AT5G07930

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011943
Physical Location & Seq
Forward (+)
2530834 .. 2532742
1909 bp
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UTR
Exon/CDS
Intron
AT5G07930.2

Sequence Viewer

Length: 849 bp
ATGGCTTCTTCCGATGATCCAGCTCCGGAGAACAACCACGTCTCCGTCTTAGCTAGACAAGCTCGAAACCCACCGACACATTTTTTCTTTCCTCACAATCCTTCTCCTCGTACTTACTACTTCTCGGCGCCACCACAGATTTATTTCATCTCCGACATATATCTCCCTCCTCCTCCATCAATATGGGTGTATTATCCTCTTTGGTATATTAACCCTAACCCTAATGTATATGAGTCTACACAAGAACTTCCTCAACGTTACTCTCCAAACCCTAGCCAAGAGATGACTCTTCCACCGACTAGTAGTAGAAGAGTTTTTGGCCGGAGAAGTTACGAACTATGTGAGAAGGTGACATGGAGGACAAGTATCAAGCCGGAAGTTGAATCCAACGGTGATCACATCACAACCGTCATGCTTCGCAATATACCGAACCGATACACGAGAGAGATGATGATTCAGTTCATGGATAAGCATTGCGAAGAAGCCAATAAAAGTGGGAAAAATGAAGAGTTTACAATCTCTGCTTATGATTTTATTTACCTTCCGATAGACTTTAGGACTACAATGAACAAAGGGTATGCTTTCGTGAACTTCACAAATGCAAAAGCAGTGTCCAAGTTTAAGGCTGCTTGCAACAACAAGCCGTGGTGCCATTTCTACTCAAAAAAAGAACTTGAGATTACTTATGCTAGAATTCAGGCTAATGAGCTGGTGAAACGTTTCCAGCATATGACATATCCGGAGGAGGCCTACAGTGCGGTATGTTTCAGCCCAGCTCGTAGCGGAGGGAAAGATACAGTTCAAACCACAATGGTCGGTAAATGCAATGAACCAGTGTGCTCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

282

Amino Acids

32.7

Weight (kDa)

