Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017906

Physical Location & Seq

Genomic Coordinates Forward (+)

76415496 .. 76418071

Gene Structure 2576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036147

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGAGGCAGACAAGAAGTTTAGTAAAATTAGCCAGCTGGAGACAGTAGCACCCTGGGCAAACAGCCCCTTTTCGATGATGGCTCCATCAACCCTTCCTCTTTCCCCTAGTTCATCTCAGGTGTGGAAACGACCTTACTTGATGAACCATTTTGAAAATGGGGAAGGCAATAGAGGAGCCAAGATTCATTTCCAGCCCTTCGATATCCGCACTAGCACCACTACCCTTATCCCTACTCCCACCACCACCACTAACACTACACCTACCGCCACGACCACCACGACCACTACCACCACCCCTACCCCTTCCACCACGACCCCAATCACCACTACCACCCCTGCAGTTGAAGCAATAAAGGATAAGGGCAAGAAACCCCAGGAAGAATCTGGGAGTGATGCTGACCACGGTAATGATAATAAAATTGTTACTGTCAAGACTGAGAAGGAGGAGACAGACGACACTCTGATTGGTGCTCCTCTTCAAATTAGAGTGGGTCGTAACGTAGCTCCTGAGTCACTGGATCCGAGAAAGCTCAAGAGGATCCTTTCAAACCGAGTTTCCGCACAAAAATCTAGATTAAAGAAGCTTCAATATGTTGCCGAAATGGAAAAGAAGGCAAAGGCTCTGGAGGCTCAAGTAGCTCTGCTAAGTCCTCAAGTGGAGTTCTTTAAAAACCAGAATTATTTTCTACAAATGGAGCAACATGCCTTGAACGAATCAATATCTGCTCGCGCAGTTGACAAGTTACATAAAGATGCTCTAATTGAAGCAAACAAAGAAGAGGTGCAGAGATTGAGGCTACTGCAATTGAAGATATTTGAACAGCAGCAAATGCAGGCAAGCATGTTTATTAATATGGATGGTGTAGGGTCAATGGACCTGAAGATGGTGAACCATCCAGGTTTCACTCAATCTGAGCTGGGAAAGATGTTATATAGTTCAGACTCAAAAAAAGCACAAAGTGGAGAAAAGGCAGCAGCAGAGAATTTGCAGAACCAGATCCGTGAGGCGGCTGAACAAACGCCTGATGTGAAACCGAGCTTGGGAGTGGCTGCGGGAGGAAATAAGGAACTGAGGCTGCAATTCAATAAAACTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

367

Amino Acids

40.49

Weight (kDa)

