Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017906

Physical Location & Seq

Genomic Coordinates Reverse (-)

13391511 .. 13394369

Gene Structure 2859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00010580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGGCAGACAAGAAGTTTAGTAAAATTAGCCAGCTGGAGACAGTAGCACCCTGGGCAAACTGCCCCTTTTCGATGATGGCTCCATCAACCCTTCCTCTAGCCCCTAGTTCATCTCAGGTGTGGAAACGACCTTACTTGATGAACCATTTTGAAAATGGGGAAGGCAGTAGAGGAGCCAAGACTCATTTCCAGCCCTTAGATATCCACACCAGCACCACTACCCTTATCCCTACTCCTACCACCACCACTAACCCTACCACCGCCACGACCACTACCACCACCACCCCAATCACCACTACCACCCCTGCAGTTGAAGCAATAAAGGATAAGGGCAAGAAACCCCAGGAAGAATCTGAGAGTGATGCTGACCACGGAAATGATAATAAAATTGTTACTGTCAAGTCTGAGAAGGAGGAGACAGACGACACTCTGATTGGTGCTCCTCTGCAAATTAGAGTGGGTCGTAATGTAGCTCCTGAGTCACTGGATCCGAGAAAGCTCAAGAGGATCCTTTCAAACCGAGTTTCCGCACAAAAATCTAGATTAAAGAAGCTTCAATATGTTGCCGAAATGGAAAAGAAGGCAAAGGCTCTGGAGAATTATTTTCTACAAATGGAGCAACATGCCTTGAACGAATCAATATCTGCTCGCGCAGTTGACAAGTTACATAAAGATGCTCTAATTGAAGCAAACAAAGAAGAGGTGCAGAGATTGAGGCTACTGCAATTGAAGATATTTGAACAGCAGCAAATGCAGGCAAGCATGTTTATTAATATGGATGGTGTAGGGTCAATGGACCCGAAGATGGTGAACCATCCAGGTTTCACTCAATCTGAGCTGGGAAAGATGTTATATAGTTCAGACTCAAAAAAAGCACAAAGTGGAGAAAAGGCAGCAGCAGAGAATTTGCAGAACCAGATCCGTGAGGCTGCTGAACAAACGCTCGATGTGAAACCGAGCTTGGGAGTGGCTGCGGAAGGAAATAAGGAACTGAGGCTGCACTTCAATAAAACTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

340

Amino Acids

37.75

Weight (kDa)

