Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013995

Physical Location & Seq

Genomic Coordinates Reverse (-)

9373835 .. 9374997

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTTGAAGCAGTACTACTCGTCGTCGTCGTCGTCATCGATGAACTCAGTCATGAGTAGCTCATCGGCGACATGGGAAGAGAAGGCTTTCGCTGAAGACGCAGCTGGTTCTCTTGGCGGCGGTGGTTGCATATGGCCGCCGAGGTCTTATTCTTGCAGTTTTTGTATGAGAGAGTTCAGGTCGGCTCAAGCTCTTGGGGGTCACATGAATGTTCACAGAAGAGACAGAGCTAGACTCAAGCAATGTCTTCACAACACTAGTACTGCTAATCCTACACTAGCTACAGATCATCATGTCCCTCATCACCTTAAAAATCATAGCCATAGCTTTATTGCATCTTGTCCTTTTTCAGCTCCTAGGGCTTTTCTCTCTCCATGTTCTTCTTCAAATTGTTGTTCCGCTGCTGCTGCTGCGTCTTGGTCAGATTCGAAACCCGCTGATCTACCGGAAAAGAATGTCATGGTGATGAGATCATCAGAAGAACAAGATCATTCTATTGTAAGCCCGCTGGGTGGTAATCAAGTTGGGGATTATGTCGAAACCGATTTGTCAGTGGGGTTGATTAATACAGTTGTTAGAGGAAACAGACAATTAGCTGGGTCTTGTGGGGAAGAGGCAAGCACTTGTAAAAGGCCTAAGATTGCTTCTGCTATGAACACAGCGCCATTTCCATTCTTTCTCCAATCTGCAGAGGTAACTGGACTTATGCCTGCAGCTAACTCCATGGAAGATTTGGATCTTGAGCTCAGGCTTGGTGACCCAACTCCCAAGGTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

259

Amino Acids

27.78

Weight (kDa)

6.78

Isoelectric Point (pI)