9.08

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	173 - 221	1.3e-07	Basic region leucine zipper
bZIP_1	PF00170	176 - 233	9.8e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07160
fragaria_vesca	FvH4_3g39200
rosa_laevigata	RLG00000036147
rosa_multiflora	Rmu_sc0005197.1_g000019
rosa_roxburghii	Rroxscaffold_1G00010580
rosa_rugosa	Rorug05G0407300
rosa_samantha	Rh5AG463100 Rh5BG481000 Rh5CG505200 Rh5DG493100
rosa_wichuraiana	Rw5G043090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	732
AciI	CCGC	5 cut(s)	208, 267, 561, 1010, 1055
AclWI	GGATC	5 cut(s)	515, 528, 535, 548, 994
AcsI	RAATTY	1 cut(s)	985
AcuI	CTGAAG	1 cut(s)	902
AdeI	CACNNNGTG	1 cut(s)	962
AfiI	CCNNNNNNNGG	3 cut(s)	886, 1009, 1043
AjnI	CCWGG	3 cut(s)	53, 375, 898
AjuI	GAANNNNNNNTTGG	4 cut(s)	173, 205, 1025, 1057
AluBI	AGCT	7 cut(s)	37, 506, 532, 586, 641, 919, 1041
AluI	AGCT	7 cut(s)	37, 506, 532, 586, 641, 919, 1041
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	2 cut(s)	35, 443
AlwI	GGATC	5 cut(s)	515, 528, 535, 548, 994
ApeKI	GCWGC	5 cut(s)	826, 974, 977, 1052, 1078
ApoI	RAATTY	1 cut(s)	985
AseI	ATTAAT	1 cut(s)	852
AspLEI	GCGC	1 cut(s)	734
AspS9I	GGNCC	1 cut(s)	877
AsuHPI	GGTGA	2 cut(s)	316, 901
AvaII	GGWCC	1 cut(s)	877
BamHI	GGATCC	2 cut(s)	520, 540
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	5 cut(s)	838, 986, 989, 1039, 1065
BccI	CCATC	5 cut(s)	73, 94, 854, 880, 903
BciT130I	CCWGG	3 cut(s)	55, 377, 900
BcoDI	GTCTC	2 cut(s)	35, 443
BfaI	CTAG	3 cut(s)	108, 213, 573
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	6 cut(s)	827, 975, 978, 1011, 1053, 1079
BlsI	GCNGC	6 cut(s)	828, 976, 979, 1012, 1054, 1080
Bme1390I	CCNGG	3 cut(s)	55, 377, 900
Bme18I	GGWCC	1 cut(s)	877
BmgT120I	GGNCC	1 cut(s)	877
BmiI	GGNNCC	4 cut(s)	84, 178, 522, 542
BmrFI	CCNGG	3 cut(s)	55, 377, 900
BmsI	GCATC	2 cut(s)	385, 745
BpmI	CTGGAG	2 cut(s)	59, 647
BpuEI	CTTGAG	3 cut(s)	518, 618, 639
BsaJI	CCNNGG	4 cut(s)	53, 54, 375, 403
Bsc4I	CCNNNNNNNGG	3 cut(s)	886, 1009, 1043
Bse1I	ACTGG	1 cut(s)	522
BseBI	CCWGG	3 cut(s)	55, 377, 900
BseDI	CCNNGG	4 cut(s)	53, 54, 375, 403
BseGI	GGATG	2 cut(s)	865, 895
BseLI	CCNNNNNNNGG	3 cut(s)	886, 1009, 1043
BseMII	CTCAG	5 cut(s)	131, 429, 501, 906, 1064
BseNI	ACTGG	1 cut(s)	522
BseRI	GAGGAG	3 cut(s)	189, 461, 465
BseXI	GCAGC	5 cut(s)	838, 986, 989, 1039, 1065
BseYI	CCCAGC	1 cut(s)	919
BsgI	GTGCAG	1 cut(s)	806
Bsh1236I	CGCG	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	475
BslI	CCNNNNNNNGG	3 cut(s)	886, 1009, 1043
BsmAI	GTCTC	2 cut(s)	35, 443
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	3 cut(s)	520, 540, 999
BspACI	CCGC	5 cut(s)	208, 267, 561, 1010, 1055
BspCNI	CTCAG	5 cut(s)	130, 430, 502, 907, 1065
BspFNI	CGCG	1 cut(s)	732
BspLI	GGNNCC	4 cut(s)	84, 178, 522, 542
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	5 cut(s)	515, 528, 535, 548, 994
