RLG00000014045

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011943
Physical Location & Seq
Reverse (-)
46162337 .. 46163882
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014045

Sequence Viewer

Length: 1107 bp
ATGGCTTCTGCCAAGGGTTTGAACCCGTTTGCCGCTGAGTTCGTCAAACCTCAAAACTCGAGTTTCTCAAAAAAAGACTATTCACCGCCTACCCCGCTCAACCCTTATGCCTCATCCTTTTACTGCTTCTCAAATGTTCTACCGGCACCCACAGGCTTCCCAAGTACCCCCATCACTTATTCTCTCCCCTTCCCCACCGATTTTCAATACCCAACTCATTTTGAGCACCATGTGCTTCCGGAAATCCAGTCGGTTCATCATCAGACTCTGTCTGATCAGCCAGAGCTGGTTGAAGTGCAGCAACCAGCTCATGACCTTGCTGCGCAGGAAGCTAACCAAAAATTTGTACCTCCAAAAGTTCCGAGGATTCGTGGCTCCAAAGGAAGGTATAGGAGGTATAGGCGATTCTTTGATCAGCAAATCGGAAGAAGCAGCAGTACTAGTACAGAGAAGCAGGAGGGGAAGCCTGCTTTGAAGTCGACTGATGAGAAGAAGCTACCAAAGAAGTTTATTGATTACAATTGGAGTGTGCCCAGGAGGATGGTGAAGAGATTCTCCAACGTGCTGCCGGTGAGAAAAGACGGTGACGGCACCACCATCATGATTAGAAACATACCCAATAAGTACTCTCGTGATCTGTTGATGACTTTTCTGGACAAGCACTGTGCGAATGAGAATCGGAAATCTGACGGAGGAGAAGAATCGGAATCGGCCTTTGATTTCTTGTATCTGCCAATTGATTTTTGGACTGGGATGAACAAGGGCTATGCATTTGTAAACTTTACAAAACCAAAAGCTGTGTGGAAGTTTTACCTGGCCGCTCATAGCCAGACATGGGATTCGTTCCACTCCAACAAGATTCGAGAAATAGCCTACGCTCGAATTCAGGGGAAGAAGGACTTGGTTCAACATTTTGAGACGATGGGGTTTCCCTGTGAGTCGGAGGAAGTGCTGCCGGTGTGTTTCAGTCCACCGCGGAACGGATCAGAGAAGTTGGTGGAGAGGAGATACGTTGGGAAGCTTGAAGGATGGGAAGGGATTGGATTGAAGCGACAGGCTGCAGGAACTTGGAGGAAGGTGAAGGAAGGAAGCTCAGCTAGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

369

Amino Acids

42.12

Weight (kDa)

