Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0013995

Physical Location & Seq

Genomic Coordinates Forward (+)

58929686 .. 58930462

Gene Structure 777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G030910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTTGAATCAGTACTACTCCTCGTCGTCGTCGTCGATGAACTCAGTCATGAGTAGCTCATCGGCGACATGGGAAGAGAAGGCTTTCGCTGAAGACGCGGCCGGTTCGCTTGGCGGCGGTGGTTGCATATGGCCGCCTAGGTCTTATTCTTGCAGTTTTTGTATGAGGGAGTTCAGGTCGGCTCAAGCTCTTGGGGGTCACATGAATGTTCACAGAAGAGACAGAGCTAGACTCAAGCAATGTCTTCACAACACTAGTACTGCTAATCCTACACTAGCTACAGATCATCATGTCCCTCATCACCTTAAAAATCATAGCCATAGCTTTGTTGCATCTTGTCCTTTTTCAGCTCCTAGGGCTTTTCTCTCTCCTTGTTCTTCTTCAAATTGTTGTTCCGCTGCTGCTGCAGCGTCTTGGTCAGATTCGAAACCAGCTAATCTACCGGAAAAGAATGTCATGGTGATGAGGTCATCATCAGAAGAAGATCATTCTATTGTAAGCCTGCAGGGTGGTAATCAAGTTGGGGATTATGTCGAAACCGATTTGTCAGTGGGGTTGATTAATACAGTTGTTAGAGGAAACAGACAATTAGCTGGGTCTTGTGGGGAAGAGGCAAGCACTTGTAAAAGGCCTAAGATTGCTTCTGCTATGAACACAGCACCATTTCCATTCTTTCTCCAATCTGCAGAGGTAACTGGACTTATGGCTGCAGCTAACTCCATGGAAGATTTGGATCTTGAGCTCAGGCTTGGTGACCCAACTCCCAAGGTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

258

Amino Acids

27.62

Weight (kDa)