BsrI	ACTGG	1 cut(s)	522
BssECI	CCNNGG	4 cut(s)	53, 54, 375, 403
BssMI	GATC	3 cut(s)	520, 540, 999
Bst2UI	CCWGG	3 cut(s)	55, 377, 900
Bst4CI	ACNGT	3 cut(s)	46, 407, 430
Bst6I	CTCTTC	2 cut(s)	483, 774
BstAPI	GCANNNNNTGC	1 cut(s)	832
BstC8I	GCNNGC	4 cut(s)	35, 730, 837, 841
BstDEI	CTNAG	6 cut(s)	117, 438, 510, 647, 915, 1073
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	2 cut(s)	865, 895
BstFNI	CGCG	1 cut(s)	732
BstHHI	GCGC	1 cut(s)	734
BstKTI	GATC	3 cut(s)	523, 543, 1002
BstMAI	GTCTC	2 cut(s)	35, 443
BstMBI	GATC	3 cut(s)	520, 540, 999
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 347, 629, 638, 832
BstNI	CCWGG	3 cut(s)	55, 377, 900
BstNSI	RCATGY	2 cut(s)	707, 847
BstSCI	CCNGG	3 cut(s)	53, 375, 898
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	5 cut(s)	838, 986, 989, 1039, 1065
BstX2I	RGATCY	3 cut(s)	520, 540, 999
BstYI	RGATCY	3 cut(s)	520, 540, 999
BtgI	CCRYGG	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	865, 895
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	4 cut(s)	35, 730, 837, 841
CfoI	GCGC	1 cut(s)	734
Cfr13I	GGNCC	1 cut(s)	877
CviAII	CATG	3 cut(s)	704, 844, 1098
DdeI	CTNAG	6 cut(s)	117, 438, 510, 647, 915, 1073
DpnI	GATC	3 cut(s)	522, 542, 1001
DpnII	GATC	3 cut(s)	520, 540, 999
DraI	TTTAAA	1 cut(s)	670
DraIII	CACNNNGTG	1 cut(s)	962
Eam1104I	CTCTTC	2 cut(s)	483, 774
EarI	CTCTTC	2 cut(s)	483, 774
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	877
Eco57I	CTGAAG	1 cut(s)	902
EcoRII	CCWGG	3 cut(s)	53, 375, 898
EcoRV	GATATC	1 cut(s)	205
FaeI	CATG	3 cut(s)	707, 847, 1101
FaiI	YATR	8 cut(s)	594, 705, 750, 845, 857, 934, 936, 1099
FatI	CATG	3 cut(s)	703, 843, 1097
FauI	CCCGC	1 cut(s)	1048
Fnu4HI	GCNGC	6 cut(s)	827, 975, 978, 1011, 1053, 1079
FokI	GGATG	2 cut(s)	872, 882
Fsp4HI	GCNGC	6 cut(s)	827, 975, 978, 1011, 1053, 1079
FspBI	CTAG	3 cut(s)	108, 213, 573
GlaI	GCGC	1 cut(s)	733
GluI	GCNGC	6 cut(s)	827, 975, 978, 1011, 1053, 1079
GsaI	CCCAGC	1 cut(s)	923
GsuI	CTGGAG	2 cut(s)	59, 647
HhaI	GCGC	1 cut(s)	734
Hin1II	CATG	3 cut(s)	707, 847, 1101
Hin6I	GCGC	1 cut(s)	732
HinP1I	GCGC	1 cut(s)	732
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	5 cut(s)	184, 383, 512, 716, 944
HphI	GGTGA	2 cut(s)	316, 901
Hpy166II	GTNNAC	2 cut(s)	739, 892
Hpy188I	TCNGA	4 cut(s)	465, 525, 916, 943
Hpy188III	TCNNGA	5 cut(s)	433, 509, 535, 573, 626
Hpy8I	GTNNAC	2 cut(s)	739, 892
HpyAV	CCTTC	6 cut(s)	104, 158, 208, 315, 436, 607
HpyCH4III	ACNGT	3 cut(s)	46, 407, 430
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	6 cut(s)	341, 787, 805, 835, 991, 1081
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 347, 629, 638, 832
HpyF3I	CTNAG	6 cut(s)	117, 438, 510, 647, 915, 1073
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	3 cut(s)	707, 847, 1101
HspAI	GCGC	1 cut(s)	732
Kzo9I	GATC	3 cut(s)	520, 540, 999
LmnI	GCTCC	5 cut(s)	88, 176, 478, 511, 697
