Rmu_co8394061.1_g000001

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8394061.1
OG0011943
Physical Location & Seq
Forward (+)
314 .. 979
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8394061.1_g000001.1.cds

Sequence Viewer

Length: 666 bp
atggcttctgccaagggtttgaacccgtttgccgctgagttcgtcaaacctcaaaactcgagtttctcaaaaaaagactattcaccgcccaccccgctcaacccttatgcctcatccttttactgcttctcaaatgttctaccggcacccacaggcttcccaagtacccccatcacatactctctccccttccccaccgattttcaatacccaactcattttgagcaccgtgtgcttccggcaatccagtcggttcatcagactgtgtctgatcagccagagctggttgaagtgcagcaaccagctcatgaccttgtggcgcaggaagctaaccaaaaatttgtgcctccaaaagttccgaggattcgtggctccaaaggaaggtataggaggtatagccgattctttgatcagcaaatcggaagaagcagtactagtacagagaagcaggaggggaagcctgctttgaagtcgactgatgagaagaagctaccaaagaaatttattgattacaattggtgtgtgcccaggaggatggtgaagagattctccaacgtgctgccggtgagaaaagacggtgacggcaccaccgtcatgattagaaacatacccaataagtactcgtatgtcgccatcccatctgcatcctctagtttttttcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

221

Amino Acids

25.05

Weight (kDa)

