Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005197.1

Orthogroup ID

OG0017906

Physical Location & Seq

Genomic Coordinates Reverse (-)

70143 .. 74197

Gene Structure 4055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005197.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atggaggcagacaagaagtttagtaaaattagccagctggagacagtagcaccctgggcaaacagccccttttcgatgatggctccatcaacccttcctctagcccctagtgcatctcaggtgtggaaacgaccttacttgatgaaccattttgaaaatggggaaggcaatagaggagccaagactcatttccagcccttagatatccgcactagcaccactacccttatccctactcctactaccaccactaaccctacccctaacgccacgatcaccacaaccactatcaccacccctaccccttccaccacgaccccaatcaccactaccacccctgcagttgaagcaataaaggataagggcaagaaaccccagaaagaatctgggagtgatgctgaccacggtaatgataataaaattgttactgtcaagactgagaaggaggagacagacgacactctgattggagctcctcttcaaattagagtgggtcgtaacgtagctcctgagtcactggatccgagaaagctcaagaggatcctttcaaaccgagtttccgcacaaaaatctagattaaagaagcttcaatatgttgccgaaatggaaaagaaggcaaaggctctggaggctcaagtagctctgctaagtcctcaagtggagttctttaaaaaccagaattattttctacaaatggagcaacatgccttgaacgaatcaatatctgttcgcgcagttgacaagttacataaagatgcaaacaaagaagaggtgcagagattgaggctactgcaattgaagatatttgaacagcagcaaatgcaggcaagtatgtttattgatatggatggtgtagggtcaatggacccgaagatggtgaactatccaggtttcactcaatctgagctgggaaagatgttatgtagttcagactcaaaaaaagcacaaagtggagaaaagacagcagcagagaatttgcagaaccagatccgtgaggcggctgaacaaacgcccgatgttaaaccaagcttgggagtggctgcgggaagaaataaggaactgaggctgcacttcaataaaactacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

362

Amino Acids

40.13

Weight (kDa)

