FvH4_2g10100

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011943
Physical Location & Seq
Forward (+)
8930030 .. 8932374
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10100.t1

Sequence Viewer

Length: 1062 bp
ATGGCTTCTGCCAAGGGTTTGAACCCGTTTGCTCCTGAGTTTAGGTCGCGAACCCGGTTGGTCTTCTCCGACTATCCACTGCTTCCTCCACCGCTCAACCGCTACGCCTCTTGTTTTTACTCCTTCTCCAATGTTCTAACAGCACCGGCATACTTTCCAAGTTCTCCCGCAACTTACTCTATCCCCGTCCCCCCCGATTTGCCGTACCCAACTCATCACTTGAAGGACCATGTGGTTCCGGCCACCGAGCCCGCGACTCATCACACCGAGCAGCTGGTTGAGGTTGAGCAACAAACCCATGAGGCTGTCCAGAACTTCGCTCCTCCAAAAGTTCCTCGGAATCGTGGTTCCAAGAAAGGGTTTAGGAGGAACAGTCGATACTTTGATCAGCCAACCGGAAGAAGCAGTAGAACTCAGAAGCCTGCTGAGGGAAAGTTACCCAAGAAATATGTTGAAAACAATTGGAGGGTGCCCAGGAGGATGTGGAAGAGGTTCTCCGATGTGCTGCCGGTAAAAAAAAACGGTGATGGTACCACCGTCATGATCAAAAACATACCCAACAAGTACTCTCGCGATCTGTTGATTGCTTTTCTGGATCGCCACTGCGCCAAAGAGAATCAGAAATCTGACGGAGAGAAATCGGAATCGGAATCGGAATCGGCCTTTGATTTCTTGTATCTGCCGATTGATTTCTGGACTGGGATGAACAAGGGCTATGCATTTGTAAACTTCACAAACCCAAAAGCTGTGTGGAAATTTTACTTGGCCGCTCATTGCAAAACATGGGATTCGTTCCACTCCAACAAGATTCGAGAAATCGCCTATGCCCGAATCCAGGGGAAGAAGGATCTGATTCAACATTTTGAGACAATGGGGTTTCCTTGCGAGTCGGAAAATGTGCTGCCGGTTTGTTTCAGTCCACCGCGGAACGGATCGGAGAAGGTGGTGAAGAGAAGAAATGTGGGGAAGCTTGAGGGATGGGATTTGACGGGATTGAAGCGACAAGCTGCAGGAACTTGTAGGAAGTTTGAACTGGTGAAGGAAGGAAGCTCAGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

354

Amino Acids

40.31

Weight (kDa)