9.5

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 198 - 305 6.4e-27 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07930 AT5G07930 AT5G07930
fragaria_vesca FvH4_2g10100 FvH4_2g10100
malus_domestica MD10G1065500.v1.1
prunus_persica Prupe.8G087500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0267061
rosa_laevigata RLG00000014045
rosa_multiflora Rmu_co8325855.1_g000001 Rmu_co8394061.1_g000001 Rmu_sc0013804.1_g000004
rosa_roxburghii Rroxscaffold_7G00201180
rosa_rugosa Rorug06G0028800
rosa_samantha Rh6AG150300 Rh6BG151200 Rh6CG146600 Rh6DG135300
rosa_wichuraiana Rw6G013030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 324
AccB1I GGYRCC 2 cut(s) 145, 590
AccBSI CCGCTC 2 cut(s) 97, 821
AccI GTMKAC 1 cut(s) 479
AccII CGCG 1 cut(s) 976
AccIII TCCGGA 1 cut(s) 238
AciI CCGC 6 cut(s) 33, 86, 95, 819, 974, 976
AclWI GGATC 1 cut(s) 991
AcoI YGGCCR 1 cut(s) 816
AcsI RAATTY 2 cut(s) 341, 882
AdeI CACNNNGTG 1 cut(s) 232
AfaI GTAC 5 cut(s) 166, 348, 439, 445, 626
AfiI CCNNNNNNNGG 3 cut(s) 384, 835, 980
AgsI TTSAA 7 cut(s) 22, 206, 293, 475, 908, 1025, 1048
AhlI ACTAGT 1 cut(s) 440
AjnI CCWGG 2 cut(s) 533, 813
AjuI GAANNNNNNNTTGG 2 cut(s) 884, 916
AluBI AGCT 8 cut(s) 286, 308, 332, 496, 797, 1021, 1092, 1097
AluI AGCT 8 cut(s) 286, 308, 332, 496, 797, 1021, 1092, 1097
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 911
AlwI GGATC 1 cut(s) 991
AlwNI CAGNNNCTG 1 cut(s) 268
Ama87I CYCGRG 1 cut(s) 58
Aor13HI TCCGGA 1 cut(s) 238
AoxI GGCC 2 cut(s) 711, 816
ApeKI GCWGC 6 cut(s) 298, 320, 432, 565, 952, 1058
ApoI RAATTY 2 cut(s) 341, 882
ArsI GACNNNNNNTTYG 2 cut(s) 823, 855
Asp700I GAANNNNTTC 1 cut(s) 551
AspLEI GCGC 1 cut(s) 325
AsuHPI GGTGA 5 cut(s) 75, 556, 583, 596, 1090
AvaI CYCGRG 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 534
BanI GGYRCC 2 cut(s) 145, 590
BarI GAAGNNNNNNTAC 2 cut(s) 421, 453
BauI CACGAG 1 cut(s) 630
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 6 cut(s) 307, 310, 444, 552, 939, 1045
BccI CCATC 5 cut(s) 179, 535, 605, 916, 1023
BceAI ACGGC 1 cut(s) 604
BciT130I CCWGG 2 cut(s) 535, 815
BclI TGATCA 2 cut(s) 274, 412
BcoDI GTCTC 1 cut(s) 911
BcuI ACTAGT 1 cut(s) 440
BfaI CTAG 2 cut(s) 441, 1098
BfmI CTRYAG 1 cut(s) 1059
BisI GCNGC 8 cut(s) 33, 299, 321, 433, 566, 819, 953, 1059
BlpI GCTNAGC 1 cut(s) 1093
BlsI GCNGC 8 cut(s) 34, 300, 322, 434, 567, 820, 954, 1060
BmcAI AGTACT 2 cut(s) 439, 626
Bme1390I CCNGG 2 cut(s) 535, 815
BmeT110I CYCGRG 1 cut(s) 58
BmiI GGNNCC 3 cut(s) 147, 376, 592
BmrFI CCNGG 2 cut(s) 535, 815
BmrI ACTGGG 1 cut(s) 759
BmuI ACTGGG 1 cut(s) 759
Bpu1102I GCTNAGC 1 cut(s) 1093
BsaJI CCNNGG 4 cut(s) 12, 362, 533, 974
