Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0017906

Physical Location & Seq

Genomic Coordinates Forward (+)

75374728 .. 75377832

Gene Structure 3105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G043090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAGGCAGACAAGAAGTTTAGTACAATTAGCCAGCTGGAGACAGTAGCACCCTGGGCAAACAGCCCCTTTTCGATGATGGCTCCATCAACCCTTCCTCTAGCCCCTAGTGCATCTCAGGTGTGGAAACGACCTTATTACTTGATGAACCATTTTGAAAATGGGGAAGGCAATAGAGGAGCCAAGACTCATTTCCAGCCCTTAGATATCCGCACTAGCACCACTACCCTTATCCCTACTCCTACCACCACCACTAACCCTACCCCTACCGCCACGATCACCACAACCACTACCATCATCCCTACCCCTTCCACCACGACCCCAATCACCACTACCACCCCTGCAGTTGAAGCAATAAAGGATAAGGGCAAGAAACCCCAGAAAGAATCTGGGAGTGATGCTGACCACGGTAATGATAATCAAATTGTTACTGTCAAGACTGAGAAGGAGGAGACAGACGACACTCTGATTGGAGCTCCTCTTCAAATTAGAGTGGGTCGTAACGTAGCTCCTGAGTCACTGGATCCGAGAAAGCTCAAGAGGATCCTTTCAAACCGAGTTTCCGCACAAAAATCTAGATTAAAGAAGCTTCAATATGTTGCCGAAATGGAAAAGAAGGCAAAGGCTCTGGAGGCTCAAGTAGCTCTGCTAAGTCCTCAAGTGGAGTTCTATAAAAACCAGAATTATTTTCTACAAATGGAGCAACATGCCTTGAACGAATCAATATCTGTTCGCGCAGTTGACAAGTTACATAAAGATGCTCTAATTGAAGCAAACAAAGAAGAGGTGCAGAGATTGAGGCTACTGCAATTGAAGATATTTGAACAGCAGCAAATGCAGGCAAGCATGTTTATTAATATGGATGGTGTAGGGTCAATGGACCCGAAGATGGTGAACTATCCAGGTTTCACTCAATCTGAGCTGGGAAAGATGTTATGTAGTTCAGACTCAAAAAAAGCACAAAGTGGAGAAAAGACAGCAGCAGAGAATTTGCAGAACCAGATCCGTGAGGCGGCTGAACAAACGCCCGATGTTAAACCAAGCTTGGGAGTGGCTGCGGGAAGAAATAAGGAACTGAGGCTGCACTTCAATAAAACTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

367

Amino Acids

40.71

Weight (kDa)