9.78

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07930 AT5G07930 AT5G07930
fragaria_vesca FvH4_2g10100 FvH4_2g10100
malus_domestica MD10G1065500.v1.1
prunus_persica Prupe.8G087500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0267061
rosa_laevigata RLG00000014045
rosa_multiflora Rmu_co8325855.1_g000001 Rmu_co8394061.1_g000001 Rmu_sc0013804.1_g000004
rosa_roxburghii Rroxscaffold_7G00201180
rosa_rugosa Rorug06G0028800
rosa_samantha Rh6AG150300 Rh6BG151200 Rh6CG146600 Rh6DG135300
rosa_wichuraiana Rw6G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 145, 584
AccBSI CCGCTC 1 cut(s) 97
AccI GTMKAC 1 cut(s) 473
AciI CCGC 3 cut(s) 33, 86, 95
AcsI RAATTY 2 cut(s) 338, 500
AdeI CACNNNGTG 1 cut(s) 232
AfaI GTAC 4 cut(s) 166, 433, 439, 620
AfiI CCNNNNNNNGG 1 cut(s) 381
AgsI TTSAA 4 cut(s) 22, 206, 290, 469
AhlI ACTAGT 1 cut(s) 434
AjnI CCWGG 1 cut(s) 527
AluBI AGCT 4 cut(s) 283, 305, 329, 490
AluI AGCT 4 cut(s) 283, 305, 329, 490
Alw21I GWGCWC 1 cut(s) 228
Ama87I CYCGRG 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 295, 559
ApoI RAATTY 2 cut(s) 338, 500
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 1 cut(s) 322
AsuHPI GGTGA 4 cut(s) 75, 550, 577, 590
AvaI CYCGRG 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 528
BanI GGYRCC 2 cut(s) 145, 584
BarI GAAGNNNNNNTAC 2 cut(s) 415, 447
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 307, 546
BccI CCATC 4 cut(s) 179, 529, 641, 646
BceAI ACGGC 1 cut(s) 598
BcgI CGANNNNNNTGC 2 cut(s) 231, 265
BciT130I CCWGG 1 cut(s) 529
BclI TGATCA 2 cut(s) 271, 409
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 2 cut(s) 435, 651
BisI GCNGC 3 cut(s) 33, 296, 560
BlsI GCNGC 3 cut(s) 34, 297, 561
BmcAI AGTACT 2 cut(s) 433, 620
Bme1390I CCNGG 1 cut(s) 529
BmeT110I CYCGRG 1 cut(s) 58
BmiI GGNNCC 3 cut(s) 147, 373, 586
BmrFI CCNGG 1 cut(s) 529
BmsI GCATC 1 cut(s) 653
BsaJI CCNNGG 3 cut(s) 12, 359, 527
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse118I RCCGGY 2 cut(s) 142, 562
Bse1I ACTGG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 529
BseDI CCNNGG 3 cut(s) 12, 359, 527
BseGI GGATG 4 cut(s) 113, 540, 633, 644
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 247
BseSI GKGCMC 1 cut(s) 528
BseXI GCAGC 2 cut(s) 307, 546
BsgI GTGCAG 1 cut(s) 314
BshNI GGYRCC 2 cut(s) 145, 584
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 58
BsiSI CCGG 3 cut(s) 143, 239, 563
BslI CCNNNNNNNGG 1 cut(s) 381
BsoBI CYCGRG 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 228, 528
Bsp143I GATC 2 cut(s) 271, 409
BspACI CCGC 3 cut(s) 33, 86, 95
BspCNI CTCAG 1 cut(s) 28
BspHI TCATGA 2 cut(s) 307, 594
BspLI GGNNCC 3 cut(s) 147, 373, 586
BspT107I GGYRCC 2 cut(s) 145, 584
BsrBI CCGCTC 1 cut(s) 97
BsrFI RCCGGY 2 cut(s) 142, 562
BsrI ACTGG 1 cut(s) 247
BssAI RCCGGY 2 cut(s) 142, 562
BssECI CCNNGG 3 cut(s) 12, 359, 527
BssMI GATC 2 cut(s) 271, 409
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 529
Bst4CI ACNGT 4 cut(s) 230, 265, 578, 592
Bst6I CTCTTC 1 cut(s) 536
BstAPI GCANNNNNTGC 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 36
BstF5I GGATG 4 cut(s) 113, 540, 633, 644
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 2 cut(s) 274, 412
BstMBI GATC 2 cut(s) 271, 409
BstMWI GCNNNNNNNGC 3 cut(s) 94, 232, 326
BstNI CCWGG 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 527
BstSLI GKGCMC 1 cut(s) 528
BstV1I GCAGC 2 cut(s) 307, 546
BstXI CCANNNNNNTGG 1 cut(s) 535
BtsCI GGATG 4 cut(s) 113, 540, 633, 644
Cac8I GCNNGC 1 cut(s) 462
CciI TCATGA 2 cut(s) 307, 594
CfoI GCGC 1 cut(s) 322
Cfr10I RCCGGY 2 cut(s) 142, 562
Csp6I GTAC 4 cut(s) 165, 432, 438, 619
CviAII CATG 2 cut(s) 308, 595
CviQI GTAC 4 cut(s) 165, 432, 438, 619
DdeI CTNAG 1 cut(s) 36
DpnI GATC 2 cut(s) 273, 411
