Prupe.8G087500_v2.0.a1

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011943
Physical Location & Seq
Reverse (-)
12056891 .. 12063847
6957 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G087500.1

Sequence Viewer

Length: 1017 bp
ATGCCACTCATTCTAAGACATGCATACTATGCCACATGTCCATATCTAGCCACCACCACCGCCGGCCATCGGTCGCCGGTCATCATTGCCGACCACCGGTCATCACCCCTGGTCACCGTCGACGTCAGCCAATGCCGTACCCAACAAGCCCCTCTCAACTTTCTGCAACCATCAACTGAGCCAACTCTTACCCTACCTCATGAAGAGCATGGCCTCCGTGGGGTCCAGAACCAAGAGGCCAAGACAGTGTCTCGTTCACCAAGGCCAAGGGCGGTCAAGGGGTATTATAGGAATAAAAAGCGGTGCTCTTTTGGTCATGGAGGTCTAGGGAGCAGTTTTAATGAAAGCAGAAGGGGTACTTATTGTAAGTGTGAGAAGGAAAGGGAAGTGAGGCCAAGGTTGGGGTTTGTCAATAGTTATGATAAAGGTTTTGATAATTGGAAAAGTAATGGCATGGGAAATAATTGGCTTGGGCCCAACAAGGTGAGGAGCAAACAATTCTCGGATGTGTTGCCTGTGGTACGTGGTGGAGACAATACCACTGTTATGATCAGGAACATTCCCAACAATCGTGATCTGCTTATGGCTTTTCTGGACACTCATTGCGCCATGGAGAATAAAAAATATGAGAAACTTGGCAGAGAAGGAGGAGGAGATAACTCGACGCTAATATCTGCTTATGACTTCTTGTATCTACCAATAGACTTCCAGACCGGGTTCAACAAAGGGTATGCATTTGTGAACTTCACGAGCCCAGAGGCAGTCTGGAAGTTTTACAAAGCGGCTCACAGCCAAGCATGGGAGCTCTTCCACTCTACTAAGATACGTCAAATTGCCTATGCCAAAATCCAGGGGAAGAAGGGGCTGGTAAGGCATTTTGAGACGATGGGGTTTCCATGTGAATCAGAAGATGTGTTGCCTCTATCTTTCGAGCCACCTCGAGACGGTCTCAGGAGGCAGGTTCTGCGCACGACCGTAGGCAAGCTCATTTTCCGCAAAGAAGAAAAATCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

339

Amino Acids

38.42

Weight (kDa)