9.12

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	174 - 226	5.3e-08	Basic region leucine zipper
bZIP_1	PF00170	177 - 234	2.6e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07160
fragaria_vesca	FvH4_3g39200
rosa_laevigata	RLG00000036147
rosa_multiflora	Rmu_sc0005197.1_g000019
rosa_roxburghii	Rroxscaffold_1G00010580
rosa_rugosa	Rorug05G0407300
rosa_samantha	Rh5AG463100 Rh5BG481000 Rh5CG505200 Rh5DG493100
rosa_wichuraiana	Rw5G043090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	735
AciI	CCGC	5 cut(s)	211, 270, 564, 1013, 1058
AclWI	GGATC	5 cut(s)	518, 531, 538, 551, 997
AcsI	RAATTY	1 cut(s)	988
AdeI	CACNNNGTG	1 cut(s)	965
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	3 cut(s)	889, 1012, 1046
AjnI	CCWGG	2 cut(s)	53, 901
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	8 cut(s)	37, 476, 509, 535, 589, 644, 922, 1044
AluI	AGCT	8 cut(s)	37, 476, 509, 535, 589, 644, 922, 1044
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	2 cut(s)	35, 446
AlwI	GGATC	5 cut(s)	518, 531, 538, 551, 997
ApeKI	GCWGC	4 cut(s)	829, 980, 1055, 1081
ApoI	RAATTY	1 cut(s)	988
AseI	ATTAAT	1 cut(s)	855
AspLEI	GCGC	1 cut(s)	737
AspS9I	GGNCC	1 cut(s)	880
AsuHPI	GGTGA	3 cut(s)	271, 319, 904
AvaII	GGWCC	1 cut(s)	880
BamHI	GGATCC	2 cut(s)	523, 543
BanII	GRGCYC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	478
BbvI	GCAGC	4 cut(s)	841, 992, 1042, 1068
BccI	CCATC	5 cut(s)	73, 94, 302, 857, 883
BciT130I	CCWGG	2 cut(s)	55, 903
BcoDI	GTCTC	2 cut(s)	35, 446
BfaI	CTAG	4 cut(s)	101, 108, 216, 576
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	5 cut(s)	830, 981, 1014, 1056, 1082
BlsI	GCNGC	5 cut(s)	831, 982, 1015, 1057, 1083
Bme1390I	CCNGG	2 cut(s)	55, 903
Bme18I	GGWCC	1 cut(s)	880
BmgT120I	GGNCC	1 cut(s)	880
BmiI	GGNNCC	5 cut(s)	84, 181, 525, 545, 882
BmrFI	CCNGG	2 cut(s)	55, 903
BmsI	GCATC	3 cut(s)	122, 388, 748
BpmI	CTGGAG	2 cut(s)	59, 650
BpuEI	CTTGAG	3 cut(s)	521, 621, 642
BsaJI	CCNNGG	3 cut(s)	53, 54, 406
Bsc4I	CCNNNNNNNGG	3 cut(s)	889, 1012, 1046
Bse1I	ACTGG	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	55, 903
BseDI	CCNNGG	3 cut(s)	53, 54, 406
BseGI	GGATG	2 cut(s)	297, 868
BseLI	CCNNNNNNNGG	3 cut(s)	889, 1012, 1046
BseMII	CTCAG	5 cut(s)	131, 432, 504, 909, 1067
BseNI	ACTGG	1 cut(s)	525
BseRI	GAGGAG	3 cut(s)	192, 464, 468
BseXI	GCAGC	4 cut(s)	841, 992, 1042, 1068
BseYI	CCCAGC	1 cut(s)	922
BsgI	GTGCAG	2 cut(s)	809, 1067
Bsh1236I	CGCG	1 cut(s)	735
BsiHKAI	GWGCWC	1 cut(s)	478
BslI	CCNNNNNNNGG	3 cut(s)	889, 1012, 1046
BsmAI	GTCTC	2 cut(s)	35, 446
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	4 cut(s)	276, 523, 543, 1002
BspACI	CCGC	5 cut(s)	211, 270, 564, 1013, 1058
BspCNI	CTCAG	5 cut(s)	130, 433, 505, 910, 1068
BspFNI	CGCG	1 cut(s)	735
BspLI	GGNNCC	5 cut(s)	84, 181, 525, 545, 882
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	5 cut(s)	518, 531, 538, 551, 997
BsrI	ACTGG	1 cut(s)	525
BssECI	CCNNGG	3 cut(s)	53, 54, 406
BssMI	GATC	4 cut(s)	276, 523, 543, 1002
Bst2UI	CCWGG	2 cut(s)	55, 903
