Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017906

Physical Location & Seq

Genomic Coordinates Forward (+)

79215723 .. 79220477

Gene Structure 4755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG463100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAGGCAGACAAGAAGTTTAGTAAAATTAGCCAGCTGGAGACAGTAGCACCCTGGGCAAACAGCCCCTTTTCGATGATGGCTCCATCAACCCTTCCTCTAGCCCCTAGTTCATCTCAGGTGTGGAAACGACCTTACTTGATGAACCATTTTGAAAATGGGGAAGGCAATAGAGGAGCCAAGACTCATTTCCAGCCCTTAGATATCCGCACTAGCACCACTACCCTTATCCCTACTCCTACCACCACCACTAACCCTACCCCTACCGCCACGACCACCACAACCACTACCACCACCCCTACCCCTTCCACCACCCCTACCCCTTCCACCACGACCCCAATCCCCAGTACCACCCCTGCAGTTGAAGCAATAAAGGATAAGGGCAAGAAACCCCAGAAAGAATCTGGGAGTGATGCTGACCACGGTAATGATAATAAAATTGTTACTGTCAAGACTGAGAAGGAGGAGACAGACGACACTCTGATTGGTGCTCCTCTTCAAATTAGAGTGGGTCGTAACGTAGCTCCTGAGTCACTGGATCCGAGAAAGCTCAAGAGGATCCTTTCAAACCGAGTTTCCGCACAAAAATCTAGATTAAAGAAGCTTCAATATGTTGCCGAAATGGAAAAGAAGGCAAAGGCTCTGGAGGCTCAAGTAGCTCTGCTAAGTCCTCAAGTGGAGTTCTTTAAAAACCAGAATTATTTTCTACAAATGGAGCAACATGCCTTGAACGAATCAATATCTGTTCGCGCAGTTGACAAGTTACATAAAGATGCTCTAATTGAAGCAAACAAAGAAGAGGTGCAGAGATTGAGGCTACTGCAATTGAAGATATTTGAACAGCAGCAAATGCAGGCAAGCATGTTTATTAATATGGATGGTGTAGGGTCAATGGACCCAAAGATGGTGAACTATCCAGGTTTCACTCAATCTGAGCTGGGAAAGATGTTATGTAGTTCAGACTCAAAAAAAGCACAAAGTGGAGAAAAGACAGCAGCAGAGAATTTTCAGAACCAGATCCGTGAGGCGGCTGAACAAACGCCCGATGTTAAACCGAGCTTGGGAGTGGCTGCGGGAAGAAATAAGGAACTGAGGCTGCACTTCAATAAAACTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

372

Amino Acids

41.14

Weight (kDa)