6.78

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06070
fragaria_vesca	FvH4_7g23040
malus_domestica	MD01G1139000.v1.1 MD07G1203300.v1.1
prunus_persica	Prupe.2G239500_v2.0.a1
pyrus_communis	pycom07g19020
rosa_chinensis	RchiOBHm_Chr1g0368281
rosa_laevigata	RLG00000027224
rosa_multiflora	Rmu_sc0006033.1_g000016 Rmu_sc0009391.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288700
rosa_rugosa	Rorug01G0339900
rosa_samantha	Rh1AG347300 Rh1BG310300 Rh1CG325700 Rh1DG342100
rosa_wichuraiana	Rw1G030910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	98
AciI	CCGC	5 cut(s)	98, 114, 117, 134, 396
AclWI	GGATC	1 cut(s)	741
AcoI	YGGCCR	2 cut(s)	99, 131
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	2 cut(s)	14, 259
AgsI	TTSAA	2 cut(s)	7, 384
AhlI	ACTAGT	1 cut(s)	254
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	741
AoxI	GGCC	3 cut(s)	99, 131, 629
ApeKI	GCWGC	6 cut(s)	398, 401, 404, 407, 707, 710
AseI	ATTAAT	1 cut(s)	561
Asp700I	GAANNNNTTC	1 cut(s)	83
AspA2I	CCTAGG	2 cut(s)	137, 353
AsuHPI	GGTGA	3 cut(s)	293, 472, 764
AsuII	TTCGAA	1 cut(s)	425
AvrII	CCTAGG	2 cut(s)	137, 353
BanII	GRGCYC	1 cut(s)	744
BbsI	GAAGAC	2 cut(s)	99, 236
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	6 cut(s)	385, 388, 391, 419, 694, 722
BcoDI	GTCTC	1 cut(s)	213
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	5 cut(s)	138, 228, 255, 275, 354
BfmI	CTRYAG	5 cut(s)	279, 405, 503, 684, 708
BisI	GCNGC	9 cut(s)	99, 115, 134, 399, 402, 405, 408, 708, 711
BlnI	CCTAGG	2 cut(s)	137, 353
BlsI	GCNGC	9 cut(s)	100, 116, 135, 400, 403, 406, 409, 709, 712
BmcAI	AGTACT	2 cut(s)	14, 259
BmsI	GCATC	1 cut(s)	341
BpiI	GAAGAC	2 cut(s)	99, 236
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
Bpu10I	CCTNAGC	1 cut(s)	743
Bpu14I	TTCGAA	1 cut(s)	425
BpuEI	CTTGAG	3 cut(s)	168, 218, 758
BsaBI	GATNNNNATC	1 cut(s)	732
BsaJI	CCNNGG	4 cut(s)	137, 353, 720, 765
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	700
Bse3DI	GCAATG	1 cut(s)	245
Bse8I	GATNNNNATC	1 cut(s)	732
BseDI	CCNNGG	4 cut(s)	137, 353, 720, 765
BseJI	GATNNNNATC	1 cut(s)	732
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	2 cut(s)	57, 757
BseNI	ACTGG	1 cut(s)	700
BseRI	GAGGAG	1 cut(s)	10
BseX3I	CGGCCG	1 cut(s)	99
BseXI	GCAGC	6 cut(s)	385, 388, 391, 419, 694, 722
BseYI	CCCAGC	1 cut(s)	593
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	3 cut(s)	101, 133, 631
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	744
BsiSI	CCGG	2 cut(s)	102, 443
BslFI	GGGAC	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	101, 133, 631
Bsp119I	TTCGAA	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	744
Bsp143I	GATC	3 cut(s)	283, 484, 733
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	5 cut(s)	98, 114, 117, 134, 396
BspANI	GGCC	3 cut(s)	101, 133, 631
BspCNI	CTCAG	2 cut(s)	56, 756
BspFNI	CGCG	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	48
BspMAI	CTGCAG	4 cut(s)	409, 507, 688, 712
BspPI	GGATC	1 cut(s)	741
BspT104I	TTCGAA	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	700
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	4 cut(s)	137, 353, 720, 765
BssMI	GATC	3 cut(s)	283, 484, 733
BssT1I	CCWWGG	4 cut(s)	137, 353, 720, 765
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	3 cut(s)	69, 211, 603
BstBI	TTCGAA	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	503, 616
BstDEI	CTNAG	3 cut(s)	43, 633, 743
BstDSI	CCRYGG	1 cut(s)	720
BstEII	GGTNACC	1 cut(s)	752
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	3 cut(s)	286, 487, 736
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	3 cut(s)	283, 484, 733
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 123, 356, 404, 407
BstPI	GGTNACC	1 cut(s)	752
BstSFI	CTRYAG	5 cut(s)	279, 405, 503, 684, 708
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	6 cut(s)	385, 388, 391, 419, 694, 722
BstV2I	GAAGAC	2 cut(s)	99, 236
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
BstZI	CGGCCG	1 cut(s)	99
BsuRI	GGCC	3 cut(s)	101, 133, 631
BtgI	CCRYGG	1 cut(s)	720
BtsIMutI	CAGTG	1 cut(s)	555
Cac8I	GCNNGC	2 cut(s)	503, 616
CciI	TCATGA	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	101
CseI	GACGC	2 cut(s)	104, 399
Csp6I	GTAC	2 cut(s)	13, 258
CviAII	CATG	6 cut(s)	49, 69, 202, 290, 457, 721
CviQI	GTAC	2 cut(s)	13, 258
DdeI	CTNAG	3 cut(s)	43, 633, 743
DpnI	GATC	3 cut(s)	285, 486, 735
DpnII	GATC	3 cut(s)	283, 484, 733
EaeI	YGGCCR	2 cut(s)	99, 131
EagI	CGGCCG	1 cut(s)	99
Eam1104I	CTCTTC	3 cut(s)	69, 211, 603
EarI	CTCTTC	3 cut(s)	69, 211, 603
Ecl136II	GAGCTC	1 cut(s)	742
EclXI	CGGCCG	1 cut(s)	99