9.65

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07930 AT5G07930 AT5G07930
fragaria_vesca FvH4_2g10100 FvH4_2g10100
malus_domestica MD10G1065500.v1.1
prunus_persica Prupe.8G087500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0267061
rosa_laevigata RLG00000014045
rosa_multiflora Rmu_co8325855.1_g000001 Rmu_co8394061.1_g000001 Rmu_sc0013804.1_g000004
rosa_roxburghii Rroxscaffold_7G00201180
rosa_rugosa Rorug06G0028800
rosa_samantha Rh6AG150300 Rh6BG151200 Rh6CG146600 Rh6DG135300
rosa_wichuraiana Rw6G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 126
Acc16I TGCGCA 1 cut(s) 968
Acc36I ACCTGC 1 cut(s) 949
AccI GTMKAC 1 cut(s) 120
AciI CCGC 5 cut(s) 60, 272, 301, 782, 994
AcoI YGGCCR 1 cut(s) 64
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 3 cut(s) 139, 358, 522
AfiI CCNNNNNNNGG 6 cut(s) 69, 96, 220, 401, 799, 944
AflIII ACRYGT 1 cut(s) 35
AgeI ACCGGT 1 cut(s) 96
AgsI TTSAA 1 cut(s) 721
AhdI GACNNNNNGTC 1 cut(s) 97
AjnI CCWGG 2 cut(s) 108, 849
AluBI AGCT 2 cut(s) 805, 985
AluI AGCT 2 cut(s) 805, 985
Alw21I GWGCWC 2 cut(s) 308, 807
Alw26I GTCTC 5 cut(s) 255, 525, 875, 936, 953
AlwNI CAGNNNCTG 1 cut(s) 964
Ama87I CYCGRG 1 cut(s) 939
AoxI GGCC 6 cut(s) 64, 211, 237, 263, 392, 473
ApaI GGGCCC 1 cut(s) 477
AsiGI ACCGGT 1 cut(s) 96
AspLEI GCGC 2 cut(s) 608, 969
AspS9I GGNCC 3 cut(s) 223, 473, 474
AsuC2I CCSGG 1 cut(s) 715
AsuHPI GGTGA 4 cut(s) 96, 106, 249, 496
AvaI CYCGRG 1 cut(s) 939
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 477
BanII GRGCYC 3 cut(s) 477, 755, 807
BauI CACGAG 1 cut(s) 748
Bbv12I GWGCWC 2 cut(s) 308, 807
BccI CCATC 3 cut(s) 75, 178, 880
BceAI ACGGC 1 cut(s) 120
BciT130I CCWGG 2 cut(s) 110, 851
BclI TGATCA 1 cut(s) 549
BcnI CCSGG 1 cut(s) 715
BcoDI GTCTC 5 cut(s) 255, 525, 875, 936, 953
BfaI CTAG 2 cut(s) 47, 326
BfuAI ACCTGC 1 cut(s) 949
BisI GCNGC 1 cut(s) 783
BlsI GCNGC 1 cut(s) 784
Bme1390I CCNGG 3 cut(s) 110, 715, 851
Bme18I GGWCC 1 cut(s) 223
BmeRI GACNNNNNGTC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 939
BmgT120I GGNCC 3 cut(s) 223, 473, 474
BmiI GGNNCC 2 cut(s) 224, 475
BmrFI CCNGG 3 cut(s) 110, 715, 851
BplI GAGNNNNNCTC 2 cut(s) 933, 965
BpuMI CCSGG 1 cut(s) 715
BsaAI YACGTR 1 cut(s) 524
BsaHI GRCGYC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 953
BsaJI CCNNGG 7 cut(s) 108, 217, 260, 266, 395, 609, 850
BsaWI WCCGGW 1 cut(s) 96
Bsc4I CCNNNNNNNGG 6 cut(s) 69, 96, 220, 401, 799, 944
Bse118I RCCGGY 3 cut(s) 62, 76, 96
Bse3DI GCAATG 2 cut(s) 84, 601
BseBI CCWGG 2 cut(s) 110, 851
BseDI CCNNGG 7 cut(s) 108, 217, 260, 266, 395, 609, 850
BseGI GGATG 1 cut(s) 511
BseLI CCNNNNNNNGG 6 cut(s) 69, 96, 220, 401, 799, 944
BseMI GCAATG 2 cut(s) 84, 601
