Rh5CG505200
BZIP Family

basic region leucin zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017906
Physical Location & Seq
Forward (+)
70186261 .. 70190522
4262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG505200.1

Sequence Viewer

Length: 1101 bp
ATGGAGGCAGACAAGAAGTTTAGTAAAATTAGCCAGCTGGAGACAGTAGCACCCTGGGCAAACAGCCCCTTTTCGATGATGGCTCCATCAACCCTTCCTCTAGCCCCTAGTGCATCTCAGGTGTGGAAACGACCTTACTTGATGAACCATTTTGAAAATGGGGAAGGCAATAGAGGAGCCAAGACTCATTTCCAGCCCTTAGATATCCGCACTAGCACCACTACCCTTATCCCTACTCCTACCACCACCACTAACCCTACCCCTAACGCCACGATCACCACAACCACTACCACCACCCCTACCCCTTCCACCACGACCCCAATCACCACTACCACCCCTGCAGTTGAAGCAATAAAGGATAAGGGCAAGAAACCCCAGAAAGAATCTGGGAGTGATGCTGACCACGGTAATGATAATAAAATTGTTACTGTCAAGACTGAGAAGGAGGAGACAGACGACACTCTGATTGGAGCTCCTCTTCAAATTAGAGTGGGTCGTAACGTAGCTCCTGAGTCACTGGATCCGAGAAAGCTCAAGAGGATCCTTTCAAACCGAGTTTCCGCACAAAAATCTAGATTAAAGAAGCTTCAATATGTTGCCGAAATGGAAAAGAAGGCAAAGGCTCTGGAGGCTCAAGTAGCTCTGCTAAGTCCTCAAGTGGAGTTCTTTAAAAACCAGAATTATTTTCTACAAATGGAGCAACATGCCTTGAACGAATCAATATCTGTTCGCGCAGTTGACAAGTTACATAAAGATGCTCTAATTGAAGCAAACAAAGAAGAGGTGCAGAGATTGAGGCTACTGCAATTGAAGATATTTGAACAGCAGCAAATGCAGGCAAGCATGTTTCTTGATATGGATGGTGTAGGGTCAATGGACCCGAAGATGGTGAACTATCCAGGTTTCACTCAATCTGAGCTGGGAAAGATGTTATGTAGTTCAGACTCAAAAAAAGCACAAAGTGGAGAAAAGACAGCAGCAGAGAATTTGCAGAACCAGATCCGTGAGGCGGCTGAACAAACGCCCGATGTTAAACCAAGCTTGGGAGTGGCTGCGGGAAGAAATAAGGAACTGAGGCTGCACTTCAATAAAACTACATGA

Protein Analysis

366

Amino Acids

40.55

Weight (kDa)