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 3 cut(s) 384, 835, 980
Bse118I RCCGGY 3 cut(s) 142, 568, 955
Bse1I ACTGG 2 cut(s) 247, 754
BseAI TCCGGA 1 cut(s) 238
BseBI CCWGG 2 cut(s) 535, 815
BseDI CCNNGG 4 cut(s) 12, 362, 533, 974
BseGI GGATG 4 cut(s) 113, 546, 759, 1034
BseLI CCNNNNNNNGG 3 cut(s) 384, 835, 980
BseMII CTCAG 2 cut(s) 27, 1107
BseNI ACTGG 2 cut(s) 247, 754
BseRI GAGGAG 2 cut(s) 708, 1018
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 6 cut(s) 307, 310, 444, 552, 939, 1045
BsgI GTGCAG 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 976
BshFI GGCC 2 cut(s) 713, 818
BshNI GGYRCC 2 cut(s) 145, 590
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 58
BsiSI CCGG 4 cut(s) 143, 239, 569, 956
BslI CCNNNNNNNGG 3 cut(s) 384, 835, 980
BsmAI GTCTC 1 cut(s) 911
BsmBI CGTCTC 1 cut(s) 911
BsnI GGCC 2 cut(s) 713, 818
BsoBI CYCGRG 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 228, 534
Bsp13I TCCGGA 1 cut(s) 238
Bsp143I GATC 4 cut(s) 274, 412, 634, 983
Bsp1720I GCTNAGC 1 cut(s) 1093
BspACI CCGC 6 cut(s) 33, 86, 95, 819, 974, 976
BspANI GGCC 2 cut(s) 713, 818
BspCNI CTCAG 2 cut(s) 28, 1106
BspEI TCCGGA 1 cut(s) 238
BspFNI CGCG 1 cut(s) 976
BspHI TCATGA 3 cut(s) 310, 600, 1103
BspLI GGNNCC 3 cut(s) 147, 376, 592
BspMAI CTGCAG 1 cut(s) 1063
BspPI GGATC 1 cut(s) 991
BspT107I GGYRCC 2 cut(s) 145, 590
BsrBI CCGCTC 2 cut(s) 97, 821
BsrFI RCCGGY 3 cut(s) 142, 568, 955
BsrI ACTGG 2 cut(s) 247, 754
BssAI RCCGGY 3 cut(s) 142, 568, 955
BssECI CCNNGG 4 cut(s) 12, 362, 533, 974
BssMI GATC 4 cut(s) 274, 412, 634, 983
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 1 cut(s) 12
Bst2BI CACGAG 1 cut(s) 630
Bst2UI CCWGG 2 cut(s) 535, 815
Bst4CI ACNGT 2 cut(s) 584, 665
Bst6I CTCTTC 1 cut(s) 542
BstAPI GCANNNNNTGC 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 2 cut(s) 36, 1093
BstDSI CCRYGG 1 cut(s) 974
BstF5I GGATG 4 cut(s) 113, 546, 759, 1034
BstFNI CGCG 1 cut(s) 976
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 4 cut(s) 277, 415, 637, 986
BstMAI GTCTC 1 cut(s) 911
BstMBI GATC 4 cut(s) 274, 412, 634, 983
BstMWI GCNNNNNNNGC 3 cut(s) 94, 232, 329
BstNI CCWGG 2 cut(s) 535, 815
BstSCI CCNGG 2 cut(s) 533, 813
BstSFI CTRYAG 1 cut(s) 1059
BstSLI GKGCMC 1 cut(s) 534
BstUI CGCG 1 cut(s) 976
BstV1I GCAGC 6 cut(s) 307, 310, 444, 552, 939, 1045
BstXI CCANNNNNNTGG 1 cut(s) 541
BsuRI GGCC 2 cut(s) 713, 818
BtgI CCRYGG 1 cut(s) 974
BtsCI GGATG 4 cut(s) 113, 546, 759, 1034
BtsIMutI CAGTG 1 cut(s) 661
Cac8I GCNNGC 1 cut(s) 468
CaiI CAGNNNCTG 1 cut(s) 268
CciI TCATGA 3 cut(s) 310, 600, 1103
CfoI GCGC 1 cut(s) 325
Cfr10I RCCGGY 3 cut(s) 142, 568, 955