8.56

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 135 - 236 5e-21 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07930 AT5G07930 AT5G07930
fragaria_vesca FvH4_2g10100 FvH4_2g10100
malus_domestica MD10G1065500.v1.1
prunus_persica Prupe.8G087500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0267061
rosa_laevigata RLG00000014045
rosa_multiflora Rmu_co8325855.1_g000001 Rmu_co8394061.1_g000001 Rmu_sc0013804.1_g000004
rosa_roxburghii Rroxscaffold_7G00201180
rosa_rugosa Rorug06G0028800
rosa_samantha Rh6AG150300 Rh6BG151200 Rh6CG146600 Rh6DG135300
rosa_wichuraiana Rw6G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 127, 648
AccI GTMKAC 1 cut(s) 236
AccIII TCCGGA 2 cut(s) 25, 739
AciI CCGC 2 cut(s) 758, 783
AclI AACGTT 2 cut(s) 256, 718
AclWI GGATC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 1 cut(s) 693
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 1 cut(s) 112
AgsI TTSAA 2 cut(s) 383, 803
AhlI ACTAGT 1 cut(s) 299
AjiI CACGTC 1 cut(s) 40
AluBI AGCT 5 cut(s) 23, 53, 62, 709, 776
AluI AGCT 5 cut(s) 23, 53, 62, 709, 776
Alw21I GWGCWC 1 cut(s) 842
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 11
Aor13HI TCCGGA 2 cut(s) 25, 739
AoxI GGCC 2 cut(s) 319, 747
ApeKI GCWGC 1 cut(s) 626
ApoI RAATTY 1 cut(s) 693
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
Asp700I GAANNNNTTC 1 cut(s) 719
AspLEI GCGC 1 cut(s) 130
AsuHPI GGTGA 3 cut(s) 361, 404, 724
BanI GGYRCC 2 cut(s) 127, 648
BauI CACGAG 1 cut(s) 439
Bbv12I GWGCWC 1 cut(s) 842
BbvI GCAGC 1 cut(s) 613
BccI CCATC 1 cut(s) 184
BceAI ACGGC 1 cut(s) 628
BclI TGATCA 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 46
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 4 cut(s) 54, 273, 300, 690
BfmI CTRYAG 1 cut(s) 751
BfoI RGCGCY 1 cut(s) 131
BisI GCNGC 1 cut(s) 627
BlsI GCNGC 1 cut(s) 628
BmgBI CACGTC 1 cut(s) 40
BmiI GGNNCC 2 cut(s) 129, 650
BpuEI CTTGAG 1 cut(s) 695
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 644
BsaWI WCCGGW 2 cut(s) 25, 739
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 349, 379
Bse1I ACTGG 1 cut(s) 833
Bse3DI GCAATG 2 cut(s) 472, 832
BseAI TCCGGA 2 cut(s) 25, 739
BseDI CCNNGG 1 cut(s) 644
BseMI GCAATG 2 cut(s) 472, 832
BseNI ACTGG 1 cut(s) 833
BseRI GAGGAG 4 cut(s) 96, 159, 162, 758
BseXI GCAGC 1 cut(s) 613
BseYI CCCAGC 1 cut(s) 772
BshFI GGCC 2 cut(s) 321, 749
BshNI GGYRCC 2 cut(s) 127, 648
BsiHKAI GWGCWC 1 cut(s) 842
BsiSI CCGG 4 cut(s) 26, 322, 374, 740
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsnI GGCC 2 cut(s) 321, 749
Bsp1286I GDGCHC 1 cut(s) 842
Bsp13I TCCGGA 2 cut(s) 25, 739
Bsp143I GATC 2 cut(s) 16, 394
BspACI CCGC 2 cut(s) 758, 783
BspANI GGCC 2 cut(s) 321, 749
BspEI TCCGGA 2 cut(s) 25, 739
BspLI GGNNCC 2 cut(s) 129, 650
BspPI GGATC 1 cut(s) 11
BspT107I GGYRCC 2 cut(s) 127, 648
BsrDI GCAATG 2 cut(s) 472, 832
BsrI ACTGG 1 cut(s) 833
BssECI CCNNGG 1 cut(s) 644
BssMI GATC 2 cut(s) 16, 394
BssNI GRCGYC 1 cut(s) 128
BssSI CACGAG 1 cut(s) 439
Bst2BI CACGAG 1 cut(s) 439
Bst4CI ACNGT 4 cut(s) 392, 409, 755, 799
Bst6I CTCTTC 3 cut(s) 294, 304, 501
BstACI GRCGYC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 631
BstDEI CTNAG 1 cut(s) 49
BstDSI CCRYGG 1 cut(s) 644
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 2 cut(s) 19, 397
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 2 cut(s) 16, 394
BstMWI GCNNNNNNNGC 2 cut(s) 59, 755
BstSFI CTRYAG 1 cut(s) 751
BstV1I GCAGC 1 cut(s) 613
BstXI CCANNNNNNTGG 1 cut(s) 183
BsuRI GGCC 2 cut(s) 321, 749
BtgI CCRYGG 1 cut(s) 644
BtrI CACGTC 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 3 cut(s) 615, 760, 840
Cac8I GCNNGC 1 cut(s) 631
CfoI GCGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 111
CspCI CAANNNNNGTGG 2 cut(s) 475, 510
CviAII CATG 3 cut(s) 354, 412, 463
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 1 cut(s) 49
DinI GGCGCC 1 cut(s) 129
DpnI GATC 2 cut(s) 18, 396
DpnII GATC 2 cut(s) 16, 394