9.22

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 173 - 221 1.3e-07 Basic region leucine zipper
bZIP_1 PF00170 176 - 233 7.2e-10 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017906)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07160
fragaria_vesca FvH4_3g39200
rosa_laevigata RLG00000036147
rosa_multiflora Rmu_sc0005197.1_g000019
rosa_roxburghii Rroxscaffold_1G00010580
rosa_rugosa Rorug05G0407300
rosa_samantha Rh5AG463100 Rh5BG481000 Rh5CG505200 Rh5DG493100
rosa_wichuraiana Rw5G043090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 732
AciI CCGC 4 cut(s) 208, 561, 1010, 1055
AclWI GGATC 5 cut(s) 515, 528, 535, 548, 994
AcsI RAATTY 1 cut(s) 985
AdeI CACNNNGTG 1 cut(s) 962
AfiI CCNNNNNNNGG 3 cut(s) 886, 1009, 1043
AjnI CCWGG 2 cut(s) 53, 898
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 8 cut(s) 37, 473, 506, 532, 586, 641, 919, 1041
AluI AGCT 8 cut(s) 37, 473, 506, 532, 586, 641, 919, 1041
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 2 cut(s) 35, 443
AlwI GGATC 5 cut(s) 515, 528, 535, 548, 994
ApeKI GCWGC 4 cut(s) 826, 977, 1052, 1078
ApoI RAATTY 1 cut(s) 985
AspLEI GCGC 1 cut(s) 734
AspS9I GGNCC 1 cut(s) 877
AsuHPI GGTGA 3 cut(s) 268, 316, 901
AvaII GGWCC 1 cut(s) 877
BamHI GGATCC 2 cut(s) 520, 540
BanII GRGCYC 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 4 cut(s) 838, 989, 1039, 1065
BccI CCATC 4 cut(s) 73, 94, 854, 880
BciT130I CCWGG 2 cut(s) 55, 900
BcoDI GTCTC 2 cut(s) 35, 443
BfaI CTAG 4 cut(s) 101, 108, 213, 573
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 5 cut(s) 827, 978, 1011, 1053, 1079
BlsI GCNGC 5 cut(s) 828, 979, 1012, 1054, 1080
Bme1390I CCNGG 2 cut(s) 55, 900
Bme18I GGWCC 1 cut(s) 877
BmgT120I GGNCC 1 cut(s) 877
BmiI GGNNCC 5 cut(s) 84, 178, 522, 542, 879
BmrFI CCNGG 2 cut(s) 55, 900
BmsI GCATC 3 cut(s) 122, 385, 745
BpmI CTGGAG 2 cut(s) 59, 647
BpuEI CTTGAG 3 cut(s) 518, 618, 639
BsaJI CCNNGG 3 cut(s) 53, 54, 403
Bsc4I CCNNNNNNNGG 3 cut(s) 886, 1009, 1043
Bse1I ACTGG 1 cut(s) 522
BseBI CCWGG 2 cut(s) 55, 900
BseDI CCNNGG 3 cut(s) 53, 54, 403
BseGI GGATG 1 cut(s) 865
BseLI CCNNNNNNNGG 3 cut(s) 886, 1009, 1043
BseMII CTCAG 5 cut(s) 131, 429, 501, 906, 1064
BseNI ACTGG 1 cut(s) 522
BseRI GAGGAG 3 cut(s) 189, 461, 465
BseXI GCAGC 4 cut(s) 838, 989, 1039, 1065
BseYI CCCAGC 1 cut(s) 919
BsgI GTGCAG 2 cut(s) 806, 1064
Bsh1236I CGCG 1 cut(s) 732
BsiHKAI GWGCWC 1 cut(s) 475
BslI CCNNNNNNNGG 3 cut(s) 886, 1009, 1043
BsmAI GTCTC 2 cut(s) 35, 443
Bsp1286I GDGCHC 1 cut(s) 475
Bsp143I GATC 4 cut(s) 273, 520, 540, 999
BspACI CCGC 4 cut(s) 208, 561, 1010, 1055
BspCNI CTCAG 5 cut(s) 130, 430, 502, 907, 1065
BspFNI CGCG 1 cut(s) 732
BspLI GGNNCC 5 cut(s) 84, 178, 522, 542, 879
BspMAI CTGCAG 1 cut(s) 343
BspPI GGATC 5 cut(s) 515, 528, 535, 548, 994
BsrI ACTGG 1 cut(s) 522
BssECI CCNNGG 3 cut(s) 53, 54, 403