BseMII CTCAG 2 cut(s) 168, 964
BseRI GAGGAG 3 cut(s) 502, 663, 666
BseSI GKGCMC 1 cut(s) 477
Bsh1285I CGRYCG 2 cut(s) 74, 975
BshFI GGCC 6 cut(s) 66, 213, 239, 265, 394, 475
BshTI ACCGGT 1 cut(s) 96
BsiEI CGRYCG 2 cut(s) 74, 975
BsiHKAI GWGCWC 2 cut(s) 308, 807
BsiHKCI CYCGRG 1 cut(s) 939
BsiSI CCGG 4 cut(s) 63, 77, 97, 714
BslI CCNNNNNNNGG 6 cut(s) 69, 96, 220, 401, 799, 944
BsmAI GTCTC 5 cut(s) 255, 525, 875, 936, 953
BsmBI CGTCTC 2 cut(s) 875, 936
BsnI GGCC 6 cut(s) 66, 213, 239, 265, 394, 475
Bso31I GGTCTC 1 cut(s) 953
BsoBI CYCGRG 1 cut(s) 939
Bsp120I GGGCCC 1 cut(s) 473
Bsp1286I GDGCHC 4 cut(s) 308, 477, 755, 807
Bsp143I GATC 2 cut(s) 549, 574
Bsp19I CCATGG 1 cut(s) 609
BspACI CCGC 5 cut(s) 60, 272, 301, 782, 994
BspANI GGCC 6 cut(s) 66, 213, 239, 265, 394, 475
BspCNI CTCAG 2 cut(s) 169, 963
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 224, 475
BspMI ACCTGC 1 cut(s) 949
BspQI GCTCTTC 2 cut(s) 198, 812
BspTNI GGTCTC 1 cut(s) 953
BsrDI GCAATG 2 cut(s) 84, 601
BsrFI RCCGGY 3 cut(s) 62, 76, 96
BssAI RCCGGY 3 cut(s) 62, 76, 96
BssECI CCNNGG 7 cut(s) 108, 217, 260, 266, 395, 609, 850
BssMI GATC 2 cut(s) 549, 574
BssNI GRCGYC 1 cut(s) 123
BssSI CACGAG 1 cut(s) 748
BssT1I CCWWGG 4 cut(s) 260, 266, 395, 609
Bst2BI CACGAG 1 cut(s) 748
Bst2UI CCWGG 2 cut(s) 110, 851
Bst4CI ACNGT 5 cut(s) 118, 247, 544, 947, 976
Bst6I CTCTTC 2 cut(s) 198, 812
BstACI GRCGYC 1 cut(s) 123
BstAPI GCANNNNNTGC 2 cut(s) 29, 964
BstBAI YACGTR 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 64, 983
BstDEI CTNAG 5 cut(s) 14, 177, 819, 950, 1011
BstDSI CCRYGG 2 cut(s) 217, 609
BstEII GGTNACC 1 cut(s) 112
BstF5I GGATG 1 cut(s) 511
BstHHI GCGC 2 cut(s) 608, 969
BstKTI GATC 2 cut(s) 552, 577
BstMAI GTCTC 5 cut(s) 255, 525, 875, 936, 953
BstMBI GATC 2 cut(s) 549, 574
BstMCI CGRYCG 2 cut(s) 74, 975
BstMWI GCNNNNNNNGC 3 cut(s) 29, 871, 964
BstNI CCWGG 2 cut(s) 110, 851
BstNSI RCATGY 2 cut(s) 23, 39
BstPI GGTNACC 1 cut(s) 112
BstSCI CCNGG 3 cut(s) 108, 713, 849
BstSLI GKGCMC 1 cut(s) 477
BsuRI GGCC 6 cut(s) 66, 213, 239, 265, 394, 475
BtgI CCRYGG 2 cut(s) 217, 609
BtsCI GGATG 1 cut(s) 511
BtsIMutI CAGTG 2 cut(s) 252, 540
BveI ACCTGC 1 cut(s) 949
Cac8I GCNNGC 2 cut(s) 64, 983
CaiI CAGNNNCTG 1 cut(s) 964
CciI TCATGA 1 cut(s) 199
CfoI GCGC 2 cut(s) 608, 969
Cfr10I RCCGGY 3 cut(s) 62, 76, 96
Cfr13I GGNCC 3 cut(s) 223, 473, 474
CseI GACGC 1 cut(s) 673
Csp6I GTAC 3 cut(s) 138, 357, 521
CspAI ACCGGT 1 cut(s) 96
CviAII CATG 9 cut(s) 20, 36, 200, 209, 317, 454, 610, 798, 897
CviQI GTAC 3 cut(s) 138, 357, 521
DdeI CTNAG 5 cut(s) 14, 177, 819, 950, 1011
DpnI GATC 2 cut(s) 551, 576
DpnII GATC 2 cut(s) 549, 574