Bst4CI	ACNGT	3 cut(s)	46, 410, 433
Bst6I	CTCTTC	2 cut(s)	486, 777
BstAPI	GCANNNNNTGC	1 cut(s)	835
BstC8I	GCNNGC	3 cut(s)	35, 840, 844
BstDEI	CTNAG	7 cut(s)	117, 202, 441, 513, 650, 918, 1076
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	297, 868
BstFNI	CGCG	1 cut(s)	735
BstHHI	GCGC	1 cut(s)	737
BstKTI	GATC	4 cut(s)	279, 526, 546, 1005
BstMAI	GTCTC	2 cut(s)	35, 446
BstMBI	GATC	4 cut(s)	276, 523, 543, 1002
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 110, 350, 632, 641, 835
BstNI	CCWGG	2 cut(s)	55, 903
BstNSI	RCATGY	2 cut(s)	710, 850
BstSCI	CCNGG	2 cut(s)	53, 901
BstSFI	CTRYAG	1 cut(s)	342
BstUI	CGCG	1 cut(s)	735
BstV1I	GCAGC	4 cut(s)	841, 992, 1042, 1068
BstX2I	RGATCY	3 cut(s)	523, 543, 1002
BstYI	RGATCY	3 cut(s)	523, 543, 1002
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	297, 868
BtsIMutI	CAGTG	1 cut(s)	518
Cac8I	GCNNGC	3 cut(s)	35, 840, 844
CfoI	GCGC	1 cut(s)	737
Cfr13I	GGNCC	1 cut(s)	880
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	3 cut(s)	707, 847, 1101
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	7 cut(s)	117, 202, 441, 513, 650, 918, 1076
DpnI	GATC	4 cut(s)	278, 525, 545, 1004
DpnII	GATC	4 cut(s)	276, 523, 543, 1002
DraIII	CACNNNGTG	1 cut(s)	965
Eam1104I	CTCTTC	2 cut(s)	486, 777
EarI	CTCTTC	2 cut(s)	486, 777
Ecl136II	GAGCTC	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	478
Eco32I	GATATC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	880
Eco53kI	GAGCTC	1 cut(s)	476
EcoICRI	GAGCTC	1 cut(s)	476
EcoRII	CCWGG	2 cut(s)	53, 901
EcoRV	GATATC	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	478
FaeI	CATG	3 cut(s)	710, 850, 1104
FaiI	YATR	8 cut(s)	597, 672, 708, 753, 848, 860, 937, 1102
FatI	CATG	3 cut(s)	706, 846, 1100
FauI	CCCGC	1 cut(s)	1051
Fnu4HI	GCNGC	5 cut(s)	830, 981, 1014, 1056, 1082
FokI	GGATG	2 cut(s)	284, 875
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	5 cut(s)	830, 981, 1014, 1056, 1082
FspBI	CTAG	4 cut(s)	101, 108, 216, 576
GlaI	GCGC	1 cut(s)	736
GluI	GCNGC	5 cut(s)	830, 981, 1014, 1056, 1082
GsaI	CCCAGC	1 cut(s)	926
GsuI	CTGGAG	2 cut(s)	59, 650
HhaI	GCGC	1 cut(s)	737
Hin1II	CATG	3 cut(s)	710, 850, 1104
Hin6I	GCGC	1 cut(s)	735
HinP1I	GCGC	1 cut(s)	735
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HindIII	AAGCTT	2 cut(s)	587, 1042
HinfI	GANTC	5 cut(s)	187, 386, 515, 719, 947
HphI	GGTGA	3 cut(s)	271, 319, 904
Hpy166II	GTNNAC	2 cut(s)	742, 895
Hpy188I	TCNGA	4 cut(s)	468, 528, 919, 946
Hpy188III	TCNNGA	5 cut(s)	436, 512, 538, 576, 629
Hpy8I	GTNNAC	2 cut(s)	742, 895
HpyAV	CCTTC	5 cut(s)	104, 161, 318, 439, 610
HpyCH4III	ACNGT	3 cut(s)	46, 410, 433
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	7 cut(s)	113, 344, 790, 808, 838, 994, 1084
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 110, 350, 632, 641, 835
HpyF3I	CTNAG	7 cut(s)	117, 202, 441, 513, 650, 918, 1076
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	3 cut(s)	710, 850, 1104
HspAI	GCGC	1 cut(s)	735
Kzo9I	GATC	4 cut(s)	276, 523, 543, 1002