Lsp1109I	GCAGC	5 cut(s)	838, 986, 989, 1039, 1065
LweI	GCATC	2 cut(s)	385, 745
MaeI	CTAG	3 cut(s)	108, 213, 573
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	4 cut(s)	424, 497, 513, 744
MalI	GATC	3 cut(s)	522, 542, 1001
MboI	GATC	3 cut(s)	520, 540, 999
MboII	GAAGA	5 cut(s)	392, 470, 791, 823, 895
MfeI	CAATTG	1 cut(s)	806
MflI	RGATCY	3 cut(s)	520, 540, 999
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	8 cut(s)	27, 420, 483, 679, 762, 806, 985, 1082
MlyI	GAGTC	2 cut(s)	521, 938
MseI	TTAA	3 cut(s)	578, 669, 852
MslI	CAYNNNNRTG	2 cut(s)	408, 753
MspA1I	CMGCKG	1 cut(s)	37
MspR9I	CCNGG	3 cut(s)	55, 377, 900
MunI	CAATTG	1 cut(s)	806
MvaI	CCWGG	3 cut(s)	55, 377, 900
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	5 cut(s)	56, 347, 629, 638, 832
NdeII	GATC	3 cut(s)	520, 540, 999
NlaIII	CATG	3 cut(s)	707, 847, 1101
NlaIV	GGNNCC	4 cut(s)	84, 178, 522, 542
NmuCI	GTSAC	1 cut(s)	513
NspI	RCATGY	2 cut(s)	707, 847
PasI	CCCWGGG	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PfeI	GAWTC	3 cut(s)	184, 383, 716
PkrI	GCNGC	6 cut(s)	828, 976, 979, 1012, 1054, 1080
PleI	GAGTC	2 cut(s)	520, 938
PpsI	GAGTC	2 cut(s)	520, 938
PshBI	ATTAAT	1 cut(s)	852
Psp6I	CCWGG	3 cut(s)	53, 375, 898
PspFI	CCCAGC	1 cut(s)	919
PspGI	CCWGG	3 cut(s)	53, 375, 898
PspN4I	GGNNCC	4 cut(s)	84, 178, 522, 542
PspPI	GGNCC	1 cut(s)	877
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	3 cut(s)	520, 540, 999
PvuII	CAGCTG	1 cut(s)	37
RseI	CAYNNNNRTG	2 cut(s)	408, 753
SaqAI	TTAA	3 cut(s)	578, 669, 852
SatI	GCNGC	6 cut(s)	827, 975, 978, 1011, 1053, 1079
Sau3AI	GATC	3 cut(s)	520, 540, 999
Sau96I	GGNCC	1 cut(s)	877
SchI	GAGTC	2 cut(s)	521, 938
ScrFI	CCNGG	3 cut(s)	55, 377, 900
SduI	GDGCHC	1 cut(s)	475
SfaNI	GCATC	2 cut(s)	385, 745
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	877
SmiMI	CAYNNNNRTG	2 cut(s)	408, 753
SmlI	CTYRAG	3 cut(s)	533, 633, 654
SmoI	CTYRAG	3 cut(s)	533, 633, 654
Sse9I	AATT	8 cut(s)	27, 420, 483, 679, 762, 806, 985, 1082
SsiI	CCGC	5 cut(s)	208, 267, 561, 1010, 1055
SspMI	CTAG	3 cut(s)	108, 213, 573
StyD4I	CCNGG	3 cut(s)	53, 375, 898
TaaI	ACNGT	3 cut(s)	46, 407, 430
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	2 cut(s)	74, 201
TasI	AATT	8 cut(s)	27, 420, 483, 679, 762, 806, 985, 1082
TauI	GCSGC	1 cut(s)	1013
TfiI	GAWTC	3 cut(s)	184, 383, 716
Tru1I	TTAA	3 cut(s)	578, 669, 852
Tru9I	TTAA	3 cut(s)	578, 669, 852
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	5 cut(s)	826, 974, 977, 1052, 1078
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	3 cut(s)	102, 158, 176
TspGWI	ACGGA	1 cut(s)	992
TspRI	CASTG	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	877
VspI	ATTAAT	1 cut(s)	852
XapI	RAATTY	1 cut(s)	985
XbaI	TCTAGA	1 cut(s)	572
XceI	RCATGY	2 cut(s)	707, 847
XcmI	CCANNNNNNNNNTGG	2 cut(s)	155, 383
XspI	CTAG	3 cut(s)	108, 213, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.