9.3

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	179 - 227	1.4e-07	Basic region leucine zipper
bZIP_1	PF00170	182 - 239	5.3e-10	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07160
fragaria_vesca	FvH4_3g39200
rosa_laevigata	RLG00000036147
rosa_multiflora	Rmu_sc0005197.1_g000019
rosa_roxburghii	Rroxscaffold_1G00010580
rosa_rugosa	Rorug05G0407300
rosa_samantha	Rh5AG463100 Rh5BG481000 Rh5CG505200 Rh5DG493100
rosa_wichuraiana	Rw5G043090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	750
AciI	CCGC	5 cut(s)	208, 267, 579, 1028, 1073
AclWI	GGATC	5 cut(s)	533, 546, 553, 566, 1012
AcsI	RAATTY	1 cut(s)	1003
AdeI	CACNNNGTG	1 cut(s)	980
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	3 cut(s)	904, 1027, 1061
AjnI	CCWGG	2 cut(s)	53, 916
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	7 cut(s)	37, 524, 550, 604, 659, 937, 1059
AluI	AGCT	7 cut(s)	37, 524, 550, 604, 659, 937, 1059
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	2 cut(s)	35, 461
AlwI	GGATC	5 cut(s)	533, 546, 553, 566, 1012
ApeKI	GCWGC	4 cut(s)	844, 995, 1070, 1096
ApoI	RAATTY	1 cut(s)	1003
AseI	ATTAAT	1 cut(s)	870
AspLEI	GCGC	1 cut(s)	752
AspS9I	GGNCC	1 cut(s)	895
AsuHPI	GGTGA	1 cut(s)	919
AvaII	GGWCC	1 cut(s)	895
BamHI	GGATCC	2 cut(s)	538, 558
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	4 cut(s)	856, 1007, 1057, 1083
BccI	CCATC	4 cut(s)	73, 94, 872, 898
BciT130I	CCWGG	2 cut(s)	55, 918
BcoDI	GTCTC	2 cut(s)	35, 461
BfaI	CTAG	4 cut(s)	101, 108, 213, 591
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	5 cut(s)	845, 996, 1029, 1071, 1097
BlsI	GCNGC	5 cut(s)	846, 997, 1030, 1072, 1098
Bme1390I	CCNGG	2 cut(s)	55, 918
Bme18I	GGWCC	1 cut(s)	895
BmgT120I	GGNCC	1 cut(s)	895
BmiI	GGNNCC	5 cut(s)	84, 178, 540, 560, 897
BmrFI	CCNGG	2 cut(s)	55, 918
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	2 cut(s)	403, 763
BmuI	ACTGGG	1 cut(s)	339
BpmI	CTGGAG	2 cut(s)	59, 665
BpuEI	CTTGAG	3 cut(s)	536, 636, 657
BsaJI	CCNNGG	3 cut(s)	53, 54, 421
Bsc4I	CCNNNNNNNGG	3 cut(s)	904, 1027, 1061
Bse1I	ACTGG	2 cut(s)	345, 540
BseBI	CCWGG	2 cut(s)	55, 918
BseDI	CCNNGG	3 cut(s)	53, 54, 421
BseGI	GGATG	1 cut(s)	883
BseLI	CCNNNNNNNGG	3 cut(s)	904, 1027, 1061
BseMII	CTCAG	5 cut(s)	131, 447, 519, 924, 1082
BseNI	ACTGG	2 cut(s)	345, 540
BseRI	GAGGAG	3 cut(s)	189, 479, 483
BseXI	GCAGC	4 cut(s)	856, 1007, 1057, 1083
BseYI	CCCAGC	1 cut(s)	937
BsgI	GTGCAG	2 cut(s)	824, 1082
Bsh1236I	CGCG	1 cut(s)	750
BsiHKAI	GWGCWC	1 cut(s)	493
BslI	CCNNNNNNNGG	3 cut(s)	904, 1027, 1061
BsmAI	GTCTC	2 cut(s)	35, 461
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	3 cut(s)	538, 558, 1017
BspACI	CCGC	5 cut(s)	208, 267, 579, 1028, 1073
BspCNI	CTCAG	5 cut(s)	130, 448, 520, 925, 1083
BspFNI	CGCG	1 cut(s)	750
BspLI	GGNNCC	5 cut(s)	84, 178, 540, 560, 897
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	5 cut(s)	533, 546, 553, 566, 1012