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 3 cut(s) 294, 304, 501
EarI CTCTTC 3 cut(s) 294, 304, 501
Eco147I AGGCCT 1 cut(s) 749
EcoRI GAATTC 1 cut(s) 693
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 3 cut(s) 357, 415, 466
FatI CATG 3 cut(s) 353, 411, 462
FauNDI CATATG 1 cut(s) 729
FbaI TGATCA 1 cut(s) 394
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 627
Fsp4HI GCNGC 1 cut(s) 627
FspBI CTAG 4 cut(s) 54, 273, 300, 690
GlaI GCGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 627
GsaI CCCAGC 1 cut(s) 776
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 2 cut(s) 321, 749
HapII CCGG 4 cut(s) 26, 322, 374, 740
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 3 cut(s) 357, 415, 466
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HinfI GANTC 4 cut(s) 233, 286, 383, 454
HpaII CCGG 4 cut(s) 26, 322, 374, 740
HphI GGTGA 3 cut(s) 361, 404, 724
Hpy166II GTNNAC 3 cut(s) 237, 513, 589
Hpy188I TCNGA 3 cut(s) 13, 154, 546
Hpy188III TCNNGA 3 cut(s) 26, 586, 740
Hpy8I GTNNAC 3 cut(s) 237, 513, 589
HpyAV CCTTC 3 cut(s) 111, 340, 551
HpyCH4III ACNGT 4 cut(s) 392, 409, 755, 799
HpyCH4IV ACGT 3 cut(s) 39, 256, 718
HpyCH4V TGCA 3 cut(s) 602, 633, 825
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 755
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 3 cut(s) 39, 256, 718
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 3 cut(s) 357, 415, 466
HspAI GCGC 1 cut(s) 128
KasI GGCGCC 1 cut(s) 127
Kpn2I TCCGGA 2 cut(s) 25, 739
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 2 cut(s) 16, 394
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 9 cut(s) 33, 39, 335, 387, 683, 695, 737, 753, 786
Lsp1109I GCAGC 1 cut(s) 613
MaeI CTAG 4 cut(s) 54, 273, 300, 690
MaeII ACGT 3 cut(s) 39, 256, 718
MaeIII GTNAC 3 cut(s) 257, 329, 349
MalI GATC 2 cut(s) 18, 396
MboI GATC 2 cut(s) 16, 394
MboII GAAGA 4 cut(s) 281, 321, 491, 518
MhlI GDGCHC 1 cut(s) 842
MluCI AATT 1 cut(s) 693
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 2 cut(s) 242, 280
MmeI TCCRAC 2 cut(s) 177, 411
MroI TCCGGA 2 cut(s) 25, 739
MroXI GAANNNNTTC 1 cut(s) 719
MseI TTAA 2 cut(s) 210, 621
MslI CAYNNNNRTG 1 cut(s) 181
MspI CCGG 4 cut(s) 26, 322, 374, 740
MwoI GCNNNNNNNGC 2 cut(s) 59, 755
NarI GGCGCC 1 cut(s) 128
NdeI CATATG 1 cut(s) 729
NdeII GATC 2 cut(s) 16, 394
NlaIII CATG 3 cut(s) 357, 415, 466
NlaIV GGNNCC 2 cut(s) 129, 650
NmeAIII GCCGAG 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 349
PceI AGGCCT 1 cut(s) 749
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 2 cut(s) 383, 454
PkrI GCNGC 1 cut(s) 628
PleI GAGTC 2 cut(s) 241, 280
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 2 cut(s) 241, 280
Psp1406I AACGTT 2 cut(s) 256, 718
PspFI CCCAGC 1 cut(s) 772
PspN4I GGNNCC 2 cut(s) 129, 650
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 181
SaqAI TTAA 2 cut(s) 210, 621
SatI GCNGC 1 cut(s) 627
Sau3AI GATC 2 cut(s) 16, 394
SchI GAGTC 2 cut(s) 242, 280
SduI GDGCHC 1 cut(s) 842
SfcI CTRYAG 1 cut(s) 751
SfoI GGCGCC 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
SpeI ACTAGT 1 cut(s) 299
Sse9I AATT 1 cut(s) 693
SseBI AGGCCT 1 cut(s) 749
SsiI CCGC 2 cut(s) 758, 783
SspDI GGCGCC 1 cut(s) 127
SspMI CTAG 4 cut(s) 54, 273, 300, 690
StuI AGGCCT 1 cut(s) 749
TaaI ACNGT 4 cut(s) 392, 409, 755, 799
TaiI ACGT 3 cut(s) 42, 259, 721
TaqI TCGA 1 cut(s) 64
TasI AATT 1 cut(s) 693
TfiI GAWTC 2 cut(s) 383, 454
Tru1I TTAA 2 cut(s) 210, 621
Tru9I TTAA 2 cut(s) 210, 621
TscAI CASTG 3 cut(s) 615, 760, 840
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 1 cut(s) 626
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 5 cut(s) 136, 451, 519, 581, 843
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 3 cut(s) 615, 760, 840
XapI RAATTY 1 cut(s) 693
XmiI GTMKAC 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 719
XspI CTAG 4 cut(s) 54, 273, 300, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.