9.3

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07160
fragaria_vesca	FvH4_3g39200
rosa_laevigata	RLG00000036147
rosa_multiflora	Rmu_sc0005197.1_g000019
rosa_roxburghii	Rroxscaffold_1G00010580
rosa_rugosa	Rorug05G0407300
rosa_samantha	Rh5AG463100 Rh5BG481000 Rh5CG505200 Rh5DG493100
rosa_wichuraiana	Rw5G043090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	732
AciI	CCGC	4 cut(s)	208, 561, 998, 1043
AclWI	GGATC	5 cut(s)	515, 528, 535, 548, 982
AcsI	RAATTY	1 cut(s)	973
AdeI	CACNNNGTG	1 cut(s)	950
AfiI	CCNNNNNNNGG	3 cut(s)	874, 997, 1031
AgsI	TTSAA	9 cut(s)	155, 347, 482, 549, 590, 712, 799, 809, 1075
AjnI	CCWGG	2 cut(s)	53, 886
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	8 cut(s)	37, 473, 506, 532, 586, 641, 907, 1029
AluI	AGCT	8 cut(s)	37, 473, 506, 532, 586, 641, 907, 1029
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	2 cut(s)	35, 443
AlwI	GGATC	5 cut(s)	515, 528, 535, 548, 982
ApeKI	GCWGC	4 cut(s)	814, 965, 1040, 1066
ApoI	RAATTY	1 cut(s)	973
AspLEI	GCGC	1 cut(s)	734
AspS9I	GGNCC	1 cut(s)	865
AsuHPI	GGTGA	4 cut(s)	268, 283, 316, 889
AvaII	GGWCC	1 cut(s)	865
BamHI	GGATCC	2 cut(s)	520, 540
BanII	GRGCYC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	4 cut(s)	826, 977, 1027, 1053
BccI	CCATC	4 cut(s)	73, 94, 842, 868
BciT130I	CCWGG	2 cut(s)	55, 888
BcoDI	GTCTC	2 cut(s)	35, 443
BfaI	CTAG	4 cut(s)	101, 108, 213, 573
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	5 cut(s)	815, 966, 999, 1041, 1067
BlsI	GCNGC	5 cut(s)	816, 967, 1000, 1042, 1068
Bme1390I	CCNGG	2 cut(s)	55, 888
Bme18I	GGWCC	1 cut(s)	865
BmgT120I	GGNCC	1 cut(s)	865
BmiI	GGNNCC	5 cut(s)	84, 178, 522, 542, 867
BmrFI	CCNGG	2 cut(s)	55, 888
BmsI	GCATC	3 cut(s)	122, 385, 745
BpmI	CTGGAG	2 cut(s)	59, 647
BpuEI	CTTGAG	3 cut(s)	518, 618, 639
BsaJI	CCNNGG	3 cut(s)	53, 54, 403
Bsc4I	CCNNNNNNNGG	3 cut(s)	874, 997, 1031
Bse1I	ACTGG	1 cut(s)	522
BseBI	CCWGG	2 cut(s)	55, 888
BseDI	CCNNGG	3 cut(s)	53, 54, 403
BseGI	GGATG	1 cut(s)	853
BseLI	CCNNNNNNNGG	3 cut(s)	874, 997, 1031
BseMII	CTCAG	5 cut(s)	131, 429, 501, 894, 1052
BseNI	ACTGG	1 cut(s)	522
BseRI	GAGGAG	3 cut(s)	189, 461, 465
BseXI	GCAGC	4 cut(s)	826, 977, 1027, 1053
BseYI	CCCAGC	1 cut(s)	907
BsgI	GTGCAG	2 cut(s)	794, 1052
Bsh1236I	CGCG	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	475
BslI	CCNNNNNNNGG	3 cut(s)	874, 997, 1031
BsmAI	GTCTC	2 cut(s)	35, 443
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	4 cut(s)	273, 520, 540, 987
BspACI	CCGC	4 cut(s)	208, 561, 998, 1043
BspCNI	CTCAG	5 cut(s)	130, 430, 502, 895, 1053
BspFNI	CGCG	1 cut(s)	732
BspLI	GGNNCC	5 cut(s)	84, 178, 522, 542, 867
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	5 cut(s)	515, 528, 535, 548, 982
BsrI	ACTGG	1 cut(s)	522
BssECI	CCNNGG	3 cut(s)	53, 54, 403
BssMI	GATC	4 cut(s)	273, 520, 540, 987
Bst2UI	CCWGG	2 cut(s)	55, 888
Bst4CI	ACNGT	3 cut(s)	46, 407, 430
Bst6I	CTCTTC	2 cut(s)	483, 762
BstAPI	GCANNNNNTGC	1 cut(s)	820
BstC8I	GCNNGC	2 cut(s)	35, 825
BstDEI	CTNAG	7 cut(s)	117, 199, 438, 510, 647, 903, 1061
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	853
BstFNI	CGCG	1 cut(s)	732
BstHHI	GCGC	1 cut(s)	734
BstKTI	GATC	4 cut(s)	276, 523, 543, 990
BstMAI	GTCTC	2 cut(s)	35, 443
BstMBI	GATC	4 cut(s)	273, 520, 540, 987
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 110, 347, 629, 638, 820
BstNI	CCWGG	2 cut(s)	55, 888
BstNSI	RCATGY	1 cut(s)	707
BstSCI	CCNGG	2 cut(s)	53, 886
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	4 cut(s)	826, 977, 1027, 1053
BstX2I	RGATCY	3 cut(s)	520, 540, 987
BstYI	RGATCY	3 cut(s)	520, 540, 987
BtgI	CCRYGG	1 cut(s)	403
BtsCI	GGATG	1 cut(s)	853
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	35, 825
CfoI	GCGC	1 cut(s)	734
Cfr13I	GGNCC	1 cut(s)	865
CviAII	CATG	2 cut(s)	704, 1086
DdeI	CTNAG	7 cut(s)	117, 199, 438, 510, 647, 903, 1061
DpnI	GATC	4 cut(s)	275, 522, 542, 989
DpnII	GATC	4 cut(s)	273, 520, 540, 987
DraI	TTTAAA	1 cut(s)	670
DraIII	CACNNNGTG	1 cut(s)	950
Eam1104I	CTCTTC	2 cut(s)	483, 762
EarI	CTCTTC	2 cut(s)	483, 762
Ecl136II	GAGCTC	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	475
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	865
Eco53kI	GAGCTC	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	473
EcoRII	CCWGG	2 cut(s)	53, 886