BsrI	ACTGG	2 cut(s)	345, 540
BssECI	CCNNGG	3 cut(s)	53, 54, 421
BssMI	GATC	3 cut(s)	538, 558, 1017
Bst2UI	CCWGG	2 cut(s)	55, 918
Bst4CI	ACNGT	3 cut(s)	46, 425, 448
Bst6I	CTCTTC	2 cut(s)	501, 792
BstAPI	GCANNNNNTGC	1 cut(s)	850
BstC8I	GCNNGC	3 cut(s)	35, 855, 859
BstDEI	CTNAG	7 cut(s)	117, 199, 456, 528, 665, 933, 1091
BstDSI	CCRYGG	1 cut(s)	421
BstF5I	GGATG	1 cut(s)	883
BstFNI	CGCG	1 cut(s)	750
BstHHI	GCGC	1 cut(s)	752
BstKTI	GATC	3 cut(s)	541, 561, 1020
BstMAI	GTCTC	2 cut(s)	35, 461
BstMBI	GATC	3 cut(s)	538, 558, 1017
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 365, 647, 656, 850
BstNI	CCWGG	2 cut(s)	55, 918
BstNSI	RCATGY	2 cut(s)	725, 865
BstSCI	CCNGG	2 cut(s)	53, 916
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	750
BstV1I	GCAGC	4 cut(s)	856, 1007, 1057, 1083
BstX2I	RGATCY	3 cut(s)	538, 558, 1017
BstYI	RGATCY	3 cut(s)	538, 558, 1017
BtgI	CCRYGG	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	883
BtsIMutI	CAGTG	1 cut(s)	533
Cac8I	GCNNGC	3 cut(s)	35, 855, 859
CfoI	GCGC	1 cut(s)	752
Cfr13I	GGNCC	1 cut(s)	895
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	3 cut(s)	722, 862, 1116
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	7 cut(s)	117, 199, 456, 528, 665, 933, 1091
DpnI	GATC	3 cut(s)	540, 560, 1019
DpnII	GATC	3 cut(s)	538, 558, 1017
DraI	TTTAAA	1 cut(s)	688
DraIII	CACNNNGTG	1 cut(s)	980
Eam1104I	CTCTTC	2 cut(s)	501, 792
EarI	CTCTTC	2 cut(s)	501, 792
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	895
EcoRII	CCWGG	2 cut(s)	53, 916
EcoRV	GATATC	1 cut(s)	205
FaeI	CATG	3 cut(s)	725, 865, 1119
FaiI	YATR	7 cut(s)	612, 723, 768, 863, 875, 952, 1117
FatI	CATG	3 cut(s)	721, 861, 1115
FauI	CCCGC	1 cut(s)	1066
Fnu4HI	GCNGC	5 cut(s)	845, 996, 1029, 1071, 1097
FokI	GGATG	1 cut(s)	890
Fsp4HI	GCNGC	5 cut(s)	845, 996, 1029, 1071, 1097
FspBI	CTAG	4 cut(s)	101, 108, 213, 591
GlaI	GCGC	1 cut(s)	751
GluI	GCNGC	5 cut(s)	845, 996, 1029, 1071, 1097
GsaI	CCCAGC	1 cut(s)	941
GsuI	CTGGAG	2 cut(s)	59, 665
HhaI	GCGC	1 cut(s)	752
Hin1II	CATG	3 cut(s)	725, 865, 1119
Hin6I	GCGC	1 cut(s)	750
HinP1I	GCGC	1 cut(s)	750
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	5 cut(s)	184, 401, 530, 734, 962
HphI	GGTGA	1 cut(s)	919
Hpy166II	GTNNAC	2 cut(s)	757, 910
Hpy188I	TCNGA	5 cut(s)	483, 543, 934, 961, 1011
Hpy188III	TCNNGA	5 cut(s)	451, 527, 553, 591, 644
Hpy8I	GTNNAC	2 cut(s)	757, 910
HpyAV	CCTTC	6 cut(s)	104, 158, 315, 333, 454, 625
HpyCH4III	ACNGT	3 cut(s)	46, 425, 448
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	5 cut(s)	359, 805, 823, 853, 1099
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 365, 647, 656, 850
HpyF3I	CTNAG	7 cut(s)	117, 199, 456, 528, 665, 933, 1091
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	3 cut(s)	725, 865, 1119
HspAI	GCGC	1 cut(s)	750
Kzo9I	GATC	3 cut(s)	538, 558, 1017
LmnI	GCTCC	5 cut(s)	88, 176, 496, 529, 715