Cfr42I CCGCGG 1 cut(s) 977
Csp6I GTAC 5 cut(s) 165, 347, 438, 444, 625
CviAII CATG 5 cut(s) 230, 311, 601, 834, 1104
CviQI GTAC 5 cut(s) 165, 347, 438, 444, 625
DdeI CTNAG 2 cut(s) 36, 1093
DpnI GATC 4 cut(s) 276, 414, 636, 985
DpnII GATC 4 cut(s) 274, 412, 634, 983
DraIII CACNNNGTG 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 816
Eam1104I CTCTTC 1 cut(s) 542
EarI CTCTTC 1 cut(s) 542
Eco130I CCWWGG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 58
EcoRI GAATTC 1 cut(s) 882
EcoRII CCWGG 2 cut(s) 533, 813
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 772
ErhI CCWWGG 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 911
FaeI CATG 5 cut(s) 233, 314, 604, 837, 1107
FalI AAGNNNNNCTT 2 cut(s) 884, 916
FatI CATG 5 cut(s) 229, 310, 600, 833, 1103
FauI CCCGC 1 cut(s) 102
FbaI TGATCA 2 cut(s) 274, 412
FblI GTMKAC 1 cut(s) 479
Fnu4HI GCNGC 8 cut(s) 33, 299, 321, 433, 566, 819, 953, 1059
FokI GGATG 4 cut(s) 100, 553, 766, 1041
Fsp4HI GCNGC 8 cut(s) 33, 299, 321, 433, 566, 819, 953, 1059
FspBI CTAG 2 cut(s) 441, 1098
FspI TGCGCA 1 cut(s) 324
GlaI GCGC 1 cut(s) 324
GluI GCNGC 8 cut(s) 33, 299, 321, 433, 566, 819, 953, 1059
HaeIII GGCC 2 cut(s) 713, 818
HapII CCGG 4 cut(s) 143, 239, 569, 956
HhaI GCGC 1 cut(s) 325
Hin1II CATG 5 cut(s) 233, 314, 604, 837, 1107
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HincII GTYRAC 1 cut(s) 480
HindII GTYRAC 1 cut(s) 480
HindIII AAGCTT 1 cut(s) 1019
HpaII CCGG 4 cut(s) 143, 239, 569, 956
HphI GGTGA 5 cut(s) 75, 556, 583, 596, 1090
Hpy166II GTNNAC 3 cut(s) 480, 778, 971
Hpy188I TCNGA 9 cut(s) 264, 274, 363, 425, 681, 688, 706, 943, 988
Hpy188III TCNNGA 7 cut(s) 239, 311, 601, 632, 653, 863, 1104
Hpy8I GTNNAC 3 cut(s) 480, 778, 971
HpyAV CCTTC 8 cut(s) 199, 378, 889, 1019, 1028, 1069, 1075, 1079
HpyCH4III ACNGT 2 cut(s) 584, 665
HpyCH4IV ACGT 2 cut(s) 561, 1011
HpyCH4V TGCA 3 cut(s) 298, 770, 1061
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 232, 329
HpyF3I CTNAG 2 cut(s) 36, 1093
HpySE526I ACGT 2 cut(s) 561, 1011
Hsp92II CATG 5 cut(s) 233, 314, 604, 837, 1107
HspAI GCGC 1 cut(s) 323
Kpn2I TCCGGA 1 cut(s) 238
Ksp22I TGATCA 2 cut(s) 274, 412
KspI CCGCGG 1 cut(s) 977
Kzo9I GATC 4 cut(s) 274, 412, 634, 983
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 6 cut(s) 307, 310, 444, 552, 939, 1045
MaeI CTAG 2 cut(s) 441, 1098
MaeII ACGT 2 cut(s) 561, 1011
MaeIII GTNAC 1 cut(s) 584
MalI GATC 4 cut(s) 276, 414, 636, 985
MbiI CCGCTC 2 cut(s) 97, 821
MboI GATC 4 cut(s) 274, 412, 634, 983
MboII GAAGA 5 cut(s) 438, 502, 559, 710, 904
MfeI CAATTG 2 cut(s) 520, 735
MhlI GDGCHC 2 cut(s) 228, 534
MluCI AATT 4 cut(s) 341, 520, 735, 882