Eco130I	CCWWGG	4 cut(s)	137, 353, 720, 765
Eco147I	AGGCCT	1 cut(s)	631
Eco24I	GRGCYC	1 cut(s)	744
Eco52I	CGGCCG	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	742
Eco57I	CTGAAG	1 cut(s)	111
Eco91I	GGTNACC	1 cut(s)	752
EcoICRI	GAGCTC	1 cut(s)	742
EcoO65I	GGTNACC	1 cut(s)	752
EcoT14I	CCWWGG	4 cut(s)	137, 353, 720, 765
EcoT38I	GRGCYC	1 cut(s)	744
ErhI	CCWWGG	4 cut(s)	137, 353, 720, 765
FaeI	CATG	6 cut(s)	52, 72, 205, 293, 460, 724
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	6 cut(s)	48, 68, 201, 289, 456, 720
FauNDI	CATATG	1 cut(s)	128
Fnu4HI	GCNGC	9 cut(s)	99, 115, 134, 399, 402, 405, 408, 708, 711
FriOI	GRGCYC	1 cut(s)	744
Fsp4HI	GCNGC	9 cut(s)	99, 115, 134, 399, 402, 405, 408, 708, 711
FspBI	CTAG	5 cut(s)	138, 228, 255, 275, 354
GluI	GCNGC	9 cut(s)	99, 115, 134, 399, 402, 405, 408, 708, 711
GsaI	CCCAGC	1 cut(s)	597
HaeIII	GGCC	3 cut(s)	101, 133, 631
HapII	CCGG	2 cut(s)	102, 443
HgaI	GACGC	2 cut(s)	104, 399
Hin1II	CATG	6 cut(s)	52, 72, 205, 293, 460, 724
HinfI	GANTC	3 cut(s)	7, 231, 422
HpaII	CCGG	2 cut(s)	102, 443
HphI	GGTGA	3 cut(s)	293, 472, 764
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	421, 478
Hpy188III	TCNNGA	2 cut(s)	49, 737
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	4 cut(s)	28, 31, 34, 37
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4V	TGCA	7 cut(s)	126, 153, 332, 407, 505, 686, 710
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 123, 356, 404, 407
HpyF3I	CTNAG	3 cut(s)	43, 633, 743
Hsp92II	CATG	6 cut(s)	52, 72, 205, 293, 460, 724
Kzo9I	GATC	3 cut(s)	283, 484, 733
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	9 cut(s)	115, 160, 444, 456, 491, 515, 579, 681, 730
Lsp1109I	GCAGC	6 cut(s)	385, 388, 391, 419, 694, 722
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	5 cut(s)	138, 228, 255, 275, 354
MaeIII	GTNAC	3 cut(s)	197, 691, 752
MalI	GATC	3 cut(s)	285, 486, 735
MboI	GATC	3 cut(s)	283, 484, 733
MflI	RGATCY	1 cut(s)	733
MhlI	GDGCHC	1 cut(s)	744
MluCI	AATT	2 cut(s)	385, 587
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	7 cut(s)	31, 159, 306, 459, 569, 604, 682
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	2 cut(s)	306, 561
MslI	CAYNNNNRTG	2 cut(s)	204, 461
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	2 cut(s)	102, 443
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	5 cut(s)	95, 123, 356, 404, 407
NcoI	CCATGG	1 cut(s)	720
NdeI	CATATG	1 cut(s)	128
NdeII	GATC	3 cut(s)	283, 484, 733
NlaIII	CATG	6 cut(s)	52, 72, 205, 293, 460, 724
NmuCI	GTSAC	2 cut(s)	197, 752
NspV	TTCGAA	1 cut(s)	425
PagI	TCATGA	1 cut(s)	48
PceI	AGGCCT	1 cut(s)	631
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 32
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	7, 422
PkrI	GCNGC	9 cut(s)	100, 116, 135, 400, 403, 406, 409, 709, 712
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	744
PspEI	GGTNACC	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	593
PstI	CTGCAG	4 cut(s)	409, 507, 688, 712
PsuI	RGATCY	1 cut(s)	733
RsaI	GTAC	2 cut(s)	14, 259
RsaNI	GTAC	2 cut(s)	13, 258
RseI	CAYNNNNRTG	2 cut(s)	204, 461
SacI	GAGCTC	1 cut(s)	744
SaqAI	TTAA	2 cut(s)	306, 561
SatI	GCNGC	9 cut(s)	99, 115, 134, 399, 402, 405, 408, 708, 711
Sau3AI	GATC	3 cut(s)	283, 484, 733
SbfI	CCTGCAGG	1 cut(s)	507
ScaI	AGTACT	2 cut(s)	14, 259
SchI	GAGTC	1 cut(s)	225
SdaI	CCTGCAGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	744
SfaNI	GCATC	1 cut(s)	341
SfcI	CTRYAG	5 cut(s)	279, 405, 503, 684, 708
SfuI	TTCGAA	1 cut(s)	425
SmiMI	CAYNNNNRTG	2 cut(s)	204, 461
SmlI	CTYRAG	3 cut(s)	183, 233, 737
SmoI	CTYRAG	3 cut(s)	183, 233, 737
SpeI	ACTAGT	1 cut(s)	254
Sse8387I	CCTGCAGG	1 cut(s)	507
Sse9I	AATT	2 cut(s)	385, 587
SseBI	AGGCCT	1 cut(s)	631
SsiI	CCGC	5 cut(s)	98, 114, 117, 134, 396
SspMI	CTAG	5 cut(s)	138, 228, 255, 275, 354
SstI	GAGCTC	1 cut(s)	744
StuI	AGGCCT	1 cut(s)	631
StyI	CCWWGG	4 cut(s)	137, 353, 720, 765
TaaI	ACNGT	1 cut(s)	568
TaqI	TCGA	3 cut(s)	35, 425, 534
TasI	AATT	2 cut(s)	385, 587
TatI	WGTACW	2 cut(s)	12, 257
TauI	GCSGC	3 cut(s)	101, 117, 136
TfiI	GAWTC	2 cut(s)	7, 422
Tru1I	TTAA	2 cut(s)	306, 561
Tru9I	TTAA	2 cut(s)	306, 561
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	2 cut(s)	197, 752
TseI	GCWGC	6 cut(s)	398, 401, 404, 407, 707, 710
Tsp45I	GTSAC	2 cut(s)	197, 752
TspDTI	ATGAA	3 cut(s)	53, 218, 665
TspRI	CASTG	1 cut(s)	555
VspI	ATTAAT	1 cut(s)	561
XcmI	CCANNNNNNNNNTGG	1 cut(s)	727
XmaJI	CCTAGG	2 cut(s)	137, 353
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	5 cut(s)	138, 228, 255, 275, 354
ZrmI	AGTACT	2 cut(s)	14, 259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.