58.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06070
fragaria_vesca	FvH4_7g23040
malus_domestica	MD01G1139000.v1.1 MD07G1203300.v1.1
prunus_persica	Prupe.2G239500_v2.0.a1
pyrus_communis	pycom07g19020
rosa_chinensis	RchiOBHm_Chr1g0368281
rosa_laevigata	RLG00000027224
rosa_multiflora	Rmu_sc0006033.1_g000016 Rmu_sc0009391.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288700
rosa_rugosa	Rorug01G0339900
rosa_samantha	Rh1AG347300 Rh1BG310300 Rh1CG325700 Rh1DG342100
rosa_wichuraiana	Rw1G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	117, 120, 137, 399, 435, 506
AclWI	GGATC	1 cut(s)	744
AcoI	YGGCCR	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	2 cut(s)	14, 262
AfiI	CCNNNNNNNGG	1 cut(s)	512
AgsI	TTSAA	2 cut(s)	7, 387
AhlI	ACTAGT	1 cut(s)	257
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	744
AoxI	GGCC	2 cut(s)	134, 632
ApeKI	GCWGC	6 cut(s)	101, 401, 404, 407, 410, 713
AseI	ATTAAT	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	86
AspA2I	CCTAGG	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	664
AsuHPI	GGTGA	3 cut(s)	296, 475, 767
AsuII	TTCGAA	1 cut(s)	428
AvrII	CCTAGG	1 cut(s)	356
BanII	GRGCYC	1 cut(s)	747
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BbsI	GAAGAC	2 cut(s)	102, 239
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	6 cut(s)	113, 388, 391, 394, 397, 725
BcoDI	GTCTC	1 cut(s)	216
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	4 cut(s)	231, 258, 278, 357
BfmI	CTRYAG	3 cut(s)	282, 687, 711
BfoI	RGCGCY	1 cut(s)	665
BisI	GCNGC	8 cut(s)	102, 118, 137, 402, 405, 408, 411, 714
BlnI	CCTAGG	1 cut(s)	356
BlsI	GCNGC	8 cut(s)	103, 119, 138, 403, 406, 409, 412, 715
BmcAI	AGTACT	2 cut(s)	14, 262
BmsI	GCATC	1 cut(s)	344
BpiI	GAAGAC	2 cut(s)	102, 239
BplI	GAGNNNNNCTC	2 cut(s)	219, 251
Bpu10I	CCTNAGC	1 cut(s)	746
Bpu14I	TTCGAA	1 cut(s)	428
BpuEI	CTTGAG	3 cut(s)	171, 221, 761
Bsa29I	ATCGAT	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	735
BsaJI	CCNNGG	4 cut(s)	140, 356, 723, 768
BsaWI	WCCGGW	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse1I	ACTGG	1 cut(s)	703
Bse3DI	GCAATG	1 cut(s)	248
Bse8I	GATNNNNATC	1 cut(s)	735
BseCI	ATCGAT	1 cut(s)	38
BseDI	CCNNGG	4 cut(s)	140, 356, 723, 768
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMI	GCAATG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	60, 760
BseNI	ACTGG	1 cut(s)	703
BseXI	GCAGC	6 cut(s)	113, 388, 391, 394, 397, 725
BseYI	CCCAGC	2 cut(s)	508, 596
BshFI	GGCC	2 cut(s)	136, 634
BshVI	ATCGAT	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	136, 634
Bsp119I	TTCGAA	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	5 cut(s)	286, 439, 470, 487, 736
Bsp19I	CCATGG	1 cut(s)	723
BspACI	CCGC	6 cut(s)	117, 120, 137, 399, 435, 506
BspANI	GGCC	2 cut(s)	136, 634
BspCNI	CTCAG	2 cut(s)	59, 759
BspDI	ATCGAT	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	51
BspMAI	CTGCAG	2 cut(s)	691, 715
BspPI	GGATC	1 cut(s)	744
BspT104I	TTCGAA	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	703
BssECI	CCNNGG	4 cut(s)	140, 356, 723, 768
BssMI	GATC	5 cut(s)	286, 439, 470, 487, 736
BssT1I	CCWWGG	3 cut(s)	356, 723, 768
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	3 cut(s)	72, 214, 606
BstBI	TTCGAA	1 cut(s)	428
BstC8I	GCNNGC	3 cut(s)	506, 619, 711
BstDEI	CTNAG	3 cut(s)	46, 636, 746
BstDSI	CCRYGG	1 cut(s)	723
BstEII	GGTNACC	1 cut(s)	755
BstH2I	RGCGCY	1 cut(s)	665
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	5 cut(s)	289, 442, 473, 490, 739
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	5 cut(s)	286, 439, 470, 487, 736
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 126, 359, 407, 410
BstPI	GGTNACC	1 cut(s)	755
BstSFI	CTRYAG	3 cut(s)	282, 687, 711
BstV1I	GCAGC	6 cut(s)	113, 388, 391, 394, 397, 725
BstV2I	GAAGAC	2 cut(s)	102, 239
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
Bsu15I	ATCGAT	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	136, 634
BsuTUI	ATCGAT	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	723
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	3 cut(s)	506, 619, 711
CciI	TCATGA	1 cut(s)	51
CfoI	GCGC	1 cut(s)	664
ClaI	ATCGAT	1 cut(s)	38
CseI	GACGC	2 cut(s)	107, 402
Csp6I	GTAC	2 cut(s)	13, 261
CviAII	CATG	7 cut(s)	52, 72, 205, 293, 375, 460, 724
CviQI	GTAC	2 cut(s)	13, 261
DdeI	CTNAG	3 cut(s)	46, 636, 746
DpnI	GATC	5 cut(s)	288, 441, 472, 489, 738
DpnII	GATC	5 cut(s)	286, 439, 470, 487, 736
EaeI	YGGCCR	1 cut(s)	134
Eam1104I	CTCTTC	3 cut(s)	72, 214, 606
EarI	CTCTTC	3 cut(s)	72, 214, 606
Ecl136II	GAGCTC	1 cut(s)	745
Eco130I	CCWWGG	3 cut(s)	356, 723, 768
Eco147I	AGGCCT	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	747
Eco53kI	GAGCTC	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	755
