AT5G07160
BZIP Family

basic region leucin zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017906
Physical Location & Seq
Reverse (-)
2219971 .. 2220709
739 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07160.1

Sequence Viewer

Length: 453 bp
ATGAGTTTCCCTGTGGTTGCGACATCGTTTGGAGTGTCCCAAAGTGGCAGCCAAGCGGGAAAGAAGAAAGGTGGTTACGTCAACTATGAAGTCGAGCCAGGCTTCACCATTCGTATGCGTCAGAATATTGATCCCACCACGGACCCTAAGATACTCAAACGGATAATTTCGAACCGTGTTGCGGCTCAAAAGTCTAGGTGGAAGAAGGTTCAATATCTTGATGCTCTAGTGAAGAGATCCATGGAGCTCCAAAGAGAGGTGAGTGAGTTGCGTTCCCAACTAGCGATTACCAGTGAACAAAAACGATATCTAGAAAATGAGCAAAGGCAGCTAAAGGAGTGTATCTCTGCTCGGGTTCAACATTGTATCAACAGCGATGGTGTCATTGAGGAGTATAAAACGGAGATAGAGAGGCTGAAGACGAATCTGGCTCCACTCTCCAATCTTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

150

Amino Acids

17.15

Weight (kDa)

9.62

Isoelectric Point (pI)

64.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 47 - 95 2.3e-06 Basic region leucine zipper
bZIP_1 PF00170 50 - 107 2.4e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07160
fragaria_vesca FvH4_3g39200
rosa_laevigata RLG00000036147
rosa_multiflora Rmu_sc0005197.1_g000019
rosa_roxburghii Rroxscaffold_1G00010580
rosa_rugosa Rorug05G0407300
rosa_samantha Rh5AG463100 Rh5BG481000 Rh5CG505200 Rh5DG493100
rosa_wichuraiana Rw5G043090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 56, 182
AclWI GGATC 2 cut(s) 125, 231
AcuI CTGAAG 1 cut(s) 437
AfiI CCNNNNNNNGG 2 cut(s) 181, 256
AgsI TTSAA 2 cut(s) 212, 359
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 2 cut(s) 247, 331
AluI AGCT 2 cut(s) 247, 331
Alw21I GWGCWC 1 cut(s) 249
AlwI GGATC 2 cut(s) 125, 231
Ama87I CYCGRG 1 cut(s) 351
ApeKI GCWGC 2 cut(s) 48, 328
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 2 cut(s) 97, 271
AsuII TTCGAA 1 cut(s) 170
AvaI CYCGRG 1 cut(s) 351
AvaII GGWCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 60, 340
BccI CCATC 1 cut(s) 371
BciT130I CCWGG 1 cut(s) 99
BfaI CTAG 4 cut(s) 195, 227, 281, 311
BisI GCNGC 3 cut(s) 49, 183, 329
BlsI GCNGC 3 cut(s) 50, 184, 330
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 144, 432
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 425
BplI GAGNNNNNCTC 2 cut(s) 329, 361
Bpu14I TTCGAA 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 138, 240
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 256
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 138, 240
BseLI CCNNNNNNNGG 2 cut(s) 181, 256
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 2 cut(s) 60, 340
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 181, 256
BsmFI GGGAC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 351
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 130, 236
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 2 cut(s) 56, 182
BspLI GGNNCC 2 cut(s) 144, 432
BspPI GGATC 2 cut(s) 125, 231
BspT104I TTCGAA 1 cut(s) 170
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 2 cut(s) 138, 240
BssMI GATC 2 cut(s) 130, 236
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 170
BstDEI CTNAG 2 cut(s) 147, 450
BstDSI CCRYGG 2 cut(s) 138, 240
BstKTI GATC 2 cut(s) 133, 239
BstMBI GATC 2 cut(s) 130, 236
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstNI CCWGG 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 60, 340
BstV2I GAAGAC 1 cut(s) 425
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BtgI CCRYGG 2 cut(s) 138, 240
BtgZI GCGATG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 142
CseI GACGC 1 cut(s) 107
CviAII CATG 1 cut(s) 241
CviJI RGCY 8 cut(s) 51, 97, 102, 185, 247, 331, 415, 431
CviKI_1 RGCY 8 cut(s) 51, 97, 102, 185, 247, 331, 415, 431
DdeI CTNAG 2 cut(s) 147, 450
DpnI GATC 2 cut(s) 132, 238
DpnII GATC 2 cut(s) 130, 236
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 437
Eco88I CYCGRG 1 cut(s) 351
EcoICRI GAGCTC 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 97
EcoRV GATATC 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 1 cut(s) 244
FaiI YATR 4 cut(s) 87, 116, 242, 396
FaqI GGGAC 1 cut(s) 22
FatI CATG 1 cut(s) 240
FauI CCCGC 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 49, 183, 329
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 3 cut(s) 49, 183, 329
FspBI CTAG 4 cut(s) 195, 227, 281, 311
GluI GCNGC 3 cut(s) 49, 183, 329
HgaI GACGC 1 cut(s) 107
Hin1II CATG 1 cut(s) 244
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 1 cut(s) 424
HphI GGTGA 2 cut(s) 97, 271
Hpy166II GTNNAC 2 cut(s) 82, 296
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 2 cut(s) 218, 311
Hpy8I GTNNAC 2 cut(s) 82, 296
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
HpyF3I CTNAG 2 cut(s) 147, 450
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 1 cut(s) 244
Kzo9I GATC 2 cut(s) 130, 236
LmnI GCTCC 3 cut(s) 244, 252, 436
LpnPI CCDG 5 cut(s) 24, 84, 111, 304, 413
Lsp1109I GCAGC 2 cut(s) 60, 340
LweI GCATC 1 cut(s) 211
MaeI CTAG 4 cut(s) 195, 227, 281, 311
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 74
MalI GATC 2 cut(s) 132, 238
MboI GATC 2 cut(s) 130, 236
MboII GAAGA 4 cut(s) 76, 214, 244, 430
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 1 cut(s) 165
MnlI CCTC 3 cut(s) 250, 382, 405
MslI CAYNNNNRTG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 328
NcoI CCATGG 1 cut(s) 240
NdeII GATC 2 cut(s) 130, 236
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 2 cut(s) 144, 432
NspV TTCGAA 1 cut(s) 170
PfeI GAWTC 1 cut(s) 424
PkrI GCNGC 3 cut(s) 50, 184, 330
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 144, 432
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 249
SatI GCNGC 3 cut(s) 49, 183, 329
Sau3AI GATC 2 cut(s) 130, 236
Sau96I GGNCC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 249
SetI ASST 7 cut(s) 73, 81, 200, 210, 249, 261, 333
SfaNI GCATC 1 cut(s) 211
SfuI TTCGAA 1 cut(s) 170
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 1 cut(s) 165
SsiI CCGC 2 cut(s) 56, 182
SspI AATATT 1 cut(s) 127
SspMI CTAG 4 cut(s) 195, 227, 281, 311
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 93, 170
TasI AATT 1 cut(s) 165
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 424
TscAI CASTG 1 cut(s) 298
TseI GCWGC 2 cut(s) 48, 328
TspDTI ATGAA 1 cut(s) 102
TspGWI ACGGA 3 cut(s) 155, 175, 416
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 142
XbaI TCTAGA 1 cut(s) 310
XspI CTAG 4 cut(s) 195, 227, 281, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.