MlyI GAGTC 2 cut(s) 259, 947
MmeI TCCRAC 3 cut(s) 582, 876, 921
Mph1103I ATGCAT 1 cut(s) 772
MroI TCCGGA 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 551
MslI CAYNNNNRTG 1 cut(s) 599
MspA1I CMGCKG 2 cut(s) 35, 976
MspI CCGG 4 cut(s) 143, 239, 569, 956
MspR9I CCNGG 2 cut(s) 535, 815
MunI CAATTG 2 cut(s) 520, 735
MvaI CCWGG 2 cut(s) 535, 815
MvnI CGCG 1 cut(s) 976
MwoI GCNNNNNNNGC 3 cut(s) 94, 232, 329
NdeII GATC 4 cut(s) 274, 412, 634, 983
NlaIII CATG 5 cut(s) 233, 314, 604, 837, 1107
NlaIV GGNNCC 3 cut(s) 147, 376, 592
NmuCI GTSAC 1 cut(s) 584
NsbI TGCGCA 1 cut(s) 324
NsiI ATGCAT 1 cut(s) 772
PaeR7I CTCGAG 1 cut(s) 58
PagI TCATGA 3 cut(s) 310, 600, 1103
PdmI GAANNNNTTC 1 cut(s) 551
PfeI GAWTC 8 cut(s) 367, 405, 552, 676, 701, 707, 839, 859
PflFI GACNNNGTC 1 cut(s) 268
PkrI GCNGC 8 cut(s) 34, 300, 322, 434, 567, 820, 954, 1060
PleI GAGTC 2 cut(s) 259, 946
PpsI GAGTC 2 cut(s) 259, 946
Psp6I CCWGG 2 cut(s) 533, 813
PspGI CCWGG 2 cut(s) 533, 813
PspN4I GGNNCC 3 cut(s) 147, 376, 592
PspXI VCTCGAGB 1 cut(s) 58
PstI CTGCAG 1 cut(s) 1063
PstNI CAGNNNCTG 1 cut(s) 268
PsyI GACNNNGTC 1 cut(s) 268
RsaI GTAC 5 cut(s) 166, 348, 439, 445, 626
RsaNI GTAC 5 cut(s) 165, 347, 438, 444, 625
RseI CAYNNNNRTG 1 cut(s) 599
SacII CCGCGG 1 cut(s) 977
SalI GTCGAC 1 cut(s) 478
SatI GCNGC 8 cut(s) 33, 299, 321, 433, 566, 819, 953, 1059
Sau3AI GATC 4 cut(s) 274, 412, 634, 983
ScaI AGTACT 2 cut(s) 439, 626
SchI GAGTC 2 cut(s) 259, 947
ScrFI CCNGG 2 cut(s) 535, 815
SduI GDGCHC 2 cut(s) 228, 534
SfcI CTRYAG 1 cut(s) 1059
Sfr274I CTCGAG 1 cut(s) 58
Sfr303I CCGCGG 1 cut(s) 977
SgrBI CCGCGG 1 cut(s) 977
SlaI CTCGAG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
SpeI ACTAGT 1 cut(s) 440
Sse9I AATT 4 cut(s) 341, 520, 735, 882
SsiI CCGC 6 cut(s) 33, 86, 95, 819, 974, 976
SspMI CTAG 2 cut(s) 441, 1098
StyD4I CCNGG 2 cut(s) 533, 813
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 584, 665
TaiI ACGT 2 cut(s) 564, 1014
TaqI TCGA 4 cut(s) 59, 479, 862, 880
TasI AATT 4 cut(s) 341, 520, 735, 882
TatI WGTACW 3 cut(s) 437, 443, 624
TauI GCSGC 2 cut(s) 35, 821
TfiI GAWTC 8 cut(s) 367, 405, 552, 676, 701, 707, 839, 859
TscAI CASTG 1 cut(s) 668
TseFI GTSAC 1 cut(s) 584
TseI GCWGC 6 cut(s) 298, 320, 432, 565, 952, 1058
Tsp45I GTSAC 1 cut(s) 584
TspDTI ATGAA 2 cut(s) 245, 770
TspGWI ACGGA 2 cut(s) 705, 996
TspRI CASTG 1 cut(s) 668
Tth111I GACNNNGTC 1 cut(s) 268
XapI RAATTY 2 cut(s) 341, 882
XcmI CCANNNNNNNNNTGG 2 cut(s) 741, 798
XhoI CTCGAG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 2 cut(s) 441, 1098
ZrmI AGTACT 2 cut(s) 439, 626
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.