Rmu_co8325855.1_g000001

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8325855.1
OG0011943
Physical Location & Seq
Forward (+)
1 .. 583
583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8325855.1_g000001.1.cds

Sequence Viewer

Length: 361 bp
gactgggatgaacaagggctatgcatttgtaaactttacaaaaccaaaagctgtgtggaagttttacttggccgctcatagccagacatgggattcgttccactccaacaagattcgagaaatcgcctacgctcgaatccaggggaagaaggacttggttcaacattttgagacaatggggtttccttgtgagtcggaggacgtgctgccggtgtgtttcagtccaccgcggaacggatcagagaagttggtggagaggagatatgttgggaagcttgaaggatgggaagggattgggttgaagcgagaggctgcaggaacttggaggaaggtgaaggaaggaagctccgctaggtcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

119

Amino Acids

13.56

Weight (kDa)

9.58

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07930 AT5G07930 AT5G07930
fragaria_vesca FvH4_2g10100 FvH4_2g10100
malus_domestica MD10G1065500.v1.1
prunus_persica Prupe.8G087500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0267061
rosa_laevigata RLG00000014045
rosa_multiflora Rmu_co8325855.1_g000001 Rmu_co8394061.1_g000001 Rmu_sc0013804.1_g000004
rosa_roxburghii Rroxscaffold_7G00201180
rosa_rugosa Rorug06G0028800
rosa_samantha Rh6AG150300 Rh6BG151200 Rh6CG146600 Rh6DG135300
rosa_wichuraiana Rw6G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 75
AccII CGCG 1 cut(s) 230
AciI CCGC 4 cut(s) 73, 228, 230, 349
AclWI GGATC 1 cut(s) 245
AcoI YGGCCR 1 cut(s) 70
AfiI CCNNNNNNNGG 2 cut(s) 89, 234
AgsI TTSAA 3 cut(s) 162, 279, 302
AjiI CACGTC 1 cut(s) 203
AjnI CCWGG 1 cut(s) 139
AjuI GAANNNNNNNTTGG 4 cut(s) 51, 83, 138, 170
AluBI AGCT 3 cut(s) 51, 275, 346
AluI AGCT 3 cut(s) 51, 275, 346
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 1 cut(s) 245
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 206, 312
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AsuHPI GGTGA 1 cut(s) 344
BbvI GCAGC 2 cut(s) 193, 299
BccI CCATC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 1 cut(s) 352
BfmI CTRYAG 1 cut(s) 313
BisI GCNGC 3 cut(s) 73, 207, 313
BlsI GCNGC 3 cut(s) 74, 208, 314
Bme1390I CCNGG 1 cut(s) 141
BmgBI CACGTC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 141
BmrI ACTGGG 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 140, 228
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 234
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 8
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 140, 228
BseGI GGATG 2 cut(s) 13, 288
BseLI CCNNNNNNNGG 2 cut(s) 89, 234
BseNI ACTGG 1 cut(s) 8
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 2 cut(s) 193, 299
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 2 cut(s) 89, 234
BsmAI GTCTC 1 cut(s) 165
BsnI GGCC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 4 cut(s) 73, 228, 230, 349
BspANI GGCC 1 cut(s) 72
BspFNI CGCG 1 cut(s) 230
BspHI TCATGA 1 cut(s) 357
BspMAI CTGCAG 1 cut(s) 317
BspPI GGATC 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 140, 228
BssMI GATC 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 141
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 13, 288
BstFNI CGCG 1 cut(s) 230
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 1 cut(s) 237
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 313
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 193, 299
BsuRI GGCC 1 cut(s) 72
BtgI CCRYGG 1 cut(s) 228
BtrI CACGTC 1 cut(s) 203
BtsCI GGATG 2 cut(s) 13, 288
CciI TCATGA 1 cut(s) 357
Cfr10I RCCGGY 1 cut(s) 209
Cfr42I CCGCGG 1 cut(s) 231
CviAII CATG 2 cut(s) 88, 358
CviJI RGCY 7 cut(s) 19, 51, 72, 82, 275, 312, 346
CviKI_1 RGCY 7 cut(s) 19, 51, 72, 82, 275, 312, 346
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 26
FaeI CATG 2 cut(s) 91, 361
FaiI YATR 5 cut(s) 22, 79, 89, 265, 359
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 138, 170
FatI CATG 2 cut(s) 87, 357
Fnu4HI GCNGC 3 cut(s) 73, 207, 313
FokI GGATG 2 cut(s) 20, 295
Fsp4HI GCNGC 3 cut(s) 73, 207, 313
FspBI CTAG 1 cut(s) 352
GluI GCNGC 3 cut(s) 73, 207, 313
HaeIII GGCC 1 cut(s) 72
HapII CCGG 1 cut(s) 210
Hin1II CATG 2 cut(s) 91, 361
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 4 cut(s) 93, 113, 136, 192
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 2 cut(s) 32, 225
Hpy188I TCNGA 2 cut(s) 197, 242
Hpy188III TCNNGA 2 cut(s) 117, 358
Hpy8I GTNNAC 2 cut(s) 32, 225
HpyAV CCTTC 6 cut(s) 143, 273, 282, 323, 329, 333
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 24, 315
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 2 cut(s) 91, 361
KspI CCGCGG 1 cut(s) 231
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 5 cut(s) 96, 126, 153, 223, 301
Lsp1109I GCAGC 2 cut(s) 193, 299
MaeI CTAG 1 cut(s) 352
MaeII ACGT 1 cut(s) 202
MalI GATC 1 cut(s) 239
MbiI CCGCTC 1 cut(s) 75
MboI GATC 1 cut(s) 237
MboII GAAGA 1 cut(s) 158
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 2 cut(s) 130, 175
MnlI CCTC 4 cut(s) 191, 250, 302, 319
Mph1103I ATGCAT 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
MvnI CGCG 1 cut(s) 230
NdeII GATC 1 cut(s) 237
NlaIII CATG 2 cut(s) 91, 361
NsiI ATGCAT 1 cut(s) 26
PagI TCATGA 1 cut(s) 357
PfeI GAWTC 3 cut(s) 93, 113, 136
PkrI GCNGC 3 cut(s) 74, 208, 314
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PstI CTGCAG 1 cut(s) 317
SacII CCGCGG 1 cut(s) 231
SatI GCNGC 3 cut(s) 73, 207, 313
Sau3AI GATC 1 cut(s) 237
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 141
SetI ASST 6 cut(s) 53, 205, 277, 334, 348, 357
SfcI CTRYAG 1 cut(s) 313
Sfr303I CCGCGG 1 cut(s) 231
SgrBI CCGCGG 1 cut(s) 231
SsiI CCGC 4 cut(s) 73, 228, 230, 349
SspMI CTAG 1 cut(s) 352
StyD4I CCNGG 1 cut(s) 139
TaiI ACGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 116, 134
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 3 cut(s) 93, 113, 136
TseI GCWGC 2 cut(s) 206, 312
TspDTI ATGAA 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XspI CTAG 1 cut(s) 352
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.