9.64

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 178 - 288 2.1e-27 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07930 AT5G07930 AT5G07930
fragaria_vesca FvH4_2g10100 FvH4_2g10100
malus_domestica MD10G1065500.v1.1
prunus_persica Prupe.8G087500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0267061
rosa_laevigata RLG00000014045
rosa_multiflora Rmu_co8325855.1_g000001 Rmu_co8394061.1_g000001 Rmu_sc0013804.1_g000004
rosa_roxburghii Rroxscaffold_7G00201180
rosa_rugosa Rorug06G0028800
rosa_samantha Rh6AG150300 Rh6BG151200 Rh6CG146600 Rh6DG135300
rosa_wichuraiana Rw6G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 530
AccB1I GGYRCC 2 cut(s) 469, 530
AccBSI CCGCTC 2 cut(s) 94, 770
AccII CGCG 4 cut(s) 49, 254, 573, 925
AciI CCGC 7 cut(s) 92, 100, 168, 252, 768, 923, 925
AclWI GGATC 3 cut(s) 603, 855, 940
AcoI YGGCCR 2 cut(s) 240, 765
AcsI RAATTY 1 cut(s) 755
AfaI GTAC 3 cut(s) 206, 532, 566
AfiI CCNNNNNNNGG 4 cut(s) 357, 428, 835, 929
AgsI TTSAA 6 cut(s) 22, 223, 455, 857, 997, 1031
AjnI CCWGG 2 cut(s) 473, 834
AjuI GAANNNNNNNTTGG 2 cut(s) 746, 778
AloI GAACNNNNNNTCC 2 cut(s) 331, 363
AluBI AGCT 7 cut(s) 274, 746, 970, 1007, 1050, 1055, 1059
AluI AGCT 7 cut(s) 274, 746, 970, 1007, 1050, 1055, 1059
Alw26I GTCTC 1 cut(s) 860
AlwI GGATC 3 cut(s) 603, 855, 940
AoxI GGCC 3 cut(s) 240, 660, 765
ApeKI GCWGC 4 cut(s) 271, 505, 901, 1007
ApoI RAATTY 1 cut(s) 755
Asp700I GAANNNNTTC 1 cut(s) 491
Asp718I GGTACC 1 cut(s) 530
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 3 cut(s) 536, 958, 1048
AsuNHI GCTAGC 1 cut(s) 1055
AvaII GGWCC 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 474
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BanI GGYRCC 2 cut(s) 469, 530
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 55
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 4 cut(s) 283, 492, 888, 994
BccI CCATC 2 cut(s) 521, 972
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 2 cut(s) 475, 836
BclI TGATCA 2 cut(s) 385, 543
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 860
BfaI CTAG 2 cut(s) 1056, 1060
BfmI CTRYAG 1 cut(s) 1008
BisI GCNGC 5 cut(s) 272, 506, 768, 902, 1008
BlpI GCTNAGC 1 cut(s) 1051
BlsI GCNGC 5 cut(s) 273, 507, 769, 903, 1009
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 3 cut(s) 55, 475, 836
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 4 cut(s) 237, 349, 471, 532
BmrFI CCNGG 3 cut(s) 55, 475, 836
BmrI ACTGGG 1 cut(s) 708
BmtI GCTAGC 1 cut(s) 1059
BmuI ACTGGG 1 cut(s) 708
BpiI GAAGAC 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 426
Bpu1102I GCTNAGC 1 cut(s) 1051
BpuEI CTTGAG 1 cut(s) 992
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 5 cut(s) 12, 335, 473, 835, 923
BsaWI WCCGGW 1 cut(s) 395
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 358, 388
Bsc4I CCNNNNNNNGG 4 cut(s) 357, 428, 835, 929
Bse118I RCCGGY 3 cut(s) 145, 508, 904
Bse1I ACTGG 2 cut(s) 703, 1038
Bse3DI GCAATG 1 cut(s) 772
BseBI CCWGG 2 cut(s) 475, 836
BseDI CCNNGG 5 cut(s) 12, 335, 473, 835, 923
BseGI GGATG 3 cut(s) 486, 708, 983
BseLI CCNNNNNNNGG 4 cut(s) 357, 428, 835, 929
BseMI GCAATG 1 cut(s) 772
BseMII CTCAG 3 cut(s) 27, 417, 428
BseNI ACTGG 2 cut(s) 703, 1038
BseRI GAGGAG 1 cut(s) 312
BseSI GKGCMC 1 cut(s) 474
BseXI GCAGC 4 cut(s) 283, 492, 888, 994
Bsh1236I CGCG 4 cut(s) 49, 254, 573, 925
BshFI GGCC 3 cut(s) 242, 662, 767
BshNI GGYRCC 2 cut(s) 469, 530
BsiSI CCGG 6 cut(s) 55, 146, 239, 396, 509, 905