8.39

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	163 - 205	3.7e-06	Basic region leucine zipper
bZIP_1	PF00170	166 - 206	3.8e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07160
fragaria_vesca	FvH4_3g39200
rosa_laevigata	RLG00000036147
rosa_multiflora	Rmu_sc0005197.1_g000019
rosa_roxburghii	Rroxscaffold_1G00010580
rosa_rugosa	Rorug05G0407300
rosa_samantha	Rh5AG463100 Rh5BG481000 Rh5CG505200 Rh5DG493100
rosa_wichuraiana	Rw5G043090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	654
AciI	CCGC	3 cut(s)	264, 531, 977
AclWI	GGATC	5 cut(s)	485, 498, 505, 518, 916
AcsI	RAATTY	1 cut(s)	907
AdeI	CACNNNGTG	1 cut(s)	884
AfiI	CCNNNNNNNGG	2 cut(s)	808, 965
AgsI	TTSAA	9 cut(s)	155, 317, 519, 560, 634, 689, 733, 743, 1009
AjnI	CCWGG	3 cut(s)	53, 345, 820
AjuI	GAANNNNNNNTTGG	4 cut(s)	173, 205, 947, 979
AluBI	AGCT	6 cut(s)	37, 476, 502, 556, 841, 963
AluI	AGCT	6 cut(s)	37, 476, 502, 556, 841, 963
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	35, 413
AlwI	GGATC	5 cut(s)	485, 498, 505, 518, 916
ApeKI	GCWGC	6 cut(s)	748, 896, 899, 932, 974, 1000
ApoI	RAATTY	1 cut(s)	907
AseI	ATTAAT	1 cut(s)	774
AspLEI	GCGC	1 cut(s)	656
AspS9I	GGNCC	1 cut(s)	799
AsuHPI	GGTGA	2 cut(s)	286, 823
AvaII	GGWCC	1 cut(s)	799
BamHI	GGATCC	2 cut(s)	490, 510
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	6 cut(s)	760, 908, 911, 919, 961, 987
BccI	CCATC	5 cut(s)	73, 94, 776, 802, 825
BciT130I	CCWGG	3 cut(s)	55, 347, 822
BcoDI	GTCTC	2 cut(s)	35, 413
BfaI	CTAG	3 cut(s)	101, 108, 543
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	6 cut(s)	749, 897, 900, 933, 975, 1001
BlsI	GCNGC	6 cut(s)	750, 898, 901, 934, 976, 1002
Bme1390I	CCNGG	3 cut(s)	55, 347, 822
Bme18I	GGWCC	1 cut(s)	799
BmgT120I	GGNCC	1 cut(s)	799
BmiI	GGNNCC	5 cut(s)	84, 178, 492, 512, 801
BmrFI	CCNGG	3 cut(s)	55, 347, 822
BmsI	GCATC	2 cut(s)	355, 667
BpmI	CTGGAG	2 cut(s)	59, 617
BpuEI	CTTGAG	1 cut(s)	488
BsaJI	CCNNGG	4 cut(s)	53, 54, 345, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	808, 965
Bse1I	ACTGG	1 cut(s)	492
BseBI	CCWGG	3 cut(s)	55, 347, 822
BseDI	CCNNGG	4 cut(s)	53, 54, 345, 373
BseGI	GGATG	2 cut(s)	787, 817
BseLI	CCNNNNNNNGG	2 cut(s)	808, 965
BseMII	CTCAG	6 cut(s)	131, 348, 399, 471, 828, 986
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	3 cut(s)	189, 431, 435
BseXI	GCAGC	6 cut(s)	760, 908, 911, 919, 961, 987
BseYI	CCCAGC	1 cut(s)	841
BsgI	GTGCAG	2 cut(s)	728, 986
Bsh1236I	CGCG	1 cut(s)	654
BsiHKAI	GWGCWC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	808, 965
BsmAI	GTCTC	2 cut(s)	35, 413
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	490, 510, 921
BspACI	CCGC	3 cut(s)	264, 531, 977
BspCNI	CTCAG	6 cut(s)	130, 349, 400, 472, 829, 987
BspFNI	CGCG	1 cut(s)	654
BspLI	GGNNCC	5 cut(s)	84, 178, 492, 512, 801
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	5 cut(s)	485, 498, 505, 518, 916
BsrI	ACTGG	1 cut(s)	492
BssECI	CCNNGG	4 cut(s)	53, 54, 345, 373
BssMI	GATC	3 cut(s)	490, 510, 921
Bst2UI	CCWGG	3 cut(s)	55, 347, 822
Bst4CI	ACNGT	2 cut(s)	46, 400
Bst6I	CTCTTC	1 cut(s)	696
BstAPI	GCANNNNNTGC	1 cut(s)	754
BstC8I	GCNNGC	4 cut(s)	35, 652, 759, 763
BstDEI	CTNAG	7 cut(s)	117, 199, 357, 408, 480, 837, 995
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	2 cut(s)	787, 817
BstFNI	CGCG	1 cut(s)	654
BstHHI	GCGC	1 cut(s)	656
BstKTI	GATC	3 cut(s)	493, 513, 924
BstMAI	GTCTC	2 cut(s)	35, 413
BstMBI	GATC	3 cut(s)	490, 510, 921
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 317, 754
BstNI	CCWGG	3 cut(s)	55, 347, 822
BstNSI	RCATGY	2 cut(s)	629, 769
BstSCI	CCNGG	3 cut(s)	53, 345, 820
BstSFI	CTRYAG	1 cut(s)	309
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	6 cut(s)	760, 908, 911, 919, 961, 987
BstX2I	RGATCY	3 cut(s)	490, 510, 921
BstYI	RGATCY	3 cut(s)	490, 510, 921
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	787, 817
BtsIMutI	CAGTG	1 cut(s)	485
Cac8I	GCNNGC	4 cut(s)	35, 652, 759, 763
CfoI	GCGC	1 cut(s)	656
Cfr13I	GGNCC	1 cut(s)	799
CviAII	CATG	3 cut(s)	626, 766, 1020
DdeI	CTNAG	7 cut(s)	117, 199, 357, 408, 480, 837, 995
DpnI	GATC	3 cut(s)	492, 512, 923
DpnII	GATC	3 cut(s)	490, 510, 921