Lsp1109I	GCAGC	4 cut(s)	856, 1007, 1057, 1083
LweI	GCATC	2 cut(s)	403, 763
MaeI	CTAG	4 cut(s)	101, 108, 213, 591
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	4 cut(s)	442, 515, 531, 762
MalI	GATC	3 cut(s)	540, 560, 1019
MboI	GATC	3 cut(s)	538, 558, 1017
MboII	GAAGA	4 cut(s)	488, 809, 841, 1089
MfeI	CAATTG	1 cut(s)	824
MflI	RGATCY	3 cut(s)	538, 558, 1017
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	7 cut(s)	27, 438, 501, 697, 780, 824, 1003
MlyI	GAGTC	3 cut(s)	178, 539, 956
MseI	TTAA	4 cut(s)	596, 687, 870, 1050
MslI	CAYNNNNRTG	2 cut(s)	426, 771
MspA1I	CMGCKG	1 cut(s)	37
MspR9I	CCNGG	2 cut(s)	55, 918
MunI	CAATTG	1 cut(s)	824
MvaI	CCWGG	2 cut(s)	55, 918
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	5 cut(s)	56, 365, 647, 656, 850
NdeII	GATC	3 cut(s)	538, 558, 1017
NlaIII	CATG	3 cut(s)	725, 865, 1119
NlaIV	GGNNCC	5 cut(s)	84, 178, 540, 560, 897
NmuCI	GTSAC	1 cut(s)	531
NspI	RCATGY	2 cut(s)	725, 865
PasI	CCCWGGG	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	401, 734
PkrI	GCNGC	5 cut(s)	846, 997, 1030, 1072, 1098
PleI	GAGTC	3 cut(s)	178, 538, 956
PpsI	GAGTC	3 cut(s)	178, 538, 956
PshBI	ATTAAT	1 cut(s)	870
Psp6I	CCWGG	2 cut(s)	53, 916
PspFI	CCCAGC	1 cut(s)	937
PspGI	CCWGG	2 cut(s)	53, 916
PspN4I	GGNNCC	5 cut(s)	84, 178, 540, 560, 897
PspPI	GGNCC	1 cut(s)	895
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	3 cut(s)	538, 558, 1017
PvuII	CAGCTG	1 cut(s)	37
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	2 cut(s)	426, 771
SaqAI	TTAA	4 cut(s)	596, 687, 870, 1050
SatI	GCNGC	5 cut(s)	845, 996, 1029, 1071, 1097
Sau3AI	GATC	3 cut(s)	538, 558, 1017
Sau96I	GGNCC	1 cut(s)	895
SchI	GAGTC	3 cut(s)	178, 539, 956
ScrFI	CCNGG	2 cut(s)	55, 918
SduI	GDGCHC	1 cut(s)	493
SfaNI	GCATC	2 cut(s)	403, 763
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	895
SmiMI	CAYNNNNRTG	2 cut(s)	426, 771
SmlI	CTYRAG	3 cut(s)	551, 651, 672
SmoI	CTYRAG	3 cut(s)	551, 651, 672
Sse9I	AATT	7 cut(s)	27, 438, 501, 697, 780, 824, 1003
SsiI	CCGC	5 cut(s)	208, 267, 579, 1028, 1073
SspMI	CTAG	4 cut(s)	101, 108, 213, 591
StyD4I	CCNGG	2 cut(s)	53, 916
TaaI	ACNGT	3 cut(s)	46, 425, 448
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	1 cut(s)	74
TasI	AATT	7 cut(s)	27, 438, 501, 697, 780, 824, 1003
TauI	GCSGC	1 cut(s)	1031
TfiI	GAWTC	2 cut(s)	401, 734
Tru1I	TTAA	4 cut(s)	596, 687, 870, 1050
Tru9I	TTAA	4 cut(s)	596, 687, 870, 1050
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	1 cut(s)	531
TseI	GCWGC	4 cut(s)	844, 995, 1070, 1096
Tsp45I	GTSAC	1 cut(s)	531
TspDTI	ATGAA	2 cut(s)	102, 158
TspGWI	ACGGA	1 cut(s)	1010
TspRI	CASTG	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	895
VspI	ATTAAT	1 cut(s)	870
XapI	RAATTY	1 cut(s)	1003
XbaI	TCTAGA	1 cut(s)	590
XceI	RCATGY	2 cut(s)	725, 865
XcmI	CCANNNNNNNNNTGG	2 cut(s)	155, 401
XspI	CTAG	4 cut(s)	101, 108, 213, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.