BssMI GATC 4 cut(s) 273, 520, 540, 999
Bst2UI CCWGG 2 cut(s) 55, 900
Bst4CI ACNGT 3 cut(s) 46, 407, 430
Bst6I CTCTTC 2 cut(s) 483, 774
BstAPI GCANNNNNTGC 1 cut(s) 832
BstC8I GCNNGC 3 cut(s) 35, 837, 841
BstDEI CTNAG 7 cut(s) 117, 199, 438, 510, 647, 915, 1073
BstDSI CCRYGG 1 cut(s) 403
BstF5I GGATG 1 cut(s) 865
BstFNI CGCG 1 cut(s) 732
BstHHI GCGC 1 cut(s) 734
BstKTI GATC 4 cut(s) 276, 523, 543, 1002
BstMAI GTCTC 2 cut(s) 35, 443
BstMBI GATC 4 cut(s) 273, 520, 540, 999
BstMWI GCNNNNNNNGC 6 cut(s) 56, 110, 347, 629, 638, 832
BstNI CCWGG 2 cut(s) 55, 900
BstNSI RCATGY 2 cut(s) 707, 847
BstSCI CCNGG 2 cut(s) 53, 898
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 4 cut(s) 838, 989, 1039, 1065
BstX2I RGATCY 3 cut(s) 520, 540, 999
BstYI RGATCY 3 cut(s) 520, 540, 999
BtgI CCRYGG 1 cut(s) 403
BtsCI GGATG 1 cut(s) 865
BtsIMutI CAGTG 1 cut(s) 515
Cac8I GCNNGC 3 cut(s) 35, 837, 841
CfoI GCGC 1 cut(s) 734
Cfr13I GGNCC 1 cut(s) 877
CviAII CATG 3 cut(s) 704, 844, 1098
DdeI CTNAG 7 cut(s) 117, 199, 438, 510, 647, 915, 1073
DpnI GATC 4 cut(s) 275, 522, 542, 1001
DpnII GATC 4 cut(s) 273, 520, 540, 999
DraI TTTAAA 1 cut(s) 670
DraIII CACNNNGTG 1 cut(s) 962
Eam1104I CTCTTC 2 cut(s) 483, 774
EarI CTCTTC 2 cut(s) 483, 774
Ecl136II GAGCTC 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 475
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 877
Eco53kI GAGCTC 1 cut(s) 473
EcoICRI GAGCTC 1 cut(s) 473
EcoRII CCWGG 2 cut(s) 53, 898
EcoRV GATATC 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 475
FaeI CATG 3 cut(s) 707, 847, 1101
FaiI YATR 7 cut(s) 594, 705, 750, 845, 857, 934, 1099
FatI CATG 3 cut(s) 703, 843, 1097
FauI CCCGC 1 cut(s) 1048
Fnu4HI GCNGC 5 cut(s) 827, 978, 1011, 1053, 1079
FokI GGATG 1 cut(s) 872
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 5 cut(s) 827, 978, 1011, 1053, 1079
FspBI CTAG 4 cut(s) 101, 108, 213, 573
GlaI GCGC 1 cut(s) 733
GluI GCNGC 5 cut(s) 827, 978, 1011, 1053, 1079
GsaI CCCAGC 1 cut(s) 923
GsuI CTGGAG 2 cut(s) 59, 647
HhaI GCGC 1 cut(s) 734
Hin1II CATG 3 cut(s) 707, 847, 1101
Hin6I GCGC 1 cut(s) 732
HinP1I GCGC 1 cut(s) 732
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 2 cut(s) 584, 1039
HinfI GANTC 5 cut(s) 184, 383, 512, 716, 944
HphI GGTGA 3 cut(s) 268, 316, 901
Hpy166II GTNNAC 2 cut(s) 739, 892
Hpy188I TCNGA 4 cut(s) 465, 525, 916, 943
Hpy188III TCNNGA 6 cut(s) 433, 509, 535, 573, 626, 851
Hpy8I GTNNAC 2 cut(s) 739, 892
HpyAV CCTTC 5 cut(s) 104, 158, 315, 436, 607
HpyCH4III ACNGT 3 cut(s) 46, 407, 430
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 7 cut(s) 113, 341, 787, 805, 835, 991, 1081
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 110, 347, 629, 638, 832
HpyF3I CTNAG 7 cut(s) 117, 199, 438, 510, 647, 915, 1073
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 3 cut(s) 707, 847, 1101
HspAI GCGC 1 cut(s) 732