DpnII GATC 2 cut(s) 271, 409
DraIII CACNNNGTG 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco130I CCWWGG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 2 cut(s) 311, 598
FaiI YATR 8 cut(s) 108, 178, 309, 387, 396, 596, 608, 627
FatI CATG 2 cut(s) 307, 594
FauI CCCGC 1 cut(s) 102
FbaI TGATCA 2 cut(s) 271, 409
FblI GTMKAC 1 cut(s) 473
Fnu4HI GCNGC 3 cut(s) 33, 296, 560
FokI GGATG 4 cut(s) 100, 547, 620, 631
Fsp4HI GCNGC 3 cut(s) 33, 296, 560
FspBI CTAG 2 cut(s) 435, 651
GlaI GCGC 1 cut(s) 321
GluI GCNGC 3 cut(s) 33, 296, 560
HapII CCGG 3 cut(s) 143, 239, 563
HhaI GCGC 1 cut(s) 322
Hin1II CATG 2 cut(s) 311, 598
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HinfI GANTC 3 cut(s) 364, 402, 546
HpaII CCGG 3 cut(s) 143, 239, 563
HphI GGTGA 4 cut(s) 75, 550, 577, 590
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 4 cut(s) 261, 271, 360, 422
Hpy188III TCNNGA 2 cut(s) 308, 595
Hpy8I GTNNAC 1 cut(s) 474
HpyAV CCTTC 2 cut(s) 199, 375
HpyCH4III ACNGT 4 cut(s) 230, 265, 578, 592
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 2 cut(s) 295, 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 232, 326
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 2 cut(s) 311, 598
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 2 cut(s) 271, 409
Kzo9I GATC 2 cut(s) 271, 409
LmnI GCTCC 1 cut(s) 377
Lsp1109I GCAGC 2 cut(s) 307, 546
LweI GCATC 1 cut(s) 653
MaeI CTAG 2 cut(s) 435, 651
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 1 cut(s) 578
MalI GATC 2 cut(s) 273, 411
MbiI CCGCTC 1 cut(s) 97
MboI GATC 2 cut(s) 271, 409
MboII GAAGA 3 cut(s) 435, 496, 553
MfeI CAATTG 1 cut(s) 514
MhlI GDGCHC 2 cut(s) 228, 528
MluCI AATT 3 cut(s) 338, 500, 514
MmeI TCCRAC 1 cut(s) 576
MnlI CCTC 8 cut(s) 60, 121, 354, 357, 384, 445, 525, 658
MroXI GAANNNNTTC 1 cut(s) 545
MslI CAYNNNNRTG 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 3 cut(s) 143, 239, 563
MspR9I CCNGG 1 cut(s) 529
MunI CAATTG 1 cut(s) 514
MvaI CCWGG 1 cut(s) 529
MwoI GCNNNNNNNGC 3 cut(s) 94, 232, 326
NdeII GATC 2 cut(s) 271, 409
NlaIII CATG 2 cut(s) 311, 598
NlaIV GGNNCC 3 cut(s) 147, 373, 586
NmuCI GTSAC 1 cut(s) 578
PaeR7I CTCGAG 1 cut(s) 58
PagI TCATGA 2 cut(s) 307, 594
PcsI WCGNNNNNNNCGW 1 cut(s) 588
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 3 cut(s) 364, 402, 546
PflFI GACNNNGTC 1 cut(s) 265
PkrI GCNGC 3 cut(s) 34, 297, 561
Psp6I CCWGG 1 cut(s) 527
PspGI CCWGG 1 cut(s) 527
PspN4I GGNNCC 3 cut(s) 147, 373, 586
PspXI VCTCGAGB 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 265
RsaI GTAC 4 cut(s) 166, 433, 439, 620
RsaNI GTAC 4 cut(s) 165, 432, 438, 619
RseI CAYNNNNRTG 1 cut(s) 593
SalI GTCGAC 1 cut(s) 472
SatI GCNGC 3 cut(s) 33, 296, 560
Sau3AI GATC 2 cut(s) 271, 409
ScaI AGTACT 2 cut(s) 433, 620
ScrFI CCNGG 1 cut(s) 529
SduI GDGCHC 2 cut(s) 228, 528
SetI ASST 9 cut(s) 52, 285, 307, 315, 331, 386, 395, 492, 558
SfaNI GCATC 1 cut(s) 653
Sfr274I CTCGAG 1 cut(s) 58
SlaI CTCGAG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
SpeI ACTAGT 1 cut(s) 434
Sse9I AATT 3 cut(s) 338, 500, 514
SsiI CCGC 3 cut(s) 33, 86, 95
SspMI CTAG 2 cut(s) 435, 651
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 4 cut(s) 230, 265, 578, 592
TaiI ACGT 1 cut(s) 558
TaqI TCGA 2 cut(s) 59, 473
TasI AATT 3 cut(s) 338, 500, 514
TatI WGTACW 3 cut(s) 431, 437, 618
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 3 cut(s) 364, 402, 546
TseFI GTSAC 1 cut(s) 578
TseI GCWGC 2 cut(s) 295, 559
Tsp45I GTSAC 1 cut(s) 578
TspDTI ATGAA 2 cut(s) 245, 650
Tth111I GACNNNGTC 1 cut(s) 265
XapI RAATTY 2 cut(s) 338, 500
XhoI CTCGAG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 2 cut(s) 435, 651
ZrmI AGTACT 2 cut(s) 433, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.