AT5G08040

mitochondrial import receptor subunit tom5 homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
2577006 .. 2578310
1305 bp
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UTR
Exon/CDS
Intron
AT5G08040.1

Sequence Viewer

Length: 165 bp
ATGGTGAACAACGTTGTCTCTATCGAAAAGATGAAAGCACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATGAAACTTCTGCGAGCACTTGGTATGTTTGCAGGAGGAGTCGTCCTCATGCGTAGCTATGGGGATCTCATGGGAGTTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.09

Weight (kDa)

8.18

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G08040
fragaria_vesca FvH4_5g13750
malus_domestica MD06G1225800.v1.1 MD14G1212700.v1.1
prunus_persica Prupe.5G206000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0183191
rosa_laevigata RLG00000005068
rosa_roxburghii Rroxscaffold_3G00270670
rosa_rugosa Rorug06G0454700
rosa_samantha Rh7BG056800 Rh7CG057900 Rh7DG056700
rosa_wichuraiana Rw7G004660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AclI AACGTT 1 cut(s) 12
AclWI GGATC 1 cut(s) 156
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 156
AsuHPI GGTGA 2 cut(s) 16, 91
Bbv12I GWGCWC 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 22
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BsaJI CCNNGG 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
BseDI CCNNGG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 1 cut(s) 77
BspHI TCATGA 1 cut(s) 58
BspPI GGATC 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 99
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 99
CciI TCATGA 1 cut(s) 58
CviAII CATG 4 cut(s) 59, 85, 133, 154
CviJI RGCY 1 cut(s) 141
CviKI_1 RGCY 1 cut(s) 141
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
FaeI CATG 4 cut(s) 62, 88, 136, 157
FaiI YATR 6 cut(s) 60, 86, 110, 134, 144, 155
FatI CATG 4 cut(s) 58, 84, 132, 153
Hin1II CATG 4 cut(s) 62, 88, 136, 157
HinfI GANTC 1 cut(s) 123
HphI GGTGA 2 cut(s) 16, 91
Hpy166II GTNNAC 2 cut(s) 7, 82
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 2 cut(s) 7, 82
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 4 cut(s) 62, 88, 136, 157
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 2 cut(s) 28, 102
MaeII ACGT 1 cut(s) 12
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 103
MlyI GAGTC 1 cut(s) 132
MnlI CCTC 3 cut(s) 46, 113, 140
NdeII GATC 1 cut(s) 148
NlaIII CATG 4 cut(s) 62, 88, 136, 157
PagI TCATGA 1 cut(s) 58
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp1406I AACGTT 1 cut(s) 12
PsuI RGATCY 1 cut(s) 148
Sau3AI GATC 1 cut(s) 148
SchI GAGTC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 103
SetI ASST 3 cut(s) 15, 57, 143
SgeI CNNG 8 cut(s) 55, 64, 71, 97, 110, 116, 129, 145
SsiI CCGC 1 cut(s) 77
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 24
TspDTI ATGAA 4 cut(s) 47, 47, 78, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.