EcoICRI	GAGCTC	1 cut(s)	745
EcoO65I	GGTNACC	1 cut(s)	755
EcoT14I	CCWWGG	3 cut(s)	356, 723, 768
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	3 cut(s)	356, 723, 768
FaeI	CATG	7 cut(s)	55, 75, 208, 296, 378, 463, 727
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	7 cut(s)	51, 71, 204, 292, 374, 459, 723
FauI	CCCGC	2 cut(s)	442, 513
FauNDI	CATATG	1 cut(s)	131
Fnu4HI	GCNGC	8 cut(s)	102, 118, 137, 402, 405, 408, 411, 714
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	8 cut(s)	102, 118, 137, 402, 405, 408, 411, 714
FspBI	CTAG	4 cut(s)	231, 258, 278, 357
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	8 cut(s)	102, 118, 137, 402, 405, 408, 411, 714
GsaI	CCCAGC	2 cut(s)	512, 600
HaeII	RGCGCY	1 cut(s)	665
HaeIII	GGCC	2 cut(s)	136, 634
HapII	CCGG	1 cut(s)	446
HgaI	GACGC	2 cut(s)	107, 402
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	7 cut(s)	55, 75, 208, 296, 378, 463, 727
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HinfI	GANTC	2 cut(s)	234, 425
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	3 cut(s)	296, 475, 767
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	424, 478
Hpy188III	TCNNGA	2 cut(s)	52, 740
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	4 cut(s)	25, 28, 31, 34
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	5 cut(s)	129, 156, 335, 689, 713
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 126, 359, 407, 410
HpyF3I	CTNAG	3 cut(s)	46, 636, 746
Hsp92II	CATG	7 cut(s)	55, 75, 208, 296, 378, 463, 727
HspAI	GCGC	1 cut(s)	662
Kzo9I	GATC	5 cut(s)	286, 439, 470, 487, 736
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	8 cut(s)	90, 163, 459, 494, 582, 684, 723, 733
Lsp1109I	GCAGC	6 cut(s)	113, 388, 391, 394, 397, 725
LweI	GCATC	1 cut(s)	344
MaeI	CTAG	4 cut(s)	231, 258, 278, 357
MaeIII	GTNAC	3 cut(s)	200, 694, 755
MalI	GATC	5 cut(s)	288, 441, 472, 489, 738
MboI	GATC	5 cut(s)	286, 439, 470, 487, 736
MboII	GAAGA	9 cut(s)	89, 107, 231, 239, 372, 375, 491, 623, 740
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	1 cut(s)	747
MluCI	AATT	2 cut(s)	388, 590
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	5 cut(s)	135, 309, 572, 607, 685
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	2 cut(s)	309, 564
MslI	CAYNNNNRTG	2 cut(s)	207, 464
MspA1I	CMGCKG	4 cut(s)	104, 401, 437, 508
MspI	CCGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	5 cut(s)	98, 126, 359, 407, 410
NcoI	CCATGG	1 cut(s)	723
NdeI	CATATG	1 cut(s)	131
NdeII	GATC	5 cut(s)	286, 439, 470, 487, 736
NlaIII	CATG	7 cut(s)	55, 75, 208, 296, 378, 463, 727
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	200, 755
NspV	TTCGAA	1 cut(s)	428
PagI	TCATGA	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	3 cut(s)	26, 29, 35
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	8 cut(s)	103, 119, 138, 403, 406, 409, 412, 715
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PshBI	ATTAAT	1 cut(s)	564
Psp124BI	GAGCTC	1 cut(s)	747
PspEI	GGTNACC	1 cut(s)	755
PspFI	CCCAGC	2 cut(s)	508, 596
PstI	CTGCAG	2 cut(s)	691, 715
PsuI	RGATCY	1 cut(s)	736
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	14, 262
RsaNI	GTAC	2 cut(s)	13, 261
RseI	CAYNNNNRTG	2 cut(s)	207, 464
SacI	GAGCTC	1 cut(s)	747
SaqAI	TTAA	2 cut(s)	309, 564
SatI	GCNGC	8 cut(s)	102, 118, 137, 402, 405, 408, 411, 714
Sau3AI	GATC	5 cut(s)	286, 439, 470, 487, 736
ScaI	AGTACT	2 cut(s)	14, 262
SchI	GAGTC	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	747
SfaNI	GCATC	1 cut(s)	344
SfcI	CTRYAG	3 cut(s)	282, 687, 711
SfuI	TTCGAA	1 cut(s)	428
SmiMI	CAYNNNNRTG	2 cut(s)	207, 464
SmlI	CTYRAG	3 cut(s)	186, 236, 740
SmoI	CTYRAG	3 cut(s)	186, 236, 740
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	2 cut(s)	388, 590
SseBI	AGGCCT	1 cut(s)	634
SsiI	CCGC	6 cut(s)	117, 120, 137, 399, 435, 506
SspMI	CTAG	4 cut(s)	231, 258, 278, 357
SstI	GAGCTC	1 cut(s)	747
StuI	AGGCCT	1 cut(s)	634
StyI	CCWWGG	3 cut(s)	356, 723, 768
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	3 cut(s)	38, 428, 537
TasI	AATT	2 cut(s)	388, 590
TatI	WGTACW	2 cut(s)	12, 260
TauI	GCSGC	2 cut(s)	120, 139
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	309, 564
Tru9I	TTAA	2 cut(s)	309, 564
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	2 cut(s)	200, 755
TseI	GCWGC	6 cut(s)	101, 401, 404, 407, 410, 713
Tsp45I	GTSAC	2 cut(s)	200, 755
TspDTI	ATGAA	3 cut(s)	56, 221, 668
TspRI	CASTG	1 cut(s)	558
VspI	ATTAAT	1 cut(s)	564
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XmaJI	CCTAGG	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	4 cut(s)	231, 258, 278, 357
ZrmI	AGTACT	2 cut(s)	14, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.