Kzo9I GATC 4 cut(s) 273, 520, 540, 999
LmnI GCTCC 6 cut(s) 88, 176, 470, 478, 511, 697
Lsp1109I GCAGC 4 cut(s) 838, 989, 1039, 1065
LweI GCATC 3 cut(s) 122, 385, 745
MaeI CTAG 4 cut(s) 101, 108, 213, 573
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 4 cut(s) 424, 497, 513, 744
MalI GATC 4 cut(s) 275, 522, 542, 1001
MboI GATC 4 cut(s) 273, 520, 540, 999
MboII GAAGA 5 cut(s) 470, 791, 823, 895, 1071
MfeI CAATTG 1 cut(s) 806
MflI RGATCY 3 cut(s) 520, 540, 999
MhlI GDGCHC 1 cut(s) 475
MluCI AATT 7 cut(s) 27, 420, 483, 679, 762, 806, 985
MlyI GAGTC 3 cut(s) 178, 521, 938
MseI TTAA 3 cut(s) 578, 669, 1032
MslI CAYNNNNRTG 2 cut(s) 408, 753
MspA1I CMGCKG 1 cut(s) 37
MspR9I CCNGG 2 cut(s) 55, 900
MunI CAATTG 1 cut(s) 806
MvaI CCWGG 2 cut(s) 55, 900
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 6 cut(s) 56, 110, 347, 629, 638, 832
NdeII GATC 4 cut(s) 273, 520, 540, 999
NlaIII CATG 3 cut(s) 707, 847, 1101
NlaIV GGNNCC 5 cut(s) 84, 178, 522, 542, 879
NmuCI GTSAC 1 cut(s) 513
NspI RCATGY 2 cut(s) 707, 847
PasI CCCWGGG 1 cut(s) 54
PfeI GAWTC 2 cut(s) 383, 716
PkrI GCNGC 5 cut(s) 828, 979, 1012, 1054, 1080
PleI GAGTC 3 cut(s) 178, 520, 938
PpsI GAGTC 3 cut(s) 178, 520, 938
Psp124BI GAGCTC 1 cut(s) 475
Psp6I CCWGG 2 cut(s) 53, 898
PspFI CCCAGC 1 cut(s) 919
PspGI CCWGG 2 cut(s) 53, 898
PspN4I GGNNCC 5 cut(s) 84, 178, 522, 542, 879
PspPI GGNCC 1 cut(s) 877
PstI CTGCAG 1 cut(s) 343
PsuI RGATCY 3 cut(s) 520, 540, 999
PvuII CAGCTG 1 cut(s) 37
RseI CAYNNNNRTG 2 cut(s) 408, 753
SacI GAGCTC 1 cut(s) 475
SaqAI TTAA 3 cut(s) 578, 669, 1032
SatI GCNGC 5 cut(s) 827, 978, 1011, 1053, 1079
Sau3AI GATC 4 cut(s) 273, 520, 540, 999
Sau96I GGNCC 1 cut(s) 877
SchI GAGTC 3 cut(s) 178, 521, 938
ScrFI CCNGG 2 cut(s) 55, 900
SduI GDGCHC 1 cut(s) 475
SfaNI GCATC 3 cut(s) 122, 385, 745
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 877
SmiMI CAYNNNNRTG 2 cut(s) 408, 753
SmlI CTYRAG 3 cut(s) 533, 633, 654
SmoI CTYRAG 3 cut(s) 533, 633, 654
Sse9I AATT 7 cut(s) 27, 420, 483, 679, 762, 806, 985
SsiI CCGC 4 cut(s) 208, 561, 1010, 1055
SspMI CTAG 4 cut(s) 101, 108, 213, 573
SstI GAGCTC 1 cut(s) 475
StyD4I CCNGG 2 cut(s) 53, 898
TaaI ACNGT 3 cut(s) 46, 407, 430
TaiI ACGT 1 cut(s) 504
TaqI TCGA 1 cut(s) 74
TasI AATT 7 cut(s) 27, 420, 483, 679, 762, 806, 985
TauI GCSGC 1 cut(s) 1013
TfiI GAWTC 2 cut(s) 383, 716
Tru1I TTAA 3 cut(s) 578, 669, 1032
Tru9I TTAA 3 cut(s) 578, 669, 1032
TscAI CASTG 1 cut(s) 522
TseFI GTSAC 1 cut(s) 513
TseI GCWGC 4 cut(s) 826, 977, 1052, 1078
Tsp45I GTSAC 1 cut(s) 513
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 992
TspRI CASTG 1 cut(s) 522
VpaK11BI GGWCC 1 cut(s) 877
XapI RAATTY 1 cut(s) 985
XbaI TCTAGA 1 cut(s) 572
XceI RCATGY 2 cut(s) 707, 847
XcmI CCANNNNNNNNNTGG 2 cut(s) 155, 383
XspI CTAG 4 cut(s) 101, 108, 213, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.