DriI GACNNNNNGTC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 198, 812
Eam1105I GACNNNNNGTC 1 cut(s) 97
EarI CTCTTC 2 cut(s) 198, 812
Ecl136II GAGCTC 1 cut(s) 805
Eco130I CCWWGG 4 cut(s) 260, 266, 395, 609
Eco24I GRGCYC 3 cut(s) 477, 755, 807
Eco31I GGTCTC 1 cut(s) 953
Eco47I GGWCC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 805
Eco88I CYCGRG 1 cut(s) 939
Eco91I GGTNACC 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 805
EcoO65I GGTNACC 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 108, 849
EcoT14I CCWWGG 4 cut(s) 260, 266, 395, 609
EcoT22I ATGCAT 2 cut(s) 25, 736
EcoT38I GRGCYC 3 cut(s) 477, 755, 807
ErhI CCWWGG 4 cut(s) 260, 266, 395, 609
Esp3I CGTCTC 2 cut(s) 875, 936
FaeI CATG 9 cut(s) 23, 39, 203, 212, 320, 457, 613, 801, 900
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FatI CATG 9 cut(s) 19, 35, 199, 208, 316, 453, 609, 797, 896
FbaI TGATCA 1 cut(s) 549
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 783
FokI GGATG 1 cut(s) 518
FriOI GRGCYC 3 cut(s) 477, 755, 807
Fsp4HI GCNGC 1 cut(s) 783
FspBI CTAG 2 cut(s) 47, 326
FspI TGCGCA 1 cut(s) 968
GlaI GCGC 2 cut(s) 607, 968
GluI GCNGC 1 cut(s) 783
HaeIII GGCC 6 cut(s) 66, 213, 239, 265, 394, 475
HapII CCGG 4 cut(s) 63, 77, 97, 714
HgaI GACGC 1 cut(s) 673
HhaI GCGC 2 cut(s) 608, 969
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 9 cut(s) 23, 39, 203, 212, 320, 457, 613, 801, 900
Hin6I GCGC 2 cut(s) 606, 967
HinP1I GCGC 2 cut(s) 606, 967
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 902
HpaII CCGG 4 cut(s) 63, 77, 97, 714
HphI GGTGA 4 cut(s) 96, 106, 249, 496
Hpy166II GTNNAC 3 cut(s) 121, 257, 742
Hpy188I TCNGA 2 cut(s) 505, 907
Hpy8I GTNNAC 3 cut(s) 121, 257, 742
Hpy99I CGWCG 3 cut(s) 122, 125, 667
HpyAV CCTTC 4 cut(s) 345, 370, 638, 853
HpyCH4III ACNGT 5 cut(s) 118, 247, 544, 947, 976
HpyCH4IV ACGT 3 cut(s) 123, 523, 826
HpyCH4V TGCA 3 cut(s) 23, 166, 734
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 871, 964
HpyF3I CTNAG 5 cut(s) 14, 177, 819, 950, 1011
HpySE526I ACGT 3 cut(s) 123, 523, 826
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 9 cut(s) 23, 39, 203, 212, 320, 457, 613, 801, 900
HspAI GCGC 2 cut(s) 606, 967
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 549
Kzo9I GATC 2 cut(s) 549, 574
LguI GCTCTTC 2 cut(s) 198, 812
LmnI GCTCC 3 cut(s) 330, 489, 802
MaeI CTAG 2 cut(s) 47, 326
MaeII ACGT 3 cut(s) 123, 523, 826
MaeIII GTNAC 1 cut(s) 112
MalI GATC 2 cut(s) 551, 576
MboI GATC 2 cut(s) 549, 574
MboII GAAGA 5 cut(s) 215, 799, 868, 920, 1013
MhlI GDGCHC 4 cut(s) 308, 477, 755, 807
MluCI AATT 4 cut(s) 436, 463, 497, 831
Mph1103I ATGCAT 2 cut(s) 25, 736
MroNI GCCGGC 1 cut(s) 62