LmnI	GCTCC	6 cut(s)	88, 179, 473, 481, 514, 700
Lsp1109I	GCAGC	4 cut(s)	841, 992, 1042, 1068
LweI	GCATC	3 cut(s)	122, 388, 748
MaeI	CTAG	4 cut(s)	101, 108, 216, 576
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	4 cut(s)	427, 500, 516, 747
MalI	GATC	4 cut(s)	278, 525, 545, 1004
MboI	GATC	4 cut(s)	276, 523, 543, 1002
MboII	GAAGA	5 cut(s)	473, 794, 826, 898, 1074
MfeI	CAATTG	1 cut(s)	809
MflI	RGATCY	3 cut(s)	523, 543, 1002
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	7 cut(s)	27, 423, 486, 682, 765, 809, 988
MlyI	GAGTC	3 cut(s)	181, 524, 941
MseI	TTAA	3 cut(s)	581, 855, 1035
MslI	CAYNNNNRTG	2 cut(s)	411, 756
MspA1I	CMGCKG	1 cut(s)	37
MspR9I	CCNGG	2 cut(s)	55, 903
MunI	CAATTG	1 cut(s)	809
MvaI	CCWGG	2 cut(s)	55, 903
MvnI	CGCG	1 cut(s)	735
MwoI	GCNNNNNNNGC	6 cut(s)	56, 110, 350, 632, 641, 835
NdeII	GATC	4 cut(s)	276, 523, 543, 1002
NlaIII	CATG	3 cut(s)	710, 850, 1104
NlaIV	GGNNCC	5 cut(s)	84, 181, 525, 545, 882
NmuCI	GTSAC	1 cut(s)	516
NspI	RCATGY	2 cut(s)	710, 850
PasI	CCCWGGG	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	386, 719
PkrI	GCNGC	5 cut(s)	831, 982, 1015, 1057, 1083
PleI	GAGTC	3 cut(s)	181, 523, 941
PpsI	GAGTC	3 cut(s)	181, 523, 941
PshBI	ATTAAT	1 cut(s)	855
Psp124BI	GAGCTC	1 cut(s)	478
Psp6I	CCWGG	2 cut(s)	53, 901
PspFI	CCCAGC	1 cut(s)	922
PspGI	CCWGG	2 cut(s)	53, 901
PspN4I	GGNNCC	5 cut(s)	84, 181, 525, 545, 882
PspPI	GGNCC	1 cut(s)	880
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	3 cut(s)	523, 543, 1002
PvuII	CAGCTG	1 cut(s)	37
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	2 cut(s)	411, 756
SacI	GAGCTC	1 cut(s)	478
SaqAI	TTAA	3 cut(s)	581, 855, 1035
SatI	GCNGC	5 cut(s)	830, 981, 1014, 1056, 1082
Sau3AI	GATC	4 cut(s)	276, 523, 543, 1002
Sau96I	GGNCC	1 cut(s)	880
SchI	GAGTC	3 cut(s)	181, 524, 941
ScrFI	CCNGG	2 cut(s)	55, 903
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	3 cut(s)	122, 388, 748
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	880
SmiMI	CAYNNNNRTG	2 cut(s)	411, 756
SmlI	CTYRAG	3 cut(s)	536, 636, 657
SmoI	CTYRAG	3 cut(s)	536, 636, 657
Sse9I	AATT	7 cut(s)	27, 423, 486, 682, 765, 809, 988
SsiI	CCGC	5 cut(s)	211, 270, 564, 1013, 1058
SspMI	CTAG	4 cut(s)	101, 108, 216, 576
SstI	GAGCTC	1 cut(s)	478
StyD4I	CCNGG	2 cut(s)	53, 901
TaaI	ACNGT	3 cut(s)	46, 410, 433
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	74
TasI	AATT	7 cut(s)	27, 423, 486, 682, 765, 809, 988
TatI	WGTACW	1 cut(s)	23
TauI	GCSGC	1 cut(s)	1016
TfiI	GAWTC	2 cut(s)	386, 719
Tru1I	TTAA	3 cut(s)	581, 855, 1035
Tru9I	TTAA	3 cut(s)	581, 855, 1035
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	4 cut(s)	829, 980, 1055, 1081
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	995
TspRI	CASTG	1 cut(s)	525
VpaK11BI	GGWCC	1 cut(s)	880
VspI	ATTAAT	1 cut(s)	855
XapI	RAATTY	1 cut(s)	988
XbaI	TCTAGA	1 cut(s)	575
XceI	RCATGY	2 cut(s)	710, 850
XcmI	CCANNNNNNNNNTGG	2 cut(s)	158, 386
XspI	CTAG	4 cut(s)	101, 108, 216, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.