DraIII	CACNNNGTG	1 cut(s)	884
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	799
EcoRII	CCWGG	3 cut(s)	53, 345, 820
EcoRV	GATATC	1 cut(s)	205
FaeI	CATG	3 cut(s)	629, 769, 1023
FaiI	YATR	8 cut(s)	564, 627, 672, 767, 779, 856, 858, 1021
FatI	CATG	3 cut(s)	625, 765, 1019
Fnu4HI	GCNGC	6 cut(s)	749, 897, 900, 933, 975, 1001
FokI	GGATG	2 cut(s)	794, 804
Fsp4HI	GCNGC	6 cut(s)	749, 897, 900, 933, 975, 1001
FspBI	CTAG	3 cut(s)	101, 108, 543
GlaI	GCGC	1 cut(s)	655
GluI	GCNGC	6 cut(s)	749, 897, 900, 933, 975, 1001
GsaI	CCCAGC	1 cut(s)	845
GsuI	CTGGAG	2 cut(s)	59, 617
HhaI	GCGC	1 cut(s)	656
Hin1II	CATG	3 cut(s)	629, 769, 1023
Hin6I	GCGC	1 cut(s)	654
HinP1I	GCGC	1 cut(s)	654
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	5 cut(s)	184, 353, 482, 638, 866
HphI	GGTGA	2 cut(s)	286, 823
Hpy166II	GTNNAC	2 cut(s)	661, 814
Hpy188I	TCNGA	6 cut(s)	358, 409, 435, 495, 838, 865
Hpy188III	TCNNGA	4 cut(s)	479, 505, 543, 596
Hpy8I	GTNNAC	2 cut(s)	661, 814
HpyAV	CCTTC	5 cut(s)	104, 158, 406, 577, 974
HpyCH4III	ACNGT	2 cut(s)	46, 400
HpyCH4V	TGCA	7 cut(s)	311, 451, 709, 727, 757, 913, 1003
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 317, 754
HpyF3I	CTNAG	7 cut(s)	117, 199, 357, 408, 480, 837, 995
Hsp92II	CATG	3 cut(s)	629, 769, 1023
HspAI	GCGC	1 cut(s)	654
Kzo9I	GATC	3 cut(s)	490, 510, 921
LmnI	GCTCC	5 cut(s)	88, 176, 448, 481, 619
Lsp1109I	GCAGC	6 cut(s)	760, 908, 911, 919, 961, 987
LweI	GCATC	2 cut(s)	355, 667
MaeI	CTAG	3 cut(s)	101, 108, 543
MaeIII	GTNAC	3 cut(s)	394, 483, 666
MalI	GATC	3 cut(s)	492, 512, 923
MboI	GATC	3 cut(s)	490, 510, 921
MboII	GAAGA	4 cut(s)	362, 713, 745, 817
MfeI	CAATTG	1 cut(s)	728
MflI	RGATCY	3 cut(s)	490, 510, 921
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	7 cut(s)	27, 390, 453, 601, 684, 728, 907
MlyI	GAGTC	3 cut(s)	178, 491, 860
MnlI	CCTC	9 cut(s)	108, 167, 409, 456, 501, 697, 711, 922, 990
MseI	TTAA	2 cut(s)	548, 774
MslI	CAYNNNNRTG	2 cut(s)	378, 675
MspA1I	CMGCKG	1 cut(s)	37
MspR9I	CCNGG	3 cut(s)	55, 347, 822
MunI	CAATTG	1 cut(s)	728
MvaI	CCWGG	3 cut(s)	55, 347, 822
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	3 cut(s)	56, 317, 754
NdeII	GATC	3 cut(s)	490, 510, 921
NlaIII	CATG	3 cut(s)	629, 769, 1023
NlaIV	GGNNCC	5 cut(s)	84, 178, 492, 512, 801
NmuCI	GTSAC	1 cut(s)	483
NspI	RCATGY	2 cut(s)	629, 769
PasI	CCCWGGG	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	353, 638
PkrI	GCNGC	6 cut(s)	750, 898, 901, 934, 976, 1002
PleI	GAGTC	3 cut(s)	178, 490, 860
PpsI	GAGTC	3 cut(s)	178, 490, 860
PshBI	ATTAAT	1 cut(s)	774
Psp6I	CCWGG	3 cut(s)	53, 345, 820
PspFI	CCCAGC	1 cut(s)	841
PspGI	CCWGG	3 cut(s)	53, 345, 820
PspN4I	GGNNCC	5 cut(s)	84, 178, 492, 512, 801
PspPI	GGNCC	1 cut(s)	799
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	3 cut(s)	490, 510, 921
PvuII	CAGCTG	1 cut(s)	37
RseI	CAYNNNNRTG	2 cut(s)	378, 675
SaqAI	TTAA	2 cut(s)	548, 774
SatI	GCNGC	6 cut(s)	749, 897, 900, 933, 975, 1001
Sau3AI	GATC	3 cut(s)	490, 510, 921
Sau96I	GGNCC	1 cut(s)	799
SchI	GAGTC	3 cut(s)	178, 491, 860
ScrFI	CCNGG	3 cut(s)	55, 347, 822
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	2 cut(s)	355, 667
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	799
SmiMI	CAYNNNNRTG	2 cut(s)	378, 675
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	7 cut(s)	27, 390, 453, 601, 684, 728, 907
SsiI	CCGC	3 cut(s)	264, 531, 977
SspMI	CTAG	3 cut(s)	101, 108, 543
StyD4I	CCNGG	3 cut(s)	53, 345, 820
TaaI	ACNGT	2 cut(s)	46, 400
TaqI	TCGA	2 cut(s)	74, 948
TasI	AATT	7 cut(s)	27, 390, 453, 601, 684, 728, 907
TfiI	GAWTC	2 cut(s)	353, 638
Tru1I	TTAA	2 cut(s)	548, 774
Tru9I	TTAA	2 cut(s)	548, 774
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	6 cut(s)	748, 896, 899, 932, 974, 1000
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	2 cut(s)	102, 158
TspGWI	ACGGA	2 cut(s)	390, 914
TspRI	CASTG	1 cut(s)	492
VpaK11BI	GGWCC	1 cut(s)	799
VspI	ATTAAT	1 cut(s)	774
XapI	RAATTY	1 cut(s)	907
XbaI	TCTAGA	1 cut(s)	542
XceI	RCATGY	2 cut(s)	629, 769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XspI	CTAG	3 cut(s)	101, 108, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.