 571
HpyCH4V	TGCA	3 cut(s)	132, 159, 689
HpyF3I	CTNAG	5 cut(s)	49, 311, 636, 658, 746
Hsp92II	CATG	7 cut(s)	58, 78, 211, 299, 329, 460, 727
HspAI	GCGC	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	7 cut(s)	35, 292, 436, 440, 517, 736, 771
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	6 cut(s)	93, 166, 518, 582, 699, 733
Lsp1109I	GCAGC	7 cut(s)	116, 397, 400, 403, 406, 409, 415
MaeI	CTAG	4 cut(s)	234, 261, 284, 363
MaeIII	GTNAC	2 cut(s)	203, 755
MalI	GATC	7 cut(s)	37, 294, 438, 442, 519, 738, 773
MboI	GATC	7 cut(s)	35, 292, 436, 440, 517, 736, 771
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	1 cut(s)	747
MluCI	AATT	2 cut(s)	394, 590
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	706
MnlI	CCTC	9 cut(s)	34, 138, 165, 260, 312, 506, 572, 607, 685
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	3 cut(s)	210, 324, 461
MspA1I	CMGCKG	3 cut(s)	107, 428, 434
MvnI	CGCG	2 cut(s)	34, 71
NcoI	CCATGG	2 cut(s)	325, 723
NdeI	CATATG	1 cut(s)	134
NdeII	GATC	7 cut(s)	35, 292, 436, 440, 517, 736, 771
NlaIII	CATG	7 cut(s)	58, 78, 211, 299, 329, 460, 727
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	2 cut(s)	203, 755
NruI	TCGCGA	1 cut(s)	34
PagI	TCATGA	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	2 cut(s)	35, 38
PdmI	GAANNNNTTC	1 cut(s)	89
Ple19I	CGATCG	2 cut(s)	38, 443
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	747
PspEI	GGTNACC	1 cut(s)	755
PspFI	CCCAGC	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	691
PsuI	RGATCY	1 cut(s)	736
PvuI	CGATCG	2 cut(s)	38, 443
PvuII	CAGCTG	1 cut(s)	107
RruI	TCGCGA	1 cut(s)	34
RsaI	GTAC	2 cut(s)	14, 268
RsaNI	GTAC	2 cut(s)	13, 267
RseI	CAYNNNNRTG	3 cut(s)	210, 324, 461
SacI	GAGCTC	1 cut(s)	747
SaqAI	TTAA	1 cut(s)	564
Sau3AI	GATC	7 cut(s)	35, 292, 436, 440, 517, 736, 771
ScaI	AGTACT	1 cut(s)	14
SchI	GAGTC	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	747
SfcI	CTRYAG	3 cut(s)	288, 687, 711
SmiMI	CAYNNNNRTG	3 cut(s)	210, 324, 461
SmlI	CTYRAG	3 cut(s)	189, 239, 740
SmoI	CTYRAG	3 cut(s)	189, 239, 740
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	2 cut(s)	394, 590
SseBI	AGGCCT	1 cut(s)	634
SsiI	CCGC	5 cut(s)	69, 123, 140, 426, 432
SspMI	CTAG	4 cut(s)	234, 261, 284, 363
SstI	GAGCTC	1 cut(s)	747
StuI	AGGCCT	1 cut(s)	634
StyI	CCWWGG	3 cut(s)	325, 362, 723
TaaI	ACNGT	2 cut(s)	553, 571
TaqI	TCGA	3 cut(s)	41, 439, 537
TasI	AATT	2 cut(s)	394, 590
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	3 cut(s)	142, 428, 434
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	2 cut(s)	203, 755
TseI	GCWGC	7 cut(s)	104, 410, 413, 416, 419, 422, 428
Tsp45I	GTSAC	2 cut(s)	203, 755
TspDTI	ATGAA	3 cut(s)	59, 224, 668
TspRI	CASTG	1 cut(s)	558
XapI	RAATTY	1 cut(s)	394
XcmI	CCANNNNNNNNNTGG	2 cut(s)	260, 730
XmaJI	CCTAGG	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	4 cut(s)	234, 261, 284, 363
ZrmI	AGTACT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.