Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0017906

Physical Location & Seq

Genomic Coordinates Reverse (-)

56144184 .. 56145235

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0407300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAAGCCAAAGAACCCACAACAATGATGTGCACACTTCTGGCAATAGACCACACCGACTTCTCTTACAGAGCATGCTCCCTCTGCGAGAGGACTCTCCCTGACAACCCATCTTCCCTCTGTAGATACTGCAACCCCTCTGCCTTCAACCCCCGCTTCCCTCGCTCCAAACGCTTCTTTCGCATTCTTATGTCAATTGCTTCGGATACCAAGGTGTTCACTGTCATATGCTTTGATAGGGTAGCCAAGGTCCTCTTTGGTTGCTCTGCTGATGAGTTTTTCGACTTTGCGAAATTTCACCCTTTTGCTGCTGCTAATGCTAGTAGAATTCTGGAGGGAGAGATGTTTAAGATGACAATATCCAAACCGAAGAATGGTAATGCACAAAATCTGCGAGCAGTACAAGTTGTACCATTGAAGACTGGTTTTCAGCCGGCAATTGTGACCTTGAGGGAATTGTATGGAGTAAGAAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

159

Amino Acids

17.93

Weight (kDa)

9.21

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rep_fac-A_C	PF08646	8 - 107	4.7e-07	Replication factor-A C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07160
fragaria_vesca	FvH4_3g39200
rosa_laevigata	RLG00000036147
rosa_multiflora	Rmu_sc0005197.1_g000019
rosa_roxburghii	Rroxscaffold_1G00010580
rosa_rugosa	Rorug05G0407300
rosa_samantha	Rh5AG463100 Rh5BG481000 Rh5CG505200 Rh5DG493100
rosa_wichuraiana	Rw5G043090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	293, 327
AfaI	GTAC	2 cut(s)	402, 411
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	148, 418
AluBI	AGCT	1 cut(s)	474
AluI	AGCT	1 cut(s)	474
Alw21I	GWGCWC	1 cut(s)	35
Alw44I	GTGCAC	1 cut(s)	31
ApaLI	GTGCAC	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	308, 311
ApoI	RAATTY	2 cut(s)	293, 327
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	35
BaeI	ACNNNNGTAYC	2 cut(s)	198, 231
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	295, 298
BccI	CCATC	1 cut(s)	118
BciVI	GTATCC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	121
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	309, 312
BlsI	GCNGC	2 cut(s)	310, 313
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	425
BpmI	CTGGAG	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	469
BsaJI	CCNNGG	2 cut(s)	210, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	427
BseDI	CCNNGG	2 cut(s)	210, 246
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	427
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	295, 298
BsiHKAI	GWGCWC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	35
BspACI	CCGC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	210, 246
BssT1I	CCWWGG	2 cut(s)	210, 246
Bst4CI	ACNGT	1 cut(s)	223
BstC8I	GCNNGC	3 cut(s)	76, 396, 435
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 162, 171, 180, 317
BstNSI	RCATGY	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	295, 298
BstV2I	GAAGAC	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	3 cut(s)	76, 396, 435
Cfr10I	RCCGGY	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	401, 410
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	4 cut(s)	8, 245, 433, 474
CviKI_1	RGCY	4 cut(s)	8, 245, 433, 474
CviQI	GTAC	2 cut(s)	401, 410
Eco130I	CCWWGG	2 cut(s)	210, 246
Eco47I	GGWCC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	327
EcoT14I	CCWWGG	2 cut(s)	210, 246
ErhI	CCWWGG	2 cut(s)	210, 246
FaeI	CATG	1 cut(s)	78
FaiI	YATR	5 cut(s)	76, 191, 227, 229, 462
FalI	AAGNNNNNCTT	3 cut(s)	239, 271, 460
FatI	CATG	1 cut(s)	74
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	227
Fnu4HI	GCNGC	2 cut(s)	309, 312
Fsp4HI	GCNGC	2 cut(s)	309, 312
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	2 cut(s)	309, 312
GsuI	CTGGAG	1 cut(s)	353
HapII	CCGG	1 cut(s)	434
Hin1II	CATG	1 cut(s)	78
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	33, 219
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	332, 477
Hpy8I	GTNNAC	2 cut(s)	33, 219
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	3 cut(s)	33, 132, 383
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 162, 171, 180, 317
Hsp92II	CATG	1 cut(s)	78
KroI	GCCGGC	1 cut(s)	433
KroNI	GCCGGC	1 cut(s)	435
LmnI	GCTCC	2 cut(s)	83, 170
LpnPI	CCDG	5 cut(s)	26, 114, 317, 408, 447
Lsp1109I	GCAGC	2 cut(s)	295, 298
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	442
MboII	GAAGA	3 cut(s)	105, 382, 430
MfeI	CAATTG	2 cut(s)	195, 438
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	5 cut(s)	195, 293, 327, 438, 455
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	8 cut(s)	84, 92, 128, 148, 171, 263, 328, 444
MroNI	GCCGGC	1 cut(s)	433
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	2 cut(s)	23, 188
MspI	CCGG	1 cut(s)	434
MunI	CAATTG	2 cut(s)	195, 438
Mva1269I	GAATGC	1 cut(s)	183
MwoI	GCNNNNNNNGC	5 cut(s)	84, 162, 171, 180, 317
NaeI	GCCGGC	1 cut(s)	435
NdeI	CATATG	1 cut(s)	227
NgoMIV	GCCGGC	1 cut(s)	433
NlaIII	CATG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	1 cut(s)	78
PaeI	GCATGC	1 cut(s)	78
PctI	GAATGC	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	310, 313
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	250
PspPPI	RGGWCCY	1 cut(s)	250
RsaI	GTAC	2 cut(s)	402, 411
RsaNI	GTAC	2 cut(s)	401, 410
RseI	CAYNNNNRTG	2 cut(s)	23, 188
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	2 cut(s)	309, 312
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	4 cut(s)	216, 252, 449, 476
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	1 cut(s)	250
SmiMI	CAYNNNNRTG	2 cut(s)	23, 188
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
SphI	GCATGC	1 cut(s)	78
Sse9I	AATT	5 cut(s)	195, 293, 327, 438, 455
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	321
StyI	CCWWGG	2 cut(s)	210, 246
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	282
TasI	AATT	5 cut(s)	195, 293, 327, 438, 455
TatI	WGTACW	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	2 cut(s)	308, 311
Tsp45I	GTSAC	1 cut(s)	442
TspRI	CASTG	1 cut(s)	226
VneI	GTGCAC	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	2 cut(s)	293, 327
XceI	RCATGY	1 cut(s)	78
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.