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 545
MspI CCGG 4 cut(s) 63, 77, 97, 714
MspR9I CCNGG 3 cut(s) 110, 715, 851
MvaI CCWGG 2 cut(s) 110, 851
MwoI GCNNNNNNNGC 3 cut(s) 29, 871, 964
NaeI GCCGGC 1 cut(s) 64
NciI CCSGG 1 cut(s) 715
NcoI CCATGG 1 cut(s) 609
NdeII GATC 2 cut(s) 549, 574
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 9 cut(s) 23, 39, 203, 212, 320, 457, 613, 801, 900
NlaIV GGNNCC 2 cut(s) 224, 475
NmuCI GTSAC 1 cut(s) 112
NsbI TGCGCA 1 cut(s) 968
NsiI ATGCAT 2 cut(s) 25, 736
NspI RCATGY 2 cut(s) 23, 39
PaeR7I CTCGAG 1 cut(s) 939
PagI TCATGA 1 cut(s) 199
PciI ACATGT 1 cut(s) 35
PciSI GCTCTTC 2 cut(s) 198, 812
PdiI GCCGGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 902
PflFI GACNNNGTC 1 cut(s) 247
PinAI ACCGGT 1 cut(s) 96
PkrI GCNGC 1 cut(s) 784
Ppu21I YACGTR 1 cut(s) 524
PscI ACATGT 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 807
Psp6I CCWGG 2 cut(s) 108, 849
PspEI GGTNACC 1 cut(s) 112
PspGI CCWGG 2 cut(s) 108, 849
PspN4I GGNNCC 2 cut(s) 224, 475
PspOMI GGGCCC 1 cut(s) 473
PspPI GGNCC 3 cut(s) 223, 473, 474
PstNI CAGNNNCTG 1 cut(s) 964
PsyI GACNNNGTC 1 cut(s) 247
RsaI GTAC 3 cut(s) 139, 358, 522
RsaNI GTAC 3 cut(s) 138, 357, 521
RseI CAYNNNNRTG 1 cut(s) 545
SacI GAGCTC 1 cut(s) 807
SalI GTCGAC 1 cut(s) 119
SapI GCTCTTC 2 cut(s) 198, 812
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 783
Sau3AI GATC 2 cut(s) 549, 574
Sau96I GGNCC 3 cut(s) 223, 473, 474
ScrFI CCNGG 3 cut(s) 110, 715, 851
SduI GDGCHC 4 cut(s) 308, 477, 755, 807
Sfr274I CTCGAG 1 cut(s) 939
SgrDI CGTCGACG 1 cut(s) 119
SinI GGWCC 1 cut(s) 223
SlaI CTCGAG 1 cut(s) 939
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 939
SmoI CTYRAG 1 cut(s) 939
Sse9I AATT 4 cut(s) 436, 463, 497, 831
SsiI CCGC 5 cut(s) 60, 272, 301, 782, 994
SspMI CTAG 2 cut(s) 47, 326
SstI GAGCTC 1 cut(s) 807
StyD4I CCNGG 3 cut(s) 108, 713, 849
StyI CCWWGG 4 cut(s) 260, 266, 395, 609
TaaI ACNGT 5 cut(s) 118, 247, 544, 947, 976
TaiI ACGT 3 cut(s) 126, 526, 829
TaqI TCGA 4 cut(s) 120, 662, 930, 940
TaqII GACCGA 1 cut(s) 60
TasI AATT 4 cut(s) 436, 463, 497, 831
TauI GCSGC 1 cut(s) 785
TfiI GAWTC 1 cut(s) 902
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 2 cut(s) 252, 547
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 216, 357
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 2 cut(s) 252, 547
Tth111I GACNNNGTC 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 223
XceI RCATGY 2 cut(s) 23, 39
XcmI CCANNNNNNNNNTGG 1 cut(s) 762
XhoI CTCGAG 1 cut(s) 939
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 2 cut(s) 47, 326
ZraI GACGTC 1 cut(s) 124
Zsp2I ATGCAT 2 cut(s) 25, 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.