EcoRV	GATATC	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	475
FaeI	CATG	2 cut(s)	707, 1089
FaiI	YATR	7 cut(s)	594, 705, 750, 833, 845, 922, 1087
FatI	CATG	2 cut(s)	703, 1085
FauI	CCCGC	1 cut(s)	1036
Fnu4HI	GCNGC	5 cut(s)	815, 966, 999, 1041, 1067
FokI	GGATG	1 cut(s)	860
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	5 cut(s)	815, 966, 999, 1041, 1067
FspBI	CTAG	4 cut(s)	101, 108, 213, 573
GlaI	GCGC	1 cut(s)	733
GluI	GCNGC	5 cut(s)	815, 966, 999, 1041, 1067
GsaI	CCCAGC	1 cut(s)	911
GsuI	CTGGAG	2 cut(s)	59, 647
HhaI	GCGC	1 cut(s)	734
Hin1II	CATG	2 cut(s)	707, 1089
Hin6I	GCGC	1 cut(s)	732
HinP1I	GCGC	1 cut(s)	732
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	2 cut(s)	584, 1027
HinfI	GANTC	5 cut(s)	184, 383, 512, 716, 932
HphI	GGTGA	4 cut(s)	268, 283, 316, 889
Hpy166II	GTNNAC	2 cut(s)	739, 880
Hpy188I	TCNGA	4 cut(s)	465, 525, 904, 931
Hpy188III	TCNNGA	5 cut(s)	433, 509, 535, 573, 626
Hpy8I	GTNNAC	2 cut(s)	739, 880
HpyAV	CCTTC	5 cut(s)	104, 158, 315, 436, 607
HpyCH4III	ACNGT	3 cut(s)	46, 407, 430
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	8 cut(s)	113, 341, 758, 775, 793, 823, 979, 1069
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 110, 347, 629, 638, 820
HpyF3I	CTNAG	7 cut(s)	117, 199, 438, 510, 647, 903, 1061
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	2 cut(s)	707, 1089
HspAI	GCGC	1 cut(s)	732
Kzo9I	GATC	4 cut(s)	273, 520, 540, 987
LmnI	GCTCC	6 cut(s)	88, 176, 470, 478, 511, 697
Lsp1109I	GCAGC	4 cut(s)	826, 977, 1027, 1053
LweI	GCATC	3 cut(s)	122, 385, 745
MaeI	CTAG	4 cut(s)	101, 108, 213, 573
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	4 cut(s)	424, 497, 513, 744
MalI	GATC	4 cut(s)	275, 522, 542, 989
MboI	GATC	4 cut(s)	273, 520, 540, 987
MboII	GAAGA	5 cut(s)	470, 779, 811, 883, 1059
MfeI	CAATTG	1 cut(s)	794
MflI	RGATCY	3 cut(s)	520, 540, 987
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	6 cut(s)	27, 420, 483, 679, 794, 973
MlyI	GAGTC	3 cut(s)	178, 521, 926
MseI	TTAA	3 cut(s)	578, 669, 1020
MslI	CAYNNNNRTG	2 cut(s)	408, 753
MspA1I	CMGCKG	1 cut(s)	37
MspR9I	CCNGG	2 cut(s)	55, 888
MunI	CAATTG	1 cut(s)	794
MvaI	CCWGG	2 cut(s)	55, 888
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	6 cut(s)	56, 110, 347, 629, 638, 820
NdeII	GATC	4 cut(s)	273, 520, 540, 987
NlaIII	CATG	2 cut(s)	707, 1089
NlaIV	GGNNCC	5 cut(s)	84, 178, 522, 542, 867
NmuCI	GTSAC	1 cut(s)	513
NspI	RCATGY	1 cut(s)	707
PasI	CCCWGGG	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	383, 716
PkrI	GCNGC	5 cut(s)	816, 967, 1000, 1042, 1068
PleI	GAGTC	3 cut(s)	178, 520, 926
PpsI	GAGTC	3 cut(s)	178, 520, 926
Psp124BI	GAGCTC	1 cut(s)	475
Psp6I	CCWGG	2 cut(s)	53, 886
PspFI	CCCAGC	1 cut(s)	907
PspGI	CCWGG	2 cut(s)	53, 886
PspN4I	GGNNCC	5 cut(s)	84, 178, 522, 542, 867
PspPI	GGNCC	1 cut(s)	865
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	3 cut(s)	520, 540, 987
PvuII	CAGCTG	1 cut(s)	37
RseI	CAYNNNNRTG	2 cut(s)	408, 753
SacI	GAGCTC	1 cut(s)	475
SaqAI	TTAA	3 cut(s)	578, 669, 1020
SatI	GCNGC	5 cut(s)	815, 966, 999, 1041, 1067
Sau3AI	GATC	4 cut(s)	273, 520, 540, 987
Sau96I	GGNCC	1 cut(s)	865
SchI	GAGTC	3 cut(s)	178, 521, 926
ScrFI	CCNGG	2 cut(s)	55, 888
SduI	GDGCHC	1 cut(s)	475
SfaNI	GCATC	3 cut(s)	122, 385, 745
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	865
SmiMI	CAYNNNNRTG	2 cut(s)	408, 753
SmlI	CTYRAG	3 cut(s)	533, 633, 654
SmoI	CTYRAG	3 cut(s)	533, 633, 654
Sse9I	AATT	6 cut(s)	27, 420, 483, 679, 794, 973
SsiI	CCGC	4 cut(s)	208, 561, 998, 1043
SspMI	CTAG	4 cut(s)	101, 108, 213, 573
SstI	GAGCTC	1 cut(s)	475
StyD4I	CCNGG	2 cut(s)	53, 886
TaaI	ACNGT	3 cut(s)	46, 407, 430
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	1 cut(s)	74
TasI	AATT	6 cut(s)	27, 420, 483, 679, 794, 973
TauI	GCSGC	1 cut(s)	1001
TfiI	GAWTC	2 cut(s)	383, 716
Tru1I	TTAA	3 cut(s)	578, 669, 1020
Tru9I	TTAA	3 cut(s)	578, 669, 1020
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	4 cut(s)	814, 965, 1040, 1066
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	1 cut(s)	158
TspGWI	ACGGA	1 cut(s)	980
TspRI	CASTG	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	865
XapI	RAATTY	1 cut(s)	973
XbaI	TCTAGA	1 cut(s)	572
XceI	RCATGY	1 cut(s)	707
XcmI	CCANNNNNNNNNTGG	2 cut(s)	155, 383
XspI	CTAG	4 cut(s)	101, 108, 213, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.