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 4 cut(s) 357, 428, 835, 929
BsmAI GTCTC 1 cut(s) 860
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 3 cut(s) 242, 662, 767
Bsp1286I GDGCHC 2 cut(s) 252, 474
Bsp143I GATC 6 cut(s) 385, 543, 574, 595, 847, 932
Bsp1720I GCTNAGC 1 cut(s) 1051
Bsp68I TCGCGA 2 cut(s) 49, 573
BspACI CCGC 7 cut(s) 92, 100, 168, 252, 768, 923, 925
BspANI GGCC 3 cut(s) 242, 662, 767
BspCNI CTCAG 3 cut(s) 28, 418, 427
BspFNI CGCG 4 cut(s) 49, 254, 573, 925
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 4 cut(s) 237, 349, 471, 532
BspMAI CTGCAG 1 cut(s) 1012
BspOI GCTAGC 1 cut(s) 1059
BspPI GGATC 3 cut(s) 603, 855, 940
BspT107I GGYRCC 2 cut(s) 469, 530
BsrBI CCGCTC 2 cut(s) 94, 770
BsrDI GCAATG 1 cut(s) 772
BsrFI RCCGGY 3 cut(s) 145, 508, 904
BsrI ACTGG 2 cut(s) 703, 1038
BssAI RCCGGY 3 cut(s) 145, 508, 904
BssECI CCNNGG 5 cut(s) 12, 335, 473, 835, 923
BssMI GATC 6 cut(s) 385, 543, 574, 595, 847, 932
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 2 cut(s) 475, 836
Bst4CI ACNGT 3 cut(s) 374, 524, 538
Bst6I CTCTTC 2 cut(s) 482, 944
BstC8I GCNNGC 3 cut(s) 252, 423, 1057
BstDEI CTNAG 4 cut(s) 36, 414, 426, 1051
BstDSI CCRYGG 1 cut(s) 923
BstF5I GGATG 3 cut(s) 486, 708, 983
BstFNI CGCG 4 cut(s) 49, 254, 573, 925
BstHHI GCGC 1 cut(s) 608
BstKTI GATC 6 cut(s) 388, 546, 577, 598, 850, 935
BstMAI GTCTC 1 cut(s) 860
BstMBI GATC 6 cut(s) 385, 543, 574, 595, 847, 932
BstMWI GCNNNNNNNGC 1 cut(s) 1056
BstNI CCWGG 2 cut(s) 475, 836
BstSCI CCNGG 3 cut(s) 53, 473, 834
BstSFI CTRYAG 1 cut(s) 1008
BstSLI GKGCMC 1 cut(s) 474
BstUI CGCG 4 cut(s) 49, 254, 573, 925
BstV1I GCAGC 4 cut(s) 283, 492, 888, 994
BstV2I GAAGAC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 847
BstYI RGATCY 1 cut(s) 847
BsuRI GGCC 3 cut(s) 242, 662, 767
BtgI CCRYGG 1 cut(s) 923
BtsCI GGATG 3 cut(s) 486, 708, 983
BtsI GCAGTG 2 cut(s) 77, 601
BtsIMutI CAGTG 2 cut(s) 77, 601
BtuMI TCGCGA 2 cut(s) 49, 573
Cac8I GCNNGC 3 cut(s) 252, 423, 1057
CciI TCATGA 1 cut(s) 540
CfoI GCGC 1 cut(s) 608
Cfr10I RCCGGY 3 cut(s) 145, 508, 904
Cfr13I GGNCC 1 cut(s) 226
Cfr42I CCGCGG 1 cut(s) 926
Csp6I GTAC 3 cut(s) 205, 531, 565
CviAII CATG 4 cut(s) 230, 299, 541, 783
CviQI GTAC 3 cut(s) 205, 531, 565
DdeI CTNAG 4 cut(s) 36, 414, 426, 1051
DpnI GATC 6 cut(s) 387, 545, 576, 597, 849, 934
DpnII GATC 6 cut(s) 385, 543, 574, 595, 847, 932
EaeI YGGCCR 2 cut(s) 240, 765
Eam1104I CTCTTC 2 cut(s) 482, 944
EarI CTCTTC 2 cut(s) 482, 944
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 473, 834
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 721
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 4 cut(s) 233, 302, 544, 786
FaiI YATR 9 cut(s) 151, 231, 300, 450, 542, 554, 717, 784, 825
FaqI GGGAC 1 cut(s) 173
FatI CATG 4 cut(s) 229, 298, 540, 782
FauI CCCGC 2 cut(s) 175, 259
FbaI TGATCA 2 cut(s) 385, 543
Fnu4HI GCNGC 5 cut(s) 272, 506, 768, 902, 1008
FokI GGATG 3 cut(s) 493, 715, 990
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 5 cut(s) 272, 506, 768, 902, 1008
FspBI CTAG 2 cut(s) 1056, 1060
GlaI GCGC 1 cut(s) 607
GluI GCNGC 5 cut(s) 272, 506, 768, 902, 1008
HaeIII GGCC 3 cut(s) 242, 662, 767
HapII CCGG 6 cut(s) 55, 146, 239, 396, 509, 905
HhaI GCGC 1 cut(s) 608
Hin1II CATG 4 cut(s) 233, 302, 544, 786
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HindIII AAGCTT 1 cut(s) 968
HpaII CCGG 6 cut(s) 55, 146, 239, 396, 509, 905
HphI GGTGA 3 cut(s) 536, 958, 1048
Hpy166II GTNNAC 2 cut(s) 727, 920
Hpy188III TCNNGA 8 cut(s) 35, 48, 310, 541, 572, 593, 694, 812
Hpy8I GTNNAC 2 cut(s) 727, 920
HpyAV CCTTC 6 cut(s) 133, 217, 838, 934, 1033, 1037
HpyCH4III ACNGT 3 cut(s) 374, 524, 538
HpyCH4V TGCA 3 cut(s) 719, 777, 1010
HpyF10VI GCNNNNNNNGC 1 cut(s) 1056
HpyF3I CTNAG 4 cut(s) 36, 414, 426, 1051
Hsp92II CATG 4 cut(s) 233, 302, 544, 786
HspAI GCGC 1 cut(s) 606
KpnI GGTACC 1 cut(s) 534
Ksp22I TGATCA 2 cut(s) 385, 543
KspI CCGCGG 1 cut(s) 926
Kzo9I GATC 6 cut(s) 385, 543, 574, 595, 847, 932
LmnI GCTCC 2 cut(s) 37, 325
Lsp1109I GCAGC 4 cut(s) 283, 492, 888, 994
MaeI CTAG 2 cut(s) 1056, 1060
MaeIII GTNAC 1 cut(s) 435
MalI GATC 6 cut(s) 387, 545, 576, 597, 849, 934
MbiI CCGCTC 2 cut(s) 94, 770
MboI GATC 6 cut(s) 385, 543, 574, 595, 847, 932
MboII GAAGA 6 cut(s) 55, 411, 499, 853, 961, 966
MfeI CAATTG 1 cut(s) 460
MflI RGATCY 1 cut(s) 847
MhlI GDGCHC 2 cut(s) 252, 474
MluCI AATT 2 cut(s) 460, 755
MlyI GAGTC 2 cut(s) 250, 896
MmeI TCCRAC 3 cut(s) 93, 825, 870
Mph1103I ATGCAT 1 cut(s) 721
MroXI GAANNNNTTC 1 cut(s) 491
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 2 cut(s) 274, 925
MspI CCGG 6 cut(s) 55, 146, 239, 396, 509, 905
MspR9I CCNGG 3 cut(s) 55, 475, 836
MunI CAATTG 1 cut(s) 460
MvaI CCWGG 2 cut(s) 475, 836
MvnI CGCG 4 cut(s) 49, 254, 573, 925
MwoI GCNNNNNNNGC 1 cut(s) 1056
NciI CCSGG 1 cut(s) 55
NdeII GATC 6 cut(s) 385, 543, 574, 595, 847, 932
NheI GCTAGC 1 cut(s) 1055
NlaIII CATG 4 cut(s) 233, 302, 544, 786
NlaIV GGNNCC 4 cut(s) 237, 349, 471, 532
NruI TCGCGA 2 cut(s) 49, 573
NsiI ATGCAT 1 cut(s) 721
PagI TCATGA 1 cut(s) 540
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 9 cut(s) 340, 616, 644, 650, 656, 788, 808, 831, 853
PkrI GCNGC 5 cut(s) 273, 507, 769, 903, 1009
PleI GAGTC 2 cut(s) 250, 895
PpsI GAGTC 2 cut(s) 250, 895
Psp6I CCWGG 2 cut(s) 473, 834
PspGI CCWGG 2 cut(s) 473, 834
PspN4I GGNNCC 4 cut(s) 237, 349, 471, 532
PspPI GGNCC 1 cut(s) 226
PsrI GAACNNNNNNTAC 2 cut(s) 362, 394
PstI CTGCAG 1 cut(s) 1012
PsuI RGATCY 1 cut(s) 847
PvuII CAGCTG 1 cut(s) 274
RruI TCGCGA 2 cut(s) 49, 573
RsaI GTAC 3 cut(s) 206, 532, 566
RsaNI GTAC 3 cut(s) 205, 531, 565
RseI CAYNNNNRTG 1 cut(s) 539
SacII CCGCGG 1 cut(s) 926
SatI GCNGC 5 cut(s) 272, 506, 768, 902, 1008
Sau3AI GATC 6 cut(s) 385, 543, 574, 595, 847, 932
Sau96I GGNCC 1 cut(s) 226
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 2 cut(s) 250, 896
ScrFI CCNGG 3 cut(s) 55, 475, 836
SduI GDGCHC 2 cut(s) 252, 474
SfcI CTRYAG 1 cut(s) 1008
Sfr303I CCGCGG 1 cut(s) 926
SgrBI CCGCGG 1 cut(s) 926
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 1 cut(s) 971
SmoI CTYRAG 1 cut(s) 971
Sse9I AATT 2 cut(s) 460, 755
SsiI CCGC 7 cut(s) 92, 100, 168, 252, 768, 923, 925
SspMI CTAG 2 cut(s) 1056, 1060
StyD4I CCNGG 3 cut(s) 53, 473, 834
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 3 cut(s) 374, 524, 538
TaqI TCGA 2 cut(s) 376, 811
TasI AATT 2 cut(s) 460, 755
TatI WGTACW 1 cut(s) 564
TauI GCSGC 1 cut(s) 770
TfiI GAWTC 9 cut(s) 340, 616, 644, 650, 656, 788, 808, 831, 853
TscAI CASTG 2 cut(s) 84, 608
TseI GCWGC 4 cut(s) 271, 505, 901, 1007
TspDTI ATGAA 1 cut(s) 719
TspGWI ACGGA 2 cut(s) 645, 945
TspRI CASTG 2 cut(s) 84, 608
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 1 cut(s) 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 747
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 2 cut